Publications by authors named "Montserrat Aguade"

48Publications

The molecular genealogy of sequential overlapping inversions implies both homologous chromosomes of a heterokaryotype in an inversion origin.

Sci Rep 2019 11 18;9(1):17009. Epub 2019 Nov 18.

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia, i Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

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November 2019

The molecular characterization of fixed inversions breakpoints unveils the ancestral character of the Drosophila guanche chromosomal arrangements.

Sci Rep 2019 02 8;9(1):1706. Epub 2019 Feb 8.

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

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February 2019

The High-Quality Genome Sequence of the Oceanic Island Endemic Species Drosophila guanche Reveals Signals of Adaptive Evolution in Genes Related to Flight and Genome Stability.

Genome Biol Evol 2018 08 1;10(8):1956-1969. Epub 2018 Aug 1.

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia, i Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Spain.

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August 2018

Inversion evolutionary rates might limit the experimental identification of inversion breakpoints in non-model species.

Sci Rep 2017 12 8;7(1):17281. Epub 2017 Dec 8.

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

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December 2017

Characterization of dFOXO binding sites upstream of the Insulin Receptor P2 promoter across the Drosophila phylogeny.

PLoS One 2017 4;12(12):e0188357. Epub 2017 Dec 4.

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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December 2017

An easy route to the massive karyotyping of complex chromosomal arrangements in Drosophila.

Sci Rep 2017 10 5;7(1):12717. Epub 2017 Oct 5.

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, 08028, Barcelona, Spain.

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October 2017

Dense gene physical maps of the non-model species Drosophila subobscura.

Chromosome Res 2017 06 11;25(2):145-154. Epub 2017 Jan 11.

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

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June 2017

Multiple and diverse structural changes affect the breakpoint regions of polymorphic inversions across the Drosophila genus.

Sci Rep 2016 10 26;6:36248. Epub 2016 Oct 26.

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

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October 2016

The origin of chromosomal inversions as a source of segmental duplications in the Sophophora subgenus of Drosophila.

Sci Rep 2016 07 29;6:30715. Epub 2016 Jul 29.

Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

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July 2016

Inferring the demographic history of Drosophila subobscura from nucleotide variation at regions not affected by chromosomal inversions.

Mol Ecol 2015 Apr 6;24(8):1729-41. Epub 2015 Apr 6.

Departament de Genètica, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, 08028, Barcelona, Spain.

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April 2015

Evidence for a gene involved in multiple and diverse rearrangements in the Drosophila genus.

Mol Biol Evol 2014 Nov 18;31(11):2998-3001. Epub 2014 Aug 18.

Departament de Genètica, Facultat de Biologia, i Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain

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November 2014

Characterization of the breakpoints of a polymorphic inversion complex detects strict and broad breakpoint reuse at the molecular level.

Mol Biol Evol 2014 Sep 30;31(9):2331-41. Epub 2014 May 30.

Departament de Genètica, Facultat de Biologia, i Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain

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September 2014

Comment on "The Molecular Evolutionary Patterns of the Insulin/FOXO Signaling Pathway".

Evol Bioinform Online 2013 10;9:229-34. Epub 2013 Jun 10.

Laboratorio de Biología Integrativa de Sistemas, Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-Universidad Politécnica de Valencia, Valencia, Spain.

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July 2013

Polymorphism at genes involved in salt tolerance in Arabidopsis thaliana (Brassicaceae).

Am J Bot 2013 Feb 23;100(2):384-90. Epub 2013 Jan 23.

Departament de Genètica, Facultat de Biologia, i Institut de Recerca de la Biodiversitat, Universitat de Barcelona, Diagonal 643, 08028 Barcelona, Spain.

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February 2013

Patterns of nucleotide diversity at the regions encompassing the Drosophila insulin-like peptide (dilp) genes: demography vs. positive selection in Drosophila melanogaster.

PLoS One 2013 7;8(1):e53593. Epub 2013 Jan 7.

