Naoki Shibata

Naoki Shibata

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Multimodality findings of coronary stenosis and aneurysm in Takayasu arteritis: a case report.

Coron Artery Dis 2019 Nov;30(7):551-552

Department of Cardiology, Nagoya University Graduate School of Medicine, Nagoya, Japan.

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http://dx.doi.org/10.1097/MCA.0000000000000749DOI Listing
November 2019

Protein surface charge effect on 3D domain swapping in cells for c-type cytochromes.

Biochim Biophys Acta Proteins Proteom 2019 Nov 19;1867(11):140265. Epub 2019 Aug 19.

Division of Materials Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.bbapap.2019.140265DOI Listing
November 2019

Evaluation of an artificial intelligence system for detecting vertical root fracture on panoramic radiography.

Oral Radiol 2019 Sep 18. Epub 2019 Sep 18.

Department of Oral and Maxillofacial Radiology, Aichi-Gakuin University School of Dentistry, 2-11 Suemori-dori, Chikusa-ku, Nagoya, 464-8651, Japan.

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http://dx.doi.org/10.1007/s11282-019-00409-xDOI Listing
September 2019

High-resolution structure of a Y27W mutant of the Dishevelled2 DIX domain.

Acta Crystallogr F Struct Biol Commun 2019 Feb 23;75(Pt 2):116-122. Epub 2019 Jan 23.

Graduate School of Life Science, University of Hyogo, 3-2-1 Koto, Kamigori, Ako-gun, Hyogo 678-1297, Japan.

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http://scripts.iucr.org/cgi-bin/paper?S2053230X18018290
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http://dx.doi.org/10.1107/S2053230X18018290DOI Listing
February 2019

Head-to-Tail Complex of Dishevelled and Axin-DIX Domains: Expression, Purification, Crystallographic Studies and Packing Analysis.

Protein Pept Lett 2019 ;26(10):792-797

Graduate School of Life Science, University of Hyogo, Ako-gun, Japan.

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http://dx.doi.org/10.2174/0929866526666190425152721DOI Listing
January 2019

Redox Potential-Dependent Formation of an Unusual His-Trp Bond in Bilirubin Oxidase.

Chemistry 2018 Dec 15;24(68):18052-18058. Epub 2018 Nov 15.

Department of Picobiology, Graduate School of Life Science, University of Hyogo, 3-2-1 Koto, Kamigori-cho, Ako-gun, Hyogo, 678-1297, Japan.

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http://dx.doi.org/10.1002/chem.201803798DOI Listing
December 2018

Structural Changes of the Trinuclear Copper Center in Bilirubin Oxidase upon Reduction.

Molecules 2018 Dec 26;24(1). Epub 2018 Dec 26.

Department of Chemistry, Graduate School of Science, Tohoku University, 6-3 Aoba, Aramaki, Aoba-ku, Sendai, Miyagi 980-8578, Japan.

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http://www.mdpi.com/1420-3049/24/1/76
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http://dx.doi.org/10.3390/molecules24010076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6337666PMC
December 2018

Direct Participation of a Peripheral Side Chain of a Corrin Ring in Coenzyme B Catalysis.

Angew Chem Int Ed Engl 2018 06 25;57(26):7830-7835. Epub 2018 May 25.

Department of Bioscience and Biotechnology, Graduate School of Natural Science and Technology, Okayama University, Tsushima-naka, Okayama, 700-8530, Japan.

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http://dx.doi.org/10.1002/anie.201803591DOI Listing
June 2018

Real-time multiplex PCR for simultaneous detection of multiple species from environmental DNA: an application on two Japanese medaka species.

Sci Rep 2018 06 14;8(1):9138. Epub 2018 Jun 14.

Faculty of Science and Technology, Ryukoku University, 1-5 Yokotani, Seta Oe-cho, Otsu, 520-2194, Japan.

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http://dx.doi.org/10.1038/s41598-018-27434-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6002393PMC
June 2018

Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase.

Sci Rep 2018 06 27;8(1):9725. Epub 2018 Jun 27.

