Publications by authors named "Naoki Irie"

28 Publications

  • Page 1 of 1

The developmental hourglass model and recapitulation: An attempt to integrate the two models.

J Exp Zool B Mol Dev Evol 2021 Jan 27. Epub 2021 Jan 27.

Department of Biological Sciences, The University of Tokyo, Tokyo, Japan.

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January 2021

How can recapitulation be reconciled with modern concepts of evolution?

J Exp Zool B Mol Dev Evol 2020 Dec 31. Epub 2020 Dec 31.

Department of Biological Sciences and Universal Biology Institute, The University of Tokyo, Tokyo, Japan.

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December 2020

In the spotlight-Established researcher.

Authors:
Naoki Irie

J Exp Zool B Mol Dev Evol 2020 Sep 17. Epub 2020 Sep 17.

Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo, Japan.

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September 2020

Toward understanding of evolutionary constraints: experimental and theoretical approaches.

Biophys Rev 2020 Oct 22;12(5):1155-1161. Epub 2020 Jun 22.

Universal Biology Institute, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.

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October 2020

The developmental transcriptome for Lytechinus variegatus exhibits temporally punctuated gene expression changes.

Dev Biol 2020 04 6;460(2):139-154. Epub 2019 Dec 6.

Program in Bioinformatics, Boston University, Boston, MA, USA; Biology Department, Boston University, Boston, MA, USA; Program in Molecular and Cellular Biology and Biochemistry, Boston University, Boston, MA, USA. Electronic address:

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April 2020

Recapitulation-like developmental transitions of chromatin accessibility in vertebrates.

Zoological Lett 2019 14;5:33. Epub 2019 Nov 14.

1Department of Biological Sciences, The University of Tokyo, Tokyo, Japan.

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November 2019

The phylum Vertebrata: a case for zoological recognition.

Zoological Lett 2018 26;4:32. Epub 2018 Dec 26.

Laboratory for Evolutionary Morphology, RIKEN Center for Biosystems Dynamics Research, and Evolutionary Morphology Laboratory, RIKEN Cluster for Pioneering Research, 2-2-3 Minatojima-minami, Chuo-ku, Kobe, 650-0047 Japan.

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December 2018

Embryonic lethality is not sufficient to explain hourglass-like conservation of vertebrate embryos.

Evodevo 2018 16;9. Epub 2018 Mar 16.

1Department of Biological Sciences, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033 Japan.

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March 2018

Centromere evolution and CpG methylation during vertebrate speciation.

Nat Commun 2017 11 28;8(1):1833. Epub 2017 Nov 28.

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8583, Japan.

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November 2017

Weighted gene co-expression network analysis reveals potential genes involved in early metamorphosis process in sea cucumber Apostichopus japonicus.

Biochem Biophys Res Commun 2018 01 24;495(1):1395-1402. Epub 2017 Nov 24.

State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China. Electronic address:

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January 2018

Remaining questions related to the hourglass model in vertebrate evolution.

Authors:
Naoki Irie

Curr Opin Genet Dev 2017 Aug 6;45:103-107. Epub 2017 May 6.

Department of Biological Sciences, The University of Tokyo, Tokyo, Japan; Universal Biology Institute, The University of Tokyo, Tokyo, Japan. Electronic address:

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August 2017

Unexpected link between polyketide synthase and calcium carbonate biomineralization.

Zoological Lett 2015 13;1. Epub 2015 Jan 13.

Department of Biological Sciences, Graduate School of Science, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033 Japan.

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November 2015

The developmental hourglass model: a predictor of the basic body plan?

Development 2014 Dec;141(24):4649-55

Group for Morphological Evolution, RIKEN Center for Developmental Biology, Kobe 650-0047, Japan

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December 2014

Turtle ghrelin.

Nat Genet 2014 Jun;46(6):526

Department of Biological Sciences, The University of Tokyo, Tokyo, Japan.

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June 2014

The evolutionary origin of the vertebrate body plan: the problem of head segmentation.

Annu Rev Genomics Hum Genet 2014 2;15:443-59. Epub 2014 Jun 2.

Laboratory for Evolutionary Morphology, RIKEN Center for Developmental Biology, Kobe 650-0047, Japan; email: , ,

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May 2015

Comparative transcriptome analysis reveals vertebrate phylotypic period during organogenesis.

Nat Commun 2011 ;2:248

Laboratory for Evolutionary Morphology, RIKEN Center for Developmental Biology, Chuo-ku, Kobe, Hyogo 650-0047, Japan.

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August 2011

Biliary atresia: a new immunological insight into etiopathogenesis.

Expert Rev Gastroenterol Hepatol 2009 Dec;3(6):599-606

Department of Pediatric Surgery, Ibaraki Children's Hospital, Mito, 311-4145, Japan.

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December 2009

Maternal HLA class I compatibility in patients with biliary atresia.

J Pediatr Gastroenterol Nutr 2009 Oct;49(4):488-92

Department of Anatomy and Developmental Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.

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October 2009

The vertebrate phylotypic stage and an early bilaterian-related stage in mouse embryogenesis defined by genomic information.

BMC Biol 2007 Jan 12;5. Epub 2007 Jan 12.

Department of Growth Regulation, Institute for Frontier Medical Sciences, Kyoto University, Kawahara-cho 53, Shogo-in, Kyoto 606-8507, Japan.

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January 2007

Essential roles of Meltrin beta (ADAM19) in heart development.

Dev Biol 2004 Mar;267(1):14-28

Department of Growth Regulation, Institute for Frontier Medical Sciences, Kyoto University, Sakyo-ku, Kyoto 606-8507, Japan.

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March 2004

Subtype- and species-specific knockdown of PKC using short interfering RNA.

Biochem Biophys Res Commun 2002 Nov;298(5):738-43

Laboratory of Molecular Pharmacology, Biosignal Research Center, Kobe University, Japan.

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November 2002