Morgan C Giddings

Morgan C Giddings

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Morgan C Giddings

Morgan C Giddings

Publications by authors named "Morgan C Giddings"

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26Publications

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Comparative genome analysis of ciprofloxacin-resistant Pseudomonas aeruginosa reveals genes within newly identified high variability regions associated with drug resistance development.

Microb Drug Resist 2013 Dec 29;19(6):428-36. Epub 2013 Jun 29.

1 Department of Biochemistry & Biophysics, UNC School of Medicine , Chapel Hill, North Carolina.

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http://dx.doi.org/10.1089/mdr.2012.0258DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3889496PMC
December 2013

A peptide-spectrum scoring system based on ion alignment, intensity, and pair probabilities.

J Proteome Res 2013 Sep 8;12(9):4240-7. Epub 2013 Aug 8.

Department of Biochemistry & Biophysics, UNC School of Medicine, Chapel Hill, North Carolina 27599, United States.

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http://dx.doi.org/10.1021/pr400286pDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4117239PMC
September 2013

Peppy: proteogenomic search software.

J Proteome Res 2013 Jun 6;12(6):3019-25. Epub 2013 May 6.

Department of Biochemistry & Biophysics, UNC School of Medicine, Chapel Hill, North Carolina 27599, United States.

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http://pubs.acs.org/doi/10.1021/pr400208w
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http://dx.doi.org/10.1021/pr400208wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4117251PMC
June 2013

Agent-based modeling of competence phenotype switching in Bacillus subtilis.

Theor Biol Med Model 2013 Apr 3;10:23. Epub 2013 Apr 3.

Syngenta Biotechnology, Inc., 3054 Cornwallis Rd., Research Triangle Park, NC 27709, USA.

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http://dx.doi.org/10.1186/1742-4682-10-23DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3648451PMC
April 2013

GOFAST: an integrated approach for efficient and comprehensive membrane proteome analysis.

Anal Chem 2012 Nov 25;84(21):9008-14. Epub 2012 Oct 25.

Department of Biochemistry & Biophysics, University of North Carolina at Chapel Hill, North Carolina 27599, United States.

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http://dx.doi.org/10.1021/ac300134eDOI Listing
November 2012

Landscape of transcription in human cells.

Nature 2012 Sep;489(7414):101-8

Centre for Genomic Regulation and UPF, Doctor Aiguader 88, Barcelona 08003, Catalonia, Spain.

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http://dx.doi.org/10.1038/nature11233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3684276PMC
September 2012

Automated data integration and determination of posttranslational modifications with the protein inference engine.

Methods Mol Biol 2011 ;694:255-90

Department of Bioinformatics & Computational Biology, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

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http://dx.doi.org/10.1007/978-1-60761-977-2_17DOI Listing
February 2011

The development of ciprofloxacin resistance in Pseudomonas aeruginosa involves multiple response stages and multiple proteins.

Antimicrob Agents Chemother 2010 Nov 9;54(11):4626-35. Epub 2010 Aug 9.

Department of Microbiology and Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.

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http://aac.asm.org/cgi/doi/10.1128/AAC.00762-10
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http://dx.doi.org/10.1128/AAC.00762-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2976116PMC
November 2010

An agent-based model of signal transduction in bacterial chemotaxis.

PLoS One 2010 May 13;5(5):e9454. Epub 2010 May 13.

Department of Computer Science, University of North Carolina, Chapel Hill, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0009454PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2869346PMC
May 2010

Ultra-Structure database design methodology for managing systems biology data and analyses.

BMC Bioinformatics 2009 Aug 19;10:254. Epub 2009 Aug 19.

Department of Microbiology and Immunology, UNC Chapel Hill, NC, USA.

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http://www.biomedcentral.com/1471-2105/10/254
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http://dx.doi.org/10.1186/1471-2105-10-254DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2748085PMC
August 2009

Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA.

RNA 2009 Jul 20;15(7):1314-21. Epub 2009 May 20.

Department of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1261/rna.1536209DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2704086PMC
July 2009

ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis.

RNA 2008 Oct 4;14(10):1979-90. Epub 2008 Sep 4.

Department of Biomedical Engineering, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.

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http://www.rnajournal.org/cgi/doi/10.1261/rna.1166808
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http://dx.doi.org/10.1261/rna.1166808DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553743PMC
October 2008

Incorporating sequence information into the scoring function: a hidden Markov model for improved peptide identification.

Bioinformatics 2008 Mar 10;24(5):674-81. Epub 2008 Jan 10.

Department of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btn011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2699941PMC
March 2008

Using GFS to identify encoding genomic loci from protein mass spectral data.

Curr Protoc Bioinformatics 2008 Mar;Chapter 13:Unit 13.9

Department of Microbiology and Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.

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http://dx.doi.org/10.1002/0471250953.bi1309s21DOI Listing
March 2008

High-accuracy peptide mass fingerprinting using peak intensity data with machine learning.

J Proteome Res 2008 Jan 3;7(1):62-9. Epub 2007 Oct 3.

Department of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.

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http://pubs.acs.org/doi/abs/10.1021/pr070088g
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http://dx.doi.org/10.1021/pr070088gDOI Listing
January 2008

Mapping phosphoproteins in Mycoplasma genitalium and Mycoplasma pneumoniae.

BMC Microbiol 2007 Jul 2;7:63. Epub 2007 Jul 2.

Department of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1186/1471-2180-7-63DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1947986PMC
July 2007

Fragmentation characteristics of collision-induced dissociation in MALDI TOF/TOF mass spectrometry.

Anal Chem 2007 Apr 17;79(8):3032-40. Epub 2007 Mar 17.

Department of Microbiology & Immunology, University of North Carolina at Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1021/ac061455vDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553356PMC
April 2007

Tracking the evolution of alternatively spliced exons within the Dscam family.

BMC Evol Biol 2006 Feb 16;6:16. Epub 2006 Feb 16.

Department of Microbiology and Immunology, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1186/1471-2148-6-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1397879PMC
February 2006

GFSWeb: a web tool for genome-based identification of proteins from mass spectrometric samples.

J Proteome Res 2004 Nov-Dec;3(6):1292-5

Department of Microbiology & Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599-7290, USA.

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http://dx.doi.org/10.1021/pr049879yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1351070PMC
April 2005