Department of Picobiology, Graduate School of Life Science, University of Hyogo, Kamigori-cho, Ako-gun, 678-1297, Japan.

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http://dx.doi.org/10.1038/s41598-018-27860-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6021441PMC
June 2018

Construction of a Triangle-Shaped Trimer and a Tetrahedron Using an α-Helix-Inserted Circular Permutant of Cytochrome c.

Chem Asian J 2018 Apr 15;13(8):964-967. Epub 2018 Mar 15.

Graduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan.

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http://doi.wiley.com/10.1002/asia.201800252
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http://dx.doi.org/10.1002/asia.201800252DOI Listing
April 2018

Ni-elimination from the active site of the standard [NiFe]‑hydrogenase upon oxidation by O.

J Inorg Biochem 2017 12 14;177:435-437. Epub 2017 Sep 14.

Department of Picobiology, University of Hyogo, 3-2-1 Koto, Kamigori-cho, Ako-gun, Hyogo 678-1297, Japan; Core Research for Evolutional Science and Technology(CREST), Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, Japan; SPring-8 Center, RIKEN, 1-1-1 Koto, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.jinorgbio.2017.09.011DOI Listing
December 2017

Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins.

Chembiochem 2017 09 21;18(17):1712-1715. Epub 2017 Jul 21.

Graduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan.

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http://dx.doi.org/10.1002/cbic.201700219DOI Listing
September 2017

Formation and carbon monoxide-dependent dissociation of Allochromatium vinosum cytochrome c' oligomers using domain-swapped dimers.

Protein Sci 2017 03 14;26(3):464-474. Epub 2017 Feb 14.

Graduate School of Materials Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan.

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http://dx.doi.org/10.1002/pro.3090DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5326568PMC
March 2017

Biochemical, spectroscopic and X-ray structural analysis of deuterated multicopper oxidase CueO prepared from a new expression construct for neutron crystallography.

Acta Crystallogr F Struct Biol Commun 2016 10 22;72(Pt 10):788-794. Epub 2016 Sep 22.

Department of Life Science, Graduate School of Life Science, University of Hyogo, 3-2-1 Koto, Kamigori, Ako-gun, Hyogo 678-1297, Japan.

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http://dx.doi.org/10.1107/S2053230X1601400XDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5053165PMC
October 2016

Mutations affecting the internal equilibrium of the reaction catalyzed by 6-aminohexanoate-dimer hydrolase.

FEBS Lett 2016 09 2;590(18):3133-43. Epub 2016 Sep 2.

Department of Life Science, Graduate School of Life Science, University of Hyogo, Himeji, Hyogo, Japan.

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http://dx.doi.org/10.1002/1873-3468.12354DOI Listing
September 2016

Molecular architectures and functions of radical enzymes and their (re)activating proteins.

J Biochem 2015 Oct 10;158(4):271-92. Epub 2015 Aug 10.

Department of Bioscience and Biotechnology, Graduate School of Natural Science and Technology, Okayama University, Tsushima-naka, Kita-ku, Okayama 700-8530, Japan

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http://dx.doi.org/10.1093/jb/mvv078DOI Listing
October 2015

Crystallization and X-ray diffraction analysis of nylon hydrolase (NylC) from Arthrobacter sp. KI72.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2013 Oct 28;69(Pt 10):1151-4. Epub 2013 Sep 28.

Department of Materials Science and Chemistry, Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo 671-2280, Japan.

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http://dx.doi.org/10.1107/S1744309113024263DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3792678PMC
October 2013

Photosensitivity of the Ni-A state of [NiFe] hydrogenase from Desulfovibrio vulgaris Miyazaki F with visible light.

Biochem Biophys Res Commun 2013 Jan 15;430(1):284-8. Epub 2012 Nov 15.

Graduate School of Life Science, University of Hyogo, 3-2-1, Koto, Kamigori-cho, Ako-gun, Hyogo 678-1297, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2012.10.136DOI Listing
January 2013

Crystal structure analysis of the translation factor RF3 (release factor 3).

