Mukesh Bansal

Mukesh Bansal

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Mukesh Bansal

Mukesh Bansal

Publications by authors named "Mukesh Bansal"

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41Publications

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FGF-induced Pea3 transcription factors program the genetic landscape for cell fate determination.

PLoS Genet 2018 09 6;14(9):e1007660. Epub 2018 Sep 6.

Departments of Ophthalmology, Pathology and Cell Biology, Columbia University, New York, NY, United States of America.

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https://dx.plos.org/10.1371/journal.pgen.1007660
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http://dx.doi.org/10.1371/journal.pgen.1007660DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143274PMC
September 2018

The number of titrated microRNA species dictates ceRNA regulation.

Nucleic Acids Res 2018 05;46(9):4354-4369

Department of Systems Biology, Institute for Cancer Genetics, Herbert Irving Comprehensive Cancer Center, Center for Computational Biology and Bioinformatics, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1093/nar/gky286DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5961349PMC
May 2018

Alx4 relays sequential FGF signaling to induce lacrimal gland morphogenesis.

PLoS Genet 2017 Oct 13;13(10):e1007047. Epub 2017 Oct 13.

Departments of Ophthalmology, Pathology and Cell Biology, Columbia University, New York, NY, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007047DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5656309PMC
October 2017

High-throughput validation of ceRNA regulatory networks.

BMC Genomics 2017 05 30;18(1):418. Epub 2017 May 30.

Columbia Department of Systems Biology, Center for Computational Biology and Bioinformatics, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, 10032, USA.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864
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http://dx.doi.org/10.1186/s12864-017-3790-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5450082PMC
May 2017

Functional Effectiveness of Inpatient Rehabilitation After Heart Transplantation.

PM R 2016 09 12;8(9):855-9. Epub 2016 Feb 12.

Division of PM&R, University of Minnesota Medical Center, M Health, Minneapolis, MN(‖).

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http://dx.doi.org/10.1016/j.pmrj.2016.01.015DOI Listing
September 2016

DREAMTools: a Python package for scoring collaborative challenges.

F1000Res 2015 9;4:1030. Epub 2015 Oct 9.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI),Wellcome Trust Genome Campus, Cambridge, UK; RWTH Aachen University Medical Hospital, Joint Research Centre for Computational Biomedicine (JRCCOMBINE), Aachen, Germany.

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http://dx.doi.org/10.12688/f1000research.7118.2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4837986PMC
May 2016

ABC transporters and the proteasome complex are implicated in susceptibility to Stevens-Johnson syndrome and toxic epidermal necrolysis across multiple drugs.

PLoS One 2015 25;10(6):e0131038. Epub 2015 Jun 25.

Department of Systems Biology, Columbia University, New York, New York, United States of America; Department of Biomedical Informatics, Columbia University, New York, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0131038PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4482486PMC
May 2016

Elucidation and Pharmacological Targeting of Novel Molecular Drivers of Follicular Lymphoma Progression.

Cancer Res 2016 Feb 20;76(3):664-74. Epub 2015 Nov 20.

Department of Systems Biology, Columbia University, New York, New York.

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http://dx.doi.org/10.1158/0008-5472.CAN-15-0828DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4738055PMC
February 2016

Elucidating Compound Mechanism of Action by Network Perturbation Analysis.

Cell 2015 Jul;162(2):441-451

Department of Biomedical Informatics (DBMI), Columbia University, New York, NY 10032, USA; Department of Systems Biology, Columbia University, New York, NY 10032, USA; Center for Computational Biology and Bioinformatics (C2B2), Columbia University, New York, NY 10032, USA; Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA; Institute for Cancer Genetics, Columbia University, New York, NY 10032, USA; Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY 10032, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2015.05.056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4506491PMC
July 2015

Inferring protein modulation from gene expression data using conditional mutual information.

PLoS One 2014 14;9(10):e109569. Epub 2014 Oct 14.

Department of Systems Biology, Columbia University, New York, New York, United States of America; Center for Computational Biology and Bioinformatics, Columbia University, New York, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0109569PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4196905PMC
June 2015

A community computational challenge to predict the activity of pairs of compounds.

Nat Biotechnol 2014 Dec 17;32(12):1213-22. Epub 2014 Nov 17.

