Mohammad Fallahi-Sichani

Mohammad Fallahi-Sichani

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Mohammad Fallahi-Sichani

Mohammad Fallahi-Sichani

Publications by authors named "Mohammad Fallahi-Sichani"

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21Publications

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Phenotype-based probabilistic analysis of heterogeneous responses to cancer drugs and their combination efficacy.

PLoS Comput Biol 2020 Feb 21;16(2):e1007688. Epub 2020 Feb 21.

Department of Biomedical Engineering, University of Michigan Medical School, Ann Arbor, Michigan, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1007688DOI Listing
February 2020

Epigenetic Mechanisms of Escape from BRAF Oncogene Dependency.

Cancers (Basel) 2019 Oct 1;11(10). Epub 2019 Oct 1.

Department of Biomedical Engineering, University of Michigan Medical School, Ann Arbor, MI 48109, USA.

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http://dx.doi.org/10.3390/cancers11101480DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6826668PMC
October 2019

Coordination of the leucine-sensing Rag GTPase cycle by leucyl-tRNA synthetase in the mTORC1 signaling pathway.

Proc Natl Acad Sci U S A 2018 06 21;115(23):E5279-E5288. Epub 2018 May 21.

Department of Integrated OMICS for Biomedical Science, Yonsei University, Seoul 03722, South Korea;

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http://dx.doi.org/10.1073/pnas.1801287115DOI Listing
June 2018

The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations.

Authors:
Alexandra B Keenan Sherry L Jenkins Kathleen M Jagodnik Simon Koplev Edward He Denis Torre Zichen Wang Anders B Dohlman Moshe C Silverstein Alexander Lachmann Maxim V Kuleshov Avi Ma'ayan Vasileios Stathias Raymond Terryn Daniel Cooper Michele Forlin Amar Koleti Dusica Vidovic Caty Chung Stephan C Schürer Jouzas Vasiliauskas Marcin Pilarczyk Behrouz Shamsaei Mehdi Fazel Yan Ren Wen Niu Nicholas A Clark Shana White Naim Mahi Lixia Zhang Michal Kouril John F Reichard Siva Sivaganesan Mario Medvedovic Jaroslaw Meller Rick J Koch Marc R Birtwistle Ravi Iyengar Eric A Sobie Evren U Azeloglu Julia Kaye Jeannette Osterloh Kelly Haston Jaslin Kalra Steve Finkbiener Jonathan Li Pamela Milani Miriam Adam Renan Escalante-Chong Karen Sachs Alex Lenail Divya Ramamoorthy Ernest Fraenkel Gavin Daigle Uzma Hussain Alyssa Coye Jeffrey Rothstein Dhruv Sareen Loren Ornelas Maria Banuelos Berhan Mandefro Ritchie Ho Clive N Svendsen Ryan G Lim Jennifer Stocksdale Malcolm S Casale Terri G Thompson Jie Wu Leslie M Thompson Victoria Dardov Vidya Venkatraman Andrea Matlock Jennifer E Van Eyk Jacob D Jaffe Malvina Papanastasiou Aravind Subramanian Todd R Golub Sean D Erickson Mohammad Fallahi-Sichani Marc Hafner Nathanael S Gray Jia-Ren Lin Caitlin E Mills Jeremy L Muhlich Mario Niepel Caroline E Shamu Elizabeth H Williams David Wrobel Peter K Sorger Laura M Heiser Joe W Gray James E Korkola Gordon B Mills Mark LaBarge Heidi S Feiler Mark A Dane Elmar Bucher Michel Nederlof Damir Sudar Sean Gross David F Kilburn Rebecca Smith Kaylyn Devlin Ron Margolis Leslie Derr Albert Lee Ajay Pillai

Cell Syst 2018 01 29;6(1):13-24. Epub 2017 Nov 29.

NIH, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/j.cels.2017.11.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5799026PMC
January 2018

Cyclic Immunofluorescence (CycIF), A Highly Multiplexed Method for Single-cell Imaging.