FEBS Lett 2012 Oct 6;586(20):3705-9. Epub 2012 Sep 6.

Graduate School of Life Science, University of Hyogo, Ako 678-1297, Japan.

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http://dx.doi.org/10.1016/j.febslet.2012.08.029DOI Listing
October 2012

Structural and enzymatic characterization of BacD, an L-amino acid dipeptide ligase from Bacillus subtilis.

Protein Sci 2012 May 30;21(5):707-16. Epub 2012 Mar 30.

Department of Life Science, Graduate School of Life Science, University of Hyogo, 3-2-1 Koto, Ako-gun, Hyogo 678-1297, Japan.

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http://doi.wiley.com/10.1002/pro.2058
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http://dx.doi.org/10.1002/pro.2058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3403468PMC
May 2012

Redesign of coenzyme B(12) dependent diol dehydratase to be resistant to the mechanism-based inactivation by glycerol and act on longer chain 1,2-diols.

FEBS J 2012 Mar 30;279(5):793-804. Epub 2012 Jan 30.

Department of Bioscience and Biotechnology, Graduate School of Natural Science and Technology, Okayama University, Japan.

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http://dx.doi.org/10.1111/j.1742-4658.2012.08470.xDOI Listing
March 2012

Imaging of sialidase activity in rat brain sections by a highly sensitive fluorescent histochemical method.

Neuroimage 2011 Sep 16;58(1):34-40. Epub 2011 Jun 16.

Department of Biochemistry, University of Shizuoka, Shizuoka, Japan.

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http://dx.doi.org/10.1016/j.neuroimage.2011.06.017DOI Listing
September 2011

Crystallization and X-ray diffraction analysis of nylon-oligomer hydrolase (NylC) from Agromyces sp. KY5R.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2011 Aug 19;67(Pt 8):892-5. Epub 2011 Jul 19.

Department of Materials Science and Chemistry, Graduate School of Engineering, University of Hyogo, Himeji, Hyogo, Japan.

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http://dx.doi.org/10.1107/S1744309111022858DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3151121PMC
August 2011

Crystallographic characterization of the DIX domain of the Wnt signalling positive regulator Ccd1.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2011 Jul 30;67(Pt 7):758-61. Epub 2011 Jun 30.

Department of Life Science, Graduate School of Life Science, University of Hyogo, 3-2-1 Koto, Kamigori-cho, Ako-gun, Hyogo 678-1297, Japan.

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http://dx.doi.org/10.1107/S1744309111016526DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3144790PMC
July 2011

How coenzyme B12-dependent ethanolamine ammonia-lyase deals with both enantiomers of 2-amino-1-propanol as substrates: structure-based rationalization.

Biochemistry 2011 Feb 30;50(4):591-8. Epub 2010 Dec 30.

Department of Life Science, Graduate School of Life Science, University of Hyogo, 3-2-1 Koto, Kamigori-cho, Ako-gun, Hyogo, Japan.

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http://pubs.acs.org/doi/abs/10.1021/bi101696h
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http://dx.doi.org/10.1021/bi101696hDOI Listing
February 2011

[A case of urachal carcinoma treated with S-1/CDDP combination chemotherapy].

Hinyokika Kiyo 2010 Aug;56(8):447-51

Department of Urology, Chibaken Saiseikai Narashino Hospital.

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August 2010

Expression, crystallization and preliminary X-ray crystallographic study of ethanolamine ammonia-lyase from Escherichia coli.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2010 Jun 29;66(Pt 6):709-11. Epub 2010 May 29.

Department of Life Science, Graduate School of Science, University of Hyogo, 3-2-1 Koto, Kamigori-cho, Ako-gun, Hyogo 678-1297, Japan.

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http://dx.doi.org/10.1107/S1744309110014478DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2882776PMC
June 2010

Gonadal sex differentiation and expression of Sox9a2, Dmrt1, and Foxl2 in Oryzias luzonensis.

Genesis 2009 May;47(5):289-99

Department of Biology, Shinshu University, Matsumoto, Nagano, Japan.

