Nadereh Jafari

Nadereh Jafari

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Nadereh Jafari

Nadereh Jafari

Publications by authors named "Nadereh Jafari"

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31Publications

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Blood Epigenetic Age may Predict Cancer Incidence and Mortality.

EBioMedicine 2016 Mar 8;5:68-73. Epub 2016 Feb 8.

Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA; Robert H. Lurie Comprehensive Cancer Center, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.

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http://dx.doi.org/10.1016/j.ebiom.2016.02.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4816845PMC
March 2016

CpGFilter: model-based CpG probe filtering with replicates for epigenome-wide association studies.

Bioinformatics 2016 Feb 7;32(3):469-71. Epub 2015 Oct 7.

Department of Biostatistics, Harvard School of Public Health, Boston, MA 02115.

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http://dx.doi.org/10.1093/bioinformatics/btv577DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4757944PMC
February 2016

Evaluation of commercially available RNA amplification kits for RNA sequencing using very low input amounts of total RNA.

J Biomol Tech 2015 Apr;26(1):4-18

1 Genomic Division, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, Florida 32610, USA; 2 Stowers Institute for Medical Research, Kansas City, Missouri 64112, USA; 3 Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202-5122, USA; 4 Department of Pathology and Laboratory Medicine, Boston University School of Medicine, Boston, Massachusetts 02118, USA; 5 Research Technology Support Facility, Office of the Vice President for Research and Graduate Studies, Michigan State University, East Lansing, Michigan 48824, USA; 6 DNA Core Facility,Office of Research, University of Missouri, Columbia, Missouri 65211, USA; 7 New Jersey Medical School-Molecular Resource Facility, Rutgers Biomedical and Health Sciences, Rutgers University, Newark, New Jersey 08863, USA; 8 College of Medicine, Laboratory for Molecular Biology and Cytometry Research, Department of Microbiology and Immunology, The University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104, USA; 9 Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, Pennsylvania 16802, USA; 10 Department of Orthopaedic Surgery and Biomedical Engineering, College of Medicine, University of Tennessee Health Sciences Center, Memphis, Tennessee 38163, USA; 11 Genomics Core Facility Center for Genetic Medicine, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA; 12 Norris Cotton Cancer Center, Geisel School of Medicine at Dartmouth College, Hanover, New Hampshire 03756, USA; 13 University of Michigan DNA Sequencing Core, Biomedical Research Core Facilities, University of Michigan, Ann Arbor, Michigan 48109, USA; 14 Department of Biochemistry and Molecular Medicine, University of California-Davis, School of Medicine, Sacramento, California 95817, USA; and 15 Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los

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http://dx.doi.org/10.7171/jbt.15-2601-001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4310221PMC
April 2015

Central role of ULK1 in type I interferon signaling.

Cell Rep 2015 Apr 16;11(4):605-17. Epub 2015 Apr 16.

Robert H. Lurie Comprehensive Cancer Center and Division of Hematology-Oncology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; Division of Hematology-Oncology, Department of Medicine, Jesse Brown Veterans Affairs Medical Center, Chicago, IL 60612, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2015.03.056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4477687PMC
April 2015

Genome-wide analysis of small RNAs expressed by Yersinia pestis identifies a regulator of the Yop-Ysc type III secretion system.

J Bacteriol 2014 May 14;196(9):1659-70. Epub 2014 Feb 14.

Northwestern University Feinberg School of Medicine, Department of Microbiology-Immunology, Chicago, Illinois, USA.

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http://dx.doi.org/10.1128/JB.01456-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3993326PMC
May 2014

The inflammatory gene pathway is not a major contributor to polycystic ovary snydrome.

J Clin Endocrinol Metab 2014 Mar 1;99(3):E567-71. Epub 2014 Jan 1.

Division of Endocrinology, Metabolism, and Molecular Medicine (S.B., P.M., O.A.G., A.D., M.U.) and Center for Genetic Medicine (N.J.), Northwestern University Feinberg School of Medicine, Chicago, Illinois 60611; and Department of Obstetrics and Gynecology (R.S.L.), Pennsylvania State University, College of Medicine, Hershey, Pennsylvania 17033.

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http://dx.doi.org/10.1210/jc.2013-2342DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3942235PMC
March 2014

Genome-wide DNA methylation analysis predicts an epigenetic switch for GATA factor expression in endometriosis.

PLoS Genet 2014 Mar 6;10(3):e1004158. Epub 2014 Mar 6.