Departament de Genètica, i Institut de Recerca de la Biodiversitat, Universitat de Barcelona, Barcelona, Spain.

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July 2013

Structure and population genetics of the breakpoints of a polymorphic inversion in Drosophila subobscura.

Evolution 2013 Jan 19;67(1):66-79. Epub 2012 Jul 19.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, i Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.

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January 2013

Molecular population genetics of the insulin/TOR signal transduction pathway: a network-level analysis in Drosophila melanogaster.

Mol Biol Evol 2012 Jan 16;29(1):123-32. Epub 2011 Jun 16.

Departament de Genètica, i Institut de Recerca de la Biodiversitat, Universitat de Barcelona, Barcelona, Spain.

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January 2012

Molecular evolution of the ligands of the insulin-signaling pathway: dilp genes in the genus Drosophila.

Mol Biol Evol 2011 May 31;28(5):1557-60. Epub 2010 Dec 31.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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May 2011

Comparative genomics of the vertebrate insulin/TOR signal transduction pathway: a network-level analysis of selective pressures.

Genome Biol Evol 2011 13;3:87-101. Epub 2010 Dec 13.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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April 2011

Odorant receptor (Or) genes: polymorphism and divergence in the D. melanogaster and D. pseudoobscura lineages.

PLoS One 2010 Oct 13;5(10):e13389. Epub 2010 Oct 13.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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October 2010

Nonrecombining genes in a recombination environment: the Drosophila "dot" chromosome.

Mol Biol Evol 2011 Jan 12;28(1):825-33. Epub 2010 Oct 12.

Department of Ecology and Evolutionary Biology, Yale University.

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January 2011

Uncovering the footprint of positive selection on the X chromosome of Drosophila melanogaster.

Mol Biol Evol 2010 Jan;27(1):153-60

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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January 2010

Positive selection has driven the evolution of the Drosophila insulin-like receptor (InR) at different timescales.

Mol Biol Evol 2009 Aug 27;26(8):1723-32. Epub 2009 Apr 27.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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August 2009

Network-level molecular evolutionary analysis of the insulin/TOR signal transduction pathway across 12 Drosophila genomes.

Genome Res 2009 Feb 13;19(2):234-42. Epub 2009 Jan 13.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona 08028, Spain.

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February 2009

Nucleotide and copy-number polymorphism at the odorant receptor genes Or22a and Or22b in Drosophila melanogaster.

Mol Biol Evol 2009 Jan 14;26(1):61-70. Epub 2008 Oct 14.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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January 2009

Genetic exchange versus genetic differentiation in a medium-sized inversion of Drosophila: the A2/Ast arrangements of Drosophila subobscura.

Mol Biol Evol 2008 Aug 23;25(8):1534-43. Epub 2008 Apr 23.

Centro de Estudos da Macaronésia, Departamento de Biologia, Universidade da Madeira, Funchal, Portugal.

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August 2008

High incidence of interchromosomal transpositions in the evolutionary history of a subset of or genes in Drosophila.

J Mol Evol 2008 Apr 11;66(4):325-32. Epub 2008 Mar 11.

Departament de Genètica, Universitat de Barcelona, Av. Diagonal, 645, Barcelona 08028, Spain.

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April 2008

Evolution of genes and genomes on the Drosophila phylogeny.