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http://dx.doi.org/10.1002/dvg.20498DOI Listing
May 2009

Molecular design of a nylon-6 byproduct-degrading enzyme from a carboxylesterase with a beta-lactamase fold.

FEBS J 2009 May 18;276(9):2547-56. Epub 2009 Mar 18.

Department of Materials Science and Chemistry, Graduate School of Engineering, University of Hyogo, Japan.

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http://dx.doi.org/10.1111/j.1742-4658.2009.06978.xDOI Listing
May 2009

Zwitterionic corroles: regioselective nucleophilic pyridination of a doubly linked biscorrole.

Angew Chem Int Ed Engl 2009 ;48(13):2388-90

Department of Applied Chemistry, Graduate School of Engineering, Nagoya University, Nagoya 464-8603, Japan.

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http://dx.doi.org/10.1002/anie.200805674DOI Listing
April 2009

Crystallization and preliminary X-ray crystallographic study of flavoredoxin from Desulfovibrio vulgaris Miyazaki F.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2008 Sep 20;64(Pt 9):851-3. Epub 2008 Aug 20.

Department of Life Science, Graduate School of Life Science, University of Hyogo, 3-2-1 Koto, Kamigori-cho, Ako-gun, Hyogo 678-1297, Japan.

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http://scripts.iucr.org/cgi-bin/paper?S1744309108025840
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http://dx.doi.org/10.1107/S1744309108025840DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2531261PMC
September 2008

Crystallization and preliminary X-ray analysis of a class II release factor RF3 from a sulfate-reducing bacterium.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2008 Jul 11;64(Pt 7):622-4. Epub 2008 Jun 11.

Graduate School of Life Science, University of Hyogo, 3-2-1 Koto, Kamigori-cho, Ako-gun, Hyogo 678-1297, Japan.

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http://dx.doi.org/10.1107/S1744309108015583DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2443967PMC
July 2008

Development of the input equipment for a computer using surface EMG.

Conf Proc IEEE Eng Med Biol Soc 2006 ;1:1331-4

Department of Electrical and Electronic Engineering, University of Tokai, Japan.

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http://ieeexplore.ieee.org/iel5/4028925/4461641/04462006.pdf
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http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumbe
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http://dx.doi.org/10.1109/IEMBS.2006.259222DOI Listing
March 2008

The novel mutant scl of the medaka fish, Oryzias latipes, shows no secondary sex characters.

Zoolog Sci 2008 Mar;25(3):299-306

Department of Environmental Science, Faculty of Science, Niigata University, Ikarashi, Niigata, Japan.

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http://dx.doi.org/10.2108/zsj.25.299DOI Listing
March 2008

Molecular basis for specificities of reactivating factors for adenosylcobalamin-dependent diol and glycerol dehydratases.

FEBS J 2007 Nov 4;274(21):5556-66. Epub 2007 Oct 4.

Department of Bioscience and Biotechnology, Graduate School of Natural Science and Technology, Okayama University, Japan.

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http://dx.doi.org/10.1111/j.1742-4658.2007.06074.xDOI Listing
November 2007

Dax1 suppresses P450arom expression in medaka ovarian follicles.

Mol Reprod Dev 2007 Oct;74(10):1239-46

Department of Environmental System Science, Graduate School of Science and Technology, Shinshu University, Matsumoto, Japan.

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http://dx.doi.org/10.1002/mrd.20689DOI Listing
October 2007

Crystal structures of hydrogenase maturation protein HypE in the Apo and ATP-bound forms.

J Mol Biol 2007 Sep 26;372(4):1045-1054. Epub 2007 Jul 26.

Department of Life Science, Graduate School of Life Science, University of Hyogo, 3-2-1 Koto, Kamigori-cho, Ako-gun, Hyogo 678-1297, Japan; RIKEN SPring-8 Center, 1-1-1 Koto, Sayo-gun, Sayo-cho, Hyogo 679-5148, Japan. Electronic address:

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http://dx.doi.org/10.1016/j.jmb.2007.07.023DOI Listing
September 2007

Nylon-oligomer degrading enzyme/substrate complex: catalytic mechanism of 6-aminohexanoate-dimer hydrolase.