1] Department of Systems Biology, Columbia University, New York, New York, USA. [2] Center for Computational Biology and Bioinformatics, Columbia University, New York, New York, USA. [3] Department of Biomedical Informatics, Columbia University, New York, New York, USA. [4] Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, USA. [5] Institute for Cancer Genetics, Columbia University, New York, New York, USA. [6] Herbert Irving Comprehensive Cancer Center, Columbia University, New York, New York, USA.

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http://dx.doi.org/10.1038/nbt.3052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4399794PMC
December 2014

Convection-enhanced delivery of etoposide is effective against murine proneural glioblastoma.

Neuro Oncol 2014 Sep 16;16(9):1210-9. Epub 2014 Mar 16.

Gabriele Bartoli Brain Tumor Laboratory, Department of Neurosurgery, Irving Research Cancer Center, Columbia University Medical Center, New York, New York (A.M.S., A.S.C., B.A., R.L., J.Y., C.S., R.R., J.O, P.C., J.N.B.); Department of Systems Biology, Columbia University, New York, New York (M.B., A.C.); Center for Computational Biology and Bioinformatics, Columbia University, New York, New York (M.B., A.C.); Department of Pathology and Cell Biology, Irving Research Cancer Center, Columbia University Medical Center, New York, New York (L.L.); High Throughput Screening Center, Columbia University Medical Center Judith P. Sulzberger Genome Center, New York, New York (R.R., H.L., C.K.); Department of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, New York (A.C.); Department of Biomedical Informatics, Columbia University, New York, New York (A.C.); Institute for Cancer Genetics, Columbia University, New York, New York (A.C.); Herbert Irving Comprehensive Cancer Center, Columbia University, New York, New York (A.C.).

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http://dx.doi.org/10.1093/neuonc/nou026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136893PMC
September 2014

ZFHX4 interacts with the NuRD core member CHD4 and regulates the glioblastoma tumor-initiating cell state.

Cell Rep 2014 Jan 16;6(2):313-24. Epub 2014 Jan 16.

Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA; Department of Neurology, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA; Human Oncology and Pathogenesis Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.

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http://dx.doi.org/10.1016/j.celrep.2013.12.032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4041390PMC
January 2014

Discovering drug mode of action using reverse-engineered gene networks.

Conf Proc IEEE Eng Med Biol Soc 2005 ;5:4739-42

Mukesh Bansal is PhD Student at Telethon Institute of Genetics and Medicine (TIGEM), Via P.Castellino 111, Naples 80131, Italy.

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http://dx.doi.org/10.1109/IEMBS.2005.1615530DOI Listing
October 2012

Genome-wide dissection of posttranscriptional and posttranslational interactions.

Methods Mol Biol 2012 ;786:131-49

Joint Centers for Systems Biology, Columbia University, New York, NY, USA.

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http://dx.doi.org/10.1007/978-1-61779-292-2_8DOI Listing
February 2012

Mass conservation and inference of metabolic networks from high-throughput mass spectrometry data.

J Comput Biol 2011 Feb;18(2):147-54

Center for Computational Biology and Bioinformatics, Joint Centers for Systems Biology, and Columbia Initiative in Systems Biology, Columbia University, New York, New York, USA.

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http://dx.doi.org/10.1089/cmb.2010.0222DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3123861PMC
February 2011

How to infer gene networks from expression profiles.

Mol Syst Biol 2007 13;3:78. Epub 2007 Feb 13.

Telethon Institute of Genetics and Medicine, Via P Castellino, Naples, Italy.

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http://dx.doi.org/10.1038/msb4100120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1828749PMC
March 2007

Computational framework for the prediction of transcription factor binding sites by multiple data integration.

BMC Neurosci 2006 Oct 30;7 Suppl 1:S8. Epub 2006 Oct 30.

TIGEM, Telethon Institute of Genetics and Medicine, Naples, Italy.

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http://dx.doi.org/10.1186/1471-2202-7-S1-S8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1775048PMC
October 2006

Inference of gene regulatory networks and compound mode of action from time course gene expression profiles.

Bioinformatics 2006 Apr 17;22(7):815-22. Epub 2006 Jan 17.

Telethon Institute of Genetics and Medicine, Via P. Castellino 111, 80131 Naples, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btl003DOI Listing
April 2006