Authors:
Andrew G Clark Michael B Eisen Douglas R Smith Casey M Bergman Brian Oliver Therese A Markow Thomas C Kaufman Manolis Kellis William Gelbart Venky N Iyer Daniel A Pollard Timothy B Sackton Amanda M Larracuente Nadia D Singh Jose P Abad Dawn N Abt Boris Adryan Montserrat Aguade Hiroshi Akashi Wyatt W Anderson Charles F Aquadro David H Ardell Roman Arguello Carlo G Artieri Daniel A Barbash Daniel Barker Paolo Barsanti Phil Batterham Serafim Batzoglou Dave Begun Arjun Bhutkar Enrico Blanco Stephanie A Bosak Robert K Bradley Adrianne D Brand Michael R Brent Angela N Brooks Randall H Brown Roger K Butlin Corrado Caggese Brian R Calvi A Bernardo de Carvalho Anat Caspi Sergio Castrezana Susan E Celniker Jean L Chang Charles Chapple Sourav Chatterji Asif Chinwalla Alberto Civetta Sandra W Clifton Josep M Comeron James C Costello Jerry A Coyne Jennifer Daub Robert G David Arthur L Delcher Kim Delehaunty Chuong B Do Heather Ebling Kevin Edwards Thomas Eickbush Jay D Evans Alan Filipski Sven Findeiss Eva Freyhult Lucinda Fulton Robert Fulton Ana C L Garcia Anastasia Gardiner David A Garfield Barry E Garvin Greg Gibson Don Gilbert Sante Gnerre Jennifer Godfrey Robert Good Valer Gotea Brenton Gravely Anthony J Greenberg Sam Griffiths-Jones Samuel Gross Roderic Guigo Erik A Gustafson Wilfried Haerty Matthew W Hahn Daniel L Halligan Aaron L Halpern Gillian M Halter Mira V Han Andreas Heger LaDeana Hillier Angie S Hinrichs Ian Holmes Roger A Hoskins Melissa J Hubisz Dan Hultmark Melanie A Huntley David B Jaffe Santosh Jagadeeshan William R Jeck Justin Johnson Corbin D Jones William C Jordan Gary H Karpen Eiko Kataoka Peter D Keightley Pouya Kheradpour Ewen F Kirkness Leonardo B Koerich Karsten Kristiansen Dave Kudrna Rob J Kulathinal Sudhir Kumar Roberta Kwok Eric Lander Charles H Langley Richard Lapoint Brian P Lazzaro So-Jeong Lee Lisa Levesque Ruiqiang Li Chiao-Feng Lin Michael F Lin Kerstin Lindblad-Toh Ana Llopart Manyuan Long Lloyd Low Elena Lozovsky Jian Lu Meizhong Luo Carlos A Machado Wojciech Makalowski Mar Marzo Muneo Matsuda Luciano Matzkin Bryant McAllister Carolyn S McBride Brendan McKernan Kevin McKernan Maria Mendez-Lago Patrick Minx Michael U Mollenhauer Kristi Montooth Stephen M Mount Xu Mu Eugene Myers Barbara Negre Stuart Newfeld Rasmus Nielsen Mohamed A F Noor Patrick O'Grady Lior Pachter Montserrat Papaceit Matthew J Parisi Michael Parisi Leopold Parts Jakob S Pedersen Graziano Pesole Adam M Phillippy Chris P Ponting Mihai Pop Damiano Porcelli Jeffrey R Powell Sonja Prohaska Kim Pruitt Marta Puig Hadi Quesneville Kristipati Ravi Ram David Rand Matthew D Rasmussen Laura K Reed Robert Reenan Amy Reily Karin A Remington Tania T Rieger Michael G Ritchie Charles Robin Yu-Hui Rogers Claudia Rohde Julio Rozas Marc J Rubenfield Alfredo Ruiz Susan Russo Steven L Salzberg Alejandro Sanchez-Gracia David J Saranga Hajime Sato Stephen W Schaeffer Michael C Schatz Todd Schlenke Russell Schwartz Carmen Segarra Rama S Singh Laura Sirot Marina Sirota Nicholas B Sisneros Chris D Smith Temple F Smith John Spieth Deborah E Stage Alexander Stark