J Mol Biol 2007 Jun 24;370(1):142-56. Epub 2007 Apr 24.

Department of Materials Science and Chemistry, Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo 671-2280, Japan.

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http://linkinghub.elsevier.com/retrieve/pii/S002228360700534
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http://dx.doi.org/10.1016/j.jmb.2007.04.043DOI Listing
June 2007

The DIX domain of Dishevelled confers Wnt signaling by dynamic polymerization.

Nat Struct Mol Biol 2007 Jun 27;14(6):484-92. Epub 2007 May 27.

Medical Research Council Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK.

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http://www.nature.com/articles/nsmb1247
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http://dx.doi.org/10.1038/nsmb1247DOI Listing
June 2007

Crystallization and preliminary X-ray crystallographic studies of the axin DIX domain.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2007 Jun 18;63(Pt 6):529-31. Epub 2007 May 18.

Department of Life Science, Graduate School of Science, University of Hyogo, Koto, Kamigori-cho, Ako-gun, Hyogo, Japan.

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http://dx.doi.org/10.1107/S1744309107022579DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2335085PMC
June 2007

Determination of the role of the Carboxyl-terminal leucine-122 in FMN-binding protein by mutational and structural analysis.

J Biochem 2007 Apr 29;141(4):459-68. Epub 2007 Jan 29.

Department of Applied and Bioapplied Chemistry, Graduate School of Engineering, Osaka City University, Sugimoto, Osaka, Japan.

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https://academic.oup.com/jb/article-lookup/doi/10.1093/jb/mv
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http://dx.doi.org/10.1093/jb/mvm051DOI Listing
April 2007

Crystallization and X-ray diffraction analysis of 6-aminohexanoate-cyclic-dimer hydrolase from Arthrobacter sp. KI72.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2006 Dec 4;62(Pt 12):1209-11. Epub 2006 Nov 4.

Department of Materials Science and Chemistry, Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo 671-2280, Japan.

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http://scripts.iucr.org/cgi-bin/paper?S1744309106045076
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http://dx.doi.org/10.1107/S1744309106045076DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2225356PMC
December 2006

Structure of the cadherin-related neuronal receptor/protocadherin-alpha first extracellular cadherin domain reveals diversity across cadherin families.

J Biol Chem 2006 Nov 17;281(44):33650-63. Epub 2006 Aug 17.

KOKORO Biology Group, Laboratories for Integrated Biology, Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M603298200
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http://dx.doi.org/10.1074/jbc.M603298200DOI Listing
November 2006

Mutational analysis of 6-aminohexanoate-dimer hydrolase: relationship between nylon oligomer hydrolytic and esterolytic activities.

FEBS Lett 2006 Sep 28;580(21):5054-8. Epub 2006 Aug 28.

Department of Materials Science and Chemistry, Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo 671-2280, Japan.

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http://doi.wiley.com/10.1016/j.febslet.2006.08.031
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http://dx.doi.org/10.1016/j.febslet.2006.08.031DOI Listing
September 2006

Molecular cloning and analysis of gonadal expression of Foxl2 in the medaka, Oryzias latipes.

Biochem Biophys Res Commun 2006 May;344(1):353-61

Department of Environmental System Science, Graduate School of Science and Technology, Shinshu University, Matsumoto 390-8621, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2006.03.137DOI Listing
May 2006

Increased number of anaerobic bacteria in the infected root canal in type 2 diabetic rats.

Oral Surg Oral Med Oral Pathol Oral Radiol Endod 2006 May 12;101(5):681-6. Epub 2005 Oct 12.

Department of Endodontics and Research Institute of Advanced Oral Science, School Of Dentistry, Aichi-Gakuin University, Nagoya, Japan.

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http://dx.doi.org/10.1016/j.tripleo.2005.06.007DOI Listing
May 2006

Crystallization and preliminary X-ray analysis of CooA from Carboxydothermus hydrogenoformans.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2006 May 21;62(Pt 5):471-3. Epub 2006 Apr 21.

