Publications by authors named "Mustafa H Syed"

16Publications

KBase: The United States Department of Energy Systems Biology Knowledgebase.

Nat Biotechnol 2018 07;36(7):566-569

Computer Science and Math, Computer Science Initiative, Brookhaven National Laboratory, Upton, New York, USA.

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http://dx.doi.org/10.1038/nbt.4163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6870991PMC
July 2018

Erratum: Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients.

Authors:
Ahmet Zehir Ryma Benayed Ronak H Shah Aijazuddin Syed Sumit Middha Hyunjae R Kim Preethi Srinivasan Jianjiong Gao Debyani Chakravarty Sean M Devlin Matthew D Hellmann David A Barron Alison M Schram Meera Hameed Snjezana Dogan Dara S Ross Jaclyn F Hechtman Deborah F DeLair JinJuan Yao Diana L Mandelker Donavan T Cheng Raghu Chandramohan Abhinita S Mohanty Ryan N Ptashkin Gowtham Jayakumaran Meera Prasad Mustafa H Syed Anoop Balakrishnan Rema Zhen Y Liu Khedoudja Nafa Laetitia Borsu Justyna Sadowska Jacklyn Casanova Ruben Bacares Iwona J Kiecka Anna Razumova Julie B Son Lisa Stewart Tessara Baldi Kerry A Mullaney Hikmat Al-Ahmadie Efsevia Vakiani Adam A Abeshouse Alexander V Penson Philip Jonsson Niedzica Camacho Matthew T Chang Helen H Won Benjamin E Gross Ritika Kundra Zachary J Heins Hsiao-Wei Chen Sarah Phillips Hongxin Zhang Jiaojiao Wang Angelica Ochoa Jonathan Wills Michael Eubank Stacy B Thomas Stuart M Gardos Dalicia N Reales Jesse Galle Robert Durany Roy Cambria Wassim Abida Andrea Cercek Darren R Feldman Mrinal M Gounder A Ari Hakimi James J Harding Gopa Iyer Yelena Y Janjigian Emmet J Jordan Ciara M Kelly Maeve A Lowery Luc G T Morris Antonio M Omuro Nitya Raj Pedram Razavi Alexander N Shoushtari Neerav Shukla Tara E Soumerai Anna M Varghese Rona Yaeger Jonathan Coleman Bernard Bochner Gregory J Riely Leonard B Saltz Howard I Scher Paul J Sabbatini Mark E Robson David S Klimstra Barry S Taylor Jose Baselga Nikolaus Schultz David M Hyman Maria E Arcila David B Solit Marc Ladanyi Michael F Berger

Nat Med 2017 08;23(8):1004

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http://dx.doi.org/10.1038/nm0817-1004cDOI Listing
August 2017

Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients.

Authors:
Ahmet Zehir Ryma Benayed Ronak H Shah Aijazuddin Syed Sumit Middha Hyunjae R Kim Preethi Srinivasan Jianjiong Gao Debyani Chakravarty Sean M Devlin Matthew D Hellmann David A Barron Alison M Schram Meera Hameed Snjezana Dogan Dara S Ross Jaclyn F Hechtman Deborah F DeLair JinJuan Yao Diana L Mandelker Donavan T Cheng Raghu Chandramohan Abhinita S Mohanty Ryan N Ptashkin Gowtham Jayakumaran Meera Prasad Mustafa H Syed Anoop Balakrishnan Rema Zhen Y Liu Khedoudja Nafa Laetitia Borsu Justyna Sadowska Jacklyn Casanova Ruben Bacares Iwona J Kiecka Anna Razumova Julie B Son Lisa Stewart Tessara Baldi Kerry A Mullaney Hikmat Al-Ahmadie Efsevia Vakiani Adam A Abeshouse Alexander V Penson Philip Jonsson Niedzica Camacho Matthew T Chang Helen H Won Benjamin E Gross Ritika Kundra Zachary J Heins Hsiao-Wei Chen Sarah Phillips Hongxin Zhang Jiaojiao Wang Angelica Ochoa Jonathan Wills Michael Eubank Stacy B Thomas Stuart M Gardos Dalicia N Reales Jesse Galle Robert Durany Roy Cambria Wassim Abida Andrea Cercek Darren R Feldman Mrinal M Gounder A Ari Hakimi James J Harding Gopa Iyer Yelena Y Janjigian Emmet J Jordan Ciara M Kelly Maeve A Lowery Luc G T Morris Antonio M Omuro Nitya Raj Pedram Razavi Alexander N Shoushtari Neerav Shukla Tara E Soumerai Anna M Varghese Rona Yaeger Jonathan Coleman Bernard Bochner Gregory J Riely Leonard B Saltz Howard I Scher Paul J Sabbatini Mark E Robson David S Klimstra Barry S Taylor Jose Baselga Nikolaus Schultz David M Hyman Maria E Arcila David B Solit Marc Ladanyi Michael F Berger

Nat Med 2017 Jun 8;23(6):703-713. Epub 2017 May 8.

Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, New York, USA.

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http://www.nature.com/doifinder/10.1038/nm.4333
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http://dx.doi.org/10.1038/nm.4333DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5461196PMC
June 2017

LacI Transcriptional Regulatory Networks in Clostridium thermocellum DSM1313.

Appl Environ Microbiol 2017 03 15;83(5). Epub 2017 Feb 15.

BioEnergy Science Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA

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http://dx.doi.org/10.1128/AEM.02751-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5311418PMC
March 2017

Industrial robustness: understanding the mechanism of tolerance for the Populus hydrolysate-tolerant mutant strain of Clostridium thermocellum.

PLoS One 2013 21;8(10):e78829. Epub 2013 Oct 21.

Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee, United States of America ; Bioenergy Science Center, Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0078829PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3804516PMC
August 2014

Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA.

Gene Regul Syst Bio 2012 30;6:93-107. Epub 2012 May 30.

Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA.

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http://journals.sagepub.com/doi/10.4137/GRSB.S9357
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http://dx.doi.org/10.4137/GRSB.S9357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370831PMC
August 2012

Sentra: a database of signal transduction proteins for comparative genome analysis.

Nucleic Acids Res 2007 Jan 29;35(Database issue):D271-3. Epub 2006 Nov 29.

Computational Biology Group, Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA.

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http://dx.doi.org/10.1093/nar/gkl949DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1751548PMC
January 2007

PUMA2--grid-based high-throughput analysis of genomes and metabolic pathways.

Nucleic Acids Res 2006 Jan;34(Database issue):D369-72

Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60439, USA.

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http://dx.doi.org/10.1093/nar/gkj095DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347457PMC
January 2006