Wolfgang Stephan Robert L Strausberg Sebastian Strempel David Sturgill Granger Sutton Granger G Sutton Wei Tao Sarah Teichmann Yoshiko N Tobari Yoshihiko Tomimura Jason M Tsolas Vera L S Valente Eli Venter J Craig Venter Saverio Vicario Filipe G Vieira Albert J Vilella Alfredo Villasante Brian Walenz Jun Wang Marvin Wasserman Thomas Watts Derek Wilson Richard K Wilson Rod A Wing Mariana F Wolfner Alex Wong Gane Ka-Shu Wong Chung-I Wu Gabriel Wu Daisuke Yamamoto Hsiao-Pei Yang Shiaw-Pyng Yang James A Yorke Kiyohito Yoshida Evgeny Zdobnov Peili Zhang Yu Zhang Aleksey V Zimin Jennifer Baldwin Amr Abdouelleil Jamal Abdulkadir Adal Abebe Brikti Abera Justin Abreu St Christophe Acer Lynne Aftuck Allen Alexander Peter An Erica Anderson Scott Anderson Harindra Arachi Marc Azer Pasang Bachantsang Andrew Barry Tashi Bayul Aaron Berlin Daniel Bessette Toby Bloom Jason Blye Leonid Boguslavskiy Claude Bonnet Boris Boukhgalter Imane Bourzgui Adam Brown Patrick Cahill Sheridon Channer Yama Cheshatsang Lisa Chuda Mieke Citroen Alville Collymore Patrick Cooke Maura Costello Katie D'Aco Riza Daza Georgius De Haan Stuart DeGray Christina DeMaso Norbu Dhargay Kimberly Dooley Erin Dooley Missole Doricent Passang Dorje Kunsang Dorjee Alan Dupes Richard Elong Jill Falk Abderrahim Farina Susan Faro Diallo Ferguson Sheila Fisher Chelsea D Foley Alicia Franke Dennis Friedrich Loryn Gadbois Gary Gearin Christina R Gearin Georgia Giannoukos Tina Goode Joseph Graham Edward Grandbois Sharleen Grewal Kunsang Gyaltsen Nabil Hafez Birhane Hagos Jennifer Hall Charlotte Henson Andrew Hollinger Tracey Honan Monika D Huard Leanne Hughes Brian Hurhula M Erii Husby Asha Kamat Ben Kanga Seva Kashin Dmitry Khazanovich Peter Kisner Krista Lance Marcia Lara William Lee Niall Lennon Frances Letendre Rosie LeVine Alex Lipovsky Xiaohong Liu Jinlei Liu Shangtao Liu Tashi Lokyitsang Yeshi Lokyitsang Rakela Lubonja Annie Lui Pen MacDonald Vasilia Magnisalis Kebede Maru Charles Matthews William McCusker Susan McDonough Teena Mehta James Meldrim Louis Meneus Oana Mihai Atanas Mihalev Tanya Mihova Rachel Mittelman Valentine Mlenga Anna Montmayeur Leonidas Mulrain Adam Navidi Jerome Naylor Tamrat Negash Thu Nguyen Nga Nguyen Robert Nicol Choe Norbu Nyima Norbu Nathaniel Novod Barry O'Neill Sahal Osman Eva Markiewicz Otero L Oyono Christopher Patti Pema Phunkhang Fritz Pierre Margaret Priest Sujaa Raghuraman Filip Rege Rebecca Reyes Cecil Rise Peter Rogov Keenan Ross Elizabeth Ryan Sampath Settipalli Terry Shea Ngawang Sherpa Lu Shi Diana Shih Todd Sparrow Jessica Spaulding John Stalker Nicole Stange-Thomann Sharon Stavropoulos Catherine Stone Christopher Strader Senait Tesfaye Talene Thomson Yama Thoulutsang Dawa Thoulutsang Kerri Topham Ira Topping Tsamla Tsamla Helen Vassiliev Andy Vo Tsering Wangchuk Tsering Wangdi Michael Weiand Jane Wilkinson Adam Wilson Shailendra Yadav Geneva Young Qing Yu Lisa Zembek Danni Zhong Andrew Zimmer Zac Zwirko David B Jaffe Pablo Alvarez Will Brockman Jonathan Butler CheeWhye Chin Sante Gnerre Manfred Grabherr Michael Kleber Evan Mauceli Iain MacCallum