Department of Life Science, Graduate School of Life Science, University of Hyogo, Japan.

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http://dx.doi.org/10.1107/S1744309106012826DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2219970PMC
May 2006

Release of a damaged cofactor from a coenzyme B12-dependent enzyme: X-ray structures of diol dehydratase-reactivating factor.

Structure 2005 Dec;13(12):1745-54

Graduate School of Life Science, University of Hyogo, 3-2-1 Kouto, Ako-gun, Hyogo 678-1297, Japan.

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http://dx.doi.org/10.1016/j.str.2005.08.011DOI Listing
December 2005

Structure of a conserved hypothetical protein, TTHA0849 from Thermus thermophilus HB8, at 2.4 A resolution: a putative member of the StAR-related lipid-transfer (START) domain superfamily.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2005 Dec 5;61(Pt 12):1027-31. Epub 2005 Nov 5.

Department of Life Science, Graduate School of Life Science, University of Hyogo, Himeji Institute of Technology, 3-2-1 Koto, Ako-gun, Hyogo 678-1297, Japan.

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http://scripts.iucr.org/cgi-bin/paper?S1744309105035372
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http://dx.doi.org/10.1107/S1744309105035372DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1978151PMC
December 2005

X-ray crystallographic analysis of 6-aminohexanoate-dimer hydrolase: molecular basis for the birth of a nylon oligomer-degrading enzyme.

J Biol Chem 2005 Nov 14;280(47):39644-52. Epub 2005 Sep 14.

Department of Materials Science and Chemistry, Graduate School of Engineering, University of Hyogo, Himeji, Japan.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M505946200
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http://dx.doi.org/10.1074/jbc.M505946200DOI Listing
November 2005

Activation process of [NiFe] hydrogenase elucidated by high-resolution X-ray analyses: conversion of the ready to the unready state.

Structure 2005 Nov;13(11):1635-42

Department of Life Science, Graduate School of Life Science, University of Hyogo and Himeji Institute of Technology, 3-2-1 Koto, Ako-gun, Hyogo 678-1297, Japan.

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http://dx.doi.org/10.1016/j.str.2005.07.018DOI Listing
November 2005

Crystallization and X-ray diffraction analysis of 6-aminohexanoate-dimer hydrolase from Arthrobacter sp. KI72.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2005 Oct 30;61(Pt 10):928-30. Epub 2005 Sep 30.

Department of Materials Science and Chemistry, Graduate School of Engineering, University of Hyogo, 2167 Shosha, Himeji, Hyogo 671-2201, Japan.

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http://dx.doi.org/10.1107/S1744309105028812DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1991307PMC
October 2005

Testicular type Sox9 is not involved in sex determination but might be in the development of testicular structures in the medaka, Oryzias latipes.

Biochem Biophys Res Commun 2005 Aug;333(3):729-36

Department of Environmental System Science, Graduate School of Science and Technology, Shinshu University, Matsumoto 390-8621, Japan.

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http://dx.doi.org/10.1016/j.bbrc.2005.05.158DOI Listing
August 2005

Effects of estradiol-17beta on germ cell proliferation and DMY expression during early sexual differentiation of the medaka Oryzias latipes.

Zoolog Sci 2005 Jul;22(7):791-6

Department of Environmental System Science, Graduate School of Science and Technology, Shinshu University, Matsumoto, Japan.

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http://dx.doi.org/10.2108/zsj.22.791DOI Listing
July 2005

Crystallization and preliminary X-ray analysis of molecular chaperone-like diol dehydratase-reactivating factor in ADP-bound and nucleotide-free forms.

Acta Crystallogr Sect F Struct Biol Cryst Commun 2005 Jun 1;61(Pt 6):603-5. Epub 2005 Jun 1.

Graduate School of Natural Science and Technology, Okayama University, Tsushima-Naka, Okayama 700-8530, Japan.