Division of Reproductive Biology Research, Dept. Obstetrics and Gynecology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1004158DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3945170PMC
March 2014

Evidence for chromosome 2p16.3 polycystic ovary syndrome susceptibility locus in affected women of European ancestry.

J Clin Endocrinol Metab 2013 Jan 1;98(1):E185-90. Epub 2012 Nov 1.

Division of Endocrinology, Metabolism, and Molecular Medicine, Northwestern University Feinberg School of Medicine, 303 East Chicago Avenue, Chicago, Illinois 60611, USA.

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http://dx.doi.org/10.1210/jc.2012-2471DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3537106PMC
January 2013

Genome-wide study of DNA methylation alterations in response to diazinon exposure in vitro.

Environ Toxicol Pharmacol 2012 Nov 1;34(3):959-68. Epub 2012 Aug 1.

Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.

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http://dx.doi.org/10.1016/j.etap.2012.07.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3514648PMC
November 2012

A Parallel Study of mRNA and microRNA Profiling of Peripheral Blood in Young Adult Women.

Front Genet 2011 18;2:49. Epub 2011 Jul 18.

Center of Excellence in Clinical Immunology and Neurosurgery Research Program, Children's Memorial Research Center Chicago, IL, USA.

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http://dx.doi.org/10.3389/fgene.2011.00049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268602PMC
October 2012

The role of inflammatory pathway genetic variation on maternal metabolic phenotypes during pregnancy.

PLoS One 2012 30;7(3):e32958. Epub 2012 Mar 30.

Division of Endocrinology, Metabolism and Molecular Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0032958PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3316547PMC
August 2012

DNA methylation alterations in response to pesticide exposure in vitro.

Environ Mol Mutagen 2012 Aug 30;53(7):542-9. Epub 2012 Jul 30.

Department of Preventive Medicine, Feinberg School of Medicine, Northwestern University, Chicago, Illinois 60611, USA.

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http://dx.doi.org/10.1002/em.21718DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753688PMC
August 2012

Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for virulence.

Proc Natl Acad Sci U S A 2011 Sep 29;108(37):E709-17. Epub 2011 Aug 29.

Department of Microbiology-Immunology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.

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http://dx.doi.org/10.1073/pnas.1101655108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174644PMC
September 2011

Transcription coactivator mediator subunit MED1 is required for the development of fatty liver in the mouse.

Hepatology 2011 Apr;53(4):1164-74

Department of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL; Laboratory of Animal Fat Deposition and Muscle Development, College of Animal Science and Technology, Northwest A&F University, Shaanxi, China.

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http://dx.doi.org/10.1002/hep.24155DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3076129PMC
April 2011

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis.

BMC Bioinformatics 2010 Nov 30;11:587. Epub 2010 Nov 30.

Northwestern University Biomedical Informatics Center (NUBIC), NUCATS, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.

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http://dx.doi.org/10.1186/1471-2105-11-587DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3012676PMC
November 2010

Loqs and R2D2 act sequentially in the siRNA pathway in Drosophila.

Nat Struct Mol Biol 2010 Jan 27;17(1):24-30. Epub 2009 Dec 27.

Department of Biochemistry, Molecular Biology and Cell Biology, Northwestern University, Evanston, Illinois, USA.

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http://dx.doi.org/10.1038/nsmb.1735DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2919300PMC
January 2010

Genomics of human intracranial aneurysm wall.

Stroke 2009 Apr 19;40(4):1252-61. Epub 2009 Feb 19.

Department of Neurological Surgery, Center for Genetic Medicine, and Robert H. Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, Chicago, Ill 60611, USA.

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http://dx.doi.org/10.1161/STROKEAHA.108.532036DOI Listing
April 2009

Overexpression of RhoA induces preneoplastic transformation of primary mammary epithelial cells.

Cancer Res 2009 Jan;69(2):483-91

Department of Genetics, Eppley Institute for Cancer and Allied Diseases and UNMC-Eppley Cancer Center, University of Nebraska Medical Center, Omaha, Nebraska 68198, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-08-2907DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2792911PMC
January 2009

Studies of gene expression in human cumulus cells indicate pentraxin 3 as a possible marker for oocyte quality.

Fertil Steril 2005 Apr;83 Suppl 1:1169-79

Section of Reproductive Endocrinology and Infertility, Department of Obstetrics and Gynecology, Northwestern University Feinberg School of Medicine, 675 North Saint Clair Street, Chicago, IL 60611, USA.

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http://dx.doi.org/10.1016/j.fertnstert.2004.11.030DOI Listing
April 2005