Nature 2007 Nov;450(7167):203-18

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

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November 2007

The dynamics of the roo transposable element in mutation-accumulation lines and segregating populations of Drosophila melanogaster.

Genetics 2007 Sep;177(1):511-22

Departamento de Genética, Facultad de Biología, Universidad de Barcelona, 08028 Barcelona, Spain.

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September 2007

Genome scans of variation and adaptive change: extended analysis of a candidate locus close to the phantom gene region in Drosophila melanogaster.

Mol Biol Evol 2007 May 24;24(5):1122-9. Epub 2007 Feb 24.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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May 2007

Chromosomal evolution of elements B and C in the Sophophora subgenus of Drosophila: evolutionary rate and polymorphism.

Evolution 2006 Apr;60(4):768-81

Department de Genètica, Facultat de Biologia, Universitat de Barcelona, 08028 Barcelona, Spain.

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April 2006

DNA sequence polymorphism and divergence at the erect wing and suppressor of sable loci of Drosophila melanogaster and D. simulans.

Genetics 2005 Jul 8;170(3):1153-65. Epub 2005 Jun 8.

Department of Biology, Georgetown University, Washington, DC 20057-1229, USA.

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July 2005

Birth-and-death evolution of the Cecropin multigene family in Drosophila.

J Mol Evol 2005 Jan;60(1):1-11

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Spain.

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January 2005

Chromosomal inversion polymorphism leads to extensive genetic structure: a multilocus survey in Drosophila subobscura.

Genetics 2005 Mar 31;169(3):1573-81. Epub 2005 Jan 31.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Spain.

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March 2005

Detecting the footprint of positive selection in a european population of Drosophila melanogaster: multilocus pattern of variation and distance to coding regions.

Genetics 2004 Aug;167(4):1759-66

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, 08028 Barcelona, Spain.

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August 2004

Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata.

Genetics 2004 Jan;166(1):373-88

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, 08028 Barcelona, Spain.

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January 2004

Comparative molecular population genetics of the Xdh locus in the cactophilic sibling species Drosophila buzzatii and D. koepferae.

Mol Biol Evol 2004 Jan 31;21(1):141-52. Epub 2003 Oct 31.

Departamento de Ecología, Genética y Evolución, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Buenos Aires, Argentina.

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January 2004

Large-scale adaptive hitchhiking upon high recombination in Drosophila simulans.

Genetics 2003 Oct;165(2):895-900

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Diagonal 645, 08028 Barcelona, Spain.

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October 2003

Nucleotide polymorphism in the RpII215 gene region of the insular species Drosophila guanche: reduced efficacy of weak selection on synonymous variation.

Mol Biol Evol 2003 Nov 28;20(11):1867-75. Epub 2003 Jul 28.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Barcelona, Spain.

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November 2003

Excess of nonsynonymous polymorphism at Acph-1 in different gene arrangements of Drosophila subobscura.

Mol Biol Evol 2003 Nov 27;20(11):1833-43. Epub 2003 Jun 27.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Spain.

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November 2003

CLINES OF CHROMOSOMAL ARRANGEMENTS OF DROSOPHILA SUBOBSCURA IN SOUTH AMERICA EVOLVE CLOSER TO OLD WORLD PATTERNS.

Evolution 1990 Feb;44(1):218-221

Department of Genetics, Faculty of Biology, University of Barcelona, 08028, Barcelona, SPAIN.

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February 1990

THE COLONIZATION OF DROSOPHILA SUBOBSCURA IN CHILE. II. CLINES IN THE CHROMOSOMAL ARRANGEMENTS.

Evolution 1985 Jul;39(4):838-844

Department of Genetics, Faculty of Biology, University of Barcelona, Barcelona, 08028, Spain.

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July 1985