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http://dx.doi.org/10.1107/S1744309105015733DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1952328PMC
June 2005

Two DM domain genes, DMY and DMRT1, involved in testicular differentiation and development in the medaka, Oryzias latipes.

Dev Dyn 2004 Nov;231(3):518-26

Laboratory of Reproductive Biology, Department of Developmental Biology, National Institute for Basic Biology, Okazaki 444-8585, Japan.

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http://dx.doi.org/10.1002/dvdy.20158DOI Listing
November 2004

Crystallization and preliminary X-ray analysis of two inhibitor complexes of the catalytic domain of death-associated protein kinase.

Acta Crystallogr D Biol Crystallogr 2004 Apr 23;60(Pt 4):764-6. Epub 2004 Mar 23.

Devision of Chemistry, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

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http://scripts.iucr.org/cgi-bin/paper?S0907444904003014
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http://dx.doi.org/10.1107/S0907444904003014DOI Listing
April 2004

Developmental process of genital ducts in the medaka, Oryzias latipes.

Zoolog Sci 2004 Apr;21(4):397-406

Department of Environmental System Science, Graduate School of Science and Technology, Shinshu University, Asahi, Matsumoto 390-8621, Japan.

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http://dx.doi.org/10.2108/zsj.21.397DOI Listing
April 2004

Expression of aromatase mRNA and effects of aromatase inhibitor during ovarian development in the medaka, Oryzias latipes.

J Exp Zool A Comp Exp Biol 2004 Mar;301(3):266-73

Department of Environmental System Science, Graduate School of Science and Technology, Shinshu University, Asahi, Matsumoto 390-8621, Japan.

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http://dx.doi.org/10.1002/jez.a.20027DOI Listing
March 2004

Crystallization and MAD data collection of high-molecular weight cytochrome c from Desulfovibrio vulgaris Miyazaki F.

Protein Pept Lett 2004 Feb;11(1):93-6

Department of Life Science, Graduate School and Faculty of Science, Himeji Institute of Technology, 3-2-1 Koto, Kamigori-cho, Ako-gun, Hyogo, 678-1297, Japan.

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http://dx.doi.org/10.2174/0929866043478428DOI Listing
February 2004

X-ray induced reduction of the crystal of high-molecular-weight cytochrome c revealed by microspectrophotometry.

J Synchrotron Radiat 2004 Jan 28;11(Pt 1):113-6. Epub 2003 Nov 28.

Himeji Institute of Technology, 3-2-1 Koto, Kamigori-cho, Ako-gun, Hyogo 678-1297, Japan.

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http://dx.doi.org/10.1107/s0909049503023860DOI Listing
January 2004

Structural rationalization for the lack of stereospecificity in coenzyme B12-dependent diol dehydratase.

J Biol Chem 2003 Jun 8;278(25):22717-25. Epub 2003 Apr 8.

Department of Life Science, Graduate School of Science, Himeji Institute of Technology, 3-2-1 Kouto, Kamigori, Ako-gun, Hyogo 678-1297, Japan.

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http://dx.doi.org/10.1074/jbc.M301513200DOI Listing
June 2003

Substrate-induced conformational change of a coenzyme B12-dependent enzyme: crystal structure of the substrate-free form of diol dehydratase.

Biochemistry 2002 Oct;41(42):12607-17

Department of Life Science, Graduate School of Science, Himeji Institute of Technology, 3-2-1 Kouto, Kamigori, Ako-gun, Hyogo 678-1297, Japan.

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http://dx.doi.org/10.1021/bi026104zDOI Listing
October 2002

Sex reversal of genetic females (XX) induced by the transplantation of XY somatic cells in the medaka, Oryzias latipes.

Int J Dev Biol 2002 Aug;46(5):711-7

Graduate School of Science and Technology, Department of Environmental Science, Faculty of Science, Niigata University, Japan.

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August 2002

Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.

J Mol Biol 2002 Feb;316(3):679-91

Department of Materials Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamada-oka, Suita, Osaka 565-0871, Japan.

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http://dx.doi.org/10.1006/jmbi.2001.5381DOI Listing
February 2002