Curr Protoc Chem Biol 2016 Dec 7;8(4):251-264. Epub 2016 Dec 7.

HMS LINCS Center, Laboratory of Systems Pharmacology, Department of Systems Biology, Harvard Medical School, Boston, Massachusetts.

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http://dx.doi.org/10.1002/cpch.14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5233430PMC
December 2016

Reverse Phase Protein Arrays for Compound Profiling.

Curr Protoc Chem Biol 2016 09 13;8(3):179-196. Epub 2016 Sep 13.

Harvard Medical School-Department of Systems Biology, Boston, Massachusetts.

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http://dx.doi.org/10.1002/cpch.9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5613289PMC
September 2016

Highly multiplexed imaging of single cells using a high-throughput cyclic immunofluorescence method.

Nat Commun 2015 Sep 24;6:8390. Epub 2015 Sep 24.

HMS LINCS Center &Laboratory of Systems Pharmacology, Harvard Medical School, Boston, Massachusetts 02115 USA.

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http://dx.doi.org/10.1038/ncomms9390DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4587398PMC
September 2015

Tuneable resolution as a systems biology approach for multi-scale, multi-compartment computational models.

Wiley Interdiscip Rev Syst Biol Med 2014 Jul-Aug;6(4):289-309. Epub 2014 May 9.

Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.

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http://dx.doi.org/10.1002/wsbm.1270DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4102180PMC
February 2015

Metrics other than potency reveal systematic variation in responses to cancer drugs.

Nat Chem Biol 2013 Nov 8;9(11):708-14. Epub 2013 Sep 8.

Harvard Medical School Library of Integrated Network-based Cellular Signatures Center, Department of Systems Biology, Harvard Medical School, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1038/nchembio.1337DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3947796PMC
November 2013

NF-κB Signaling Dynamics Play a Key Role in Infection Control in Tuberculosis.

Front Physiol 2012 6;3:170. Epub 2012 Jun 6.

Department of Chemical Engineering, University of Michigan Ann Arbor, MI, USA.

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http://dx.doi.org/10.3389/fphys.2012.00170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368390PMC
October 2012

Differential risk of tuberculosis reactivation among anti-TNF therapies is due to drug binding kinetics and permeability.

J Immunol 2012 Apr 29;188(7):3169-78. Epub 2012 Feb 29.

Department of Chemical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.

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http://dx.doi.org/10.4049/jimmunol.1103298DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3311778PMC
April 2012

Identification of key processes that control tumor necrosis factor availability in a tuberculosis granuloma.

PLoS Comput Biol 2010 May 6;6(5):e1000778. Epub 2010 May 6.

Department of Chemical Engineering, University of Michigan, Ann Arbor, MI, USA.

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http://dx.doi.org/10.1371/journal.pcbi.1000778DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2865521PMC
May 2010

In vitro differentiation of cord blood unrestricted somatic stem cells expressing dopamine-associated genes into neuron-like cells.

Cell Biol Int 2007 Mar 19;31(3):299-303. Epub 2006 Nov 19.

Department of Biotechnology, University College of Science, University of Tehran, Tehran 14155-6455, Iran.

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http://dx.doi.org/10.1016/j.cellbi.2006.11.011DOI Listing
March 2007

Gene expression patterns define novel roles for E47 in cell cycle progression, cytokine-mediated signaling, and T lineage development.

Proc Natl Acad Sci U S A 2006 Jun 16;103(26):9976-81. Epub 2006 Jun 16.

Division of Biological Sciences, University of California at San Diego, La Jolla, CA 92093-0377, USA.

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http://dx.doi.org/10.1073/pnas.0603728103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1502564PMC
June 2006

Analysis of transcription factor expression during discrete stages of postnatal thymocyte differentiation.

J Immunol 2004 Jul;173(2):1094-102

Department of Microbiology and Immunology, University of Miami School of Medicine, Miami, FL 33101, USA.

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http://dx.doi.org/10.4049/jimmunol.173.2.1094DOI Listing
July 2004