Publications by authors named "Mohamed Abouelhoda"

63Publications

Correction to: IonCRAM: a reference-based compression tool for ion torrent sequence files.

BMC Bioinformatics 2020 Oct 6;21(1):435. Epub 2020 Oct 6.

King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1186/s12859-020-03766-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7541227PMC
October 2020

Genetic study of pediatric hypertrophic cardiomyopathy in Egypt.

Cardiol Young 2020 Oct 5:1-7. Epub 2020 Oct 5.

Clinical and Chemical Pathology Department, Faculty of Medicine, Cairo University, Cairo, Egypt.

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http://dx.doi.org/10.1017/S1047951120003157DOI Listing
October 2020

IonCRAM: a reference-based compression tool for ion torrent sequence files.

BMC Bioinformatics 2020 Sep 9;21(1):397. Epub 2020 Sep 9.

King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1186/s12859-020-03726-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7487613PMC
September 2020

Sequencing and assembly of the Egyptian buffalo genome.

PLoS One 2020 19;15(8):e0237087. Epub 2020 Aug 19.

Systems and Biomedical Engineering Department, Faculty of Engineering, Cairo University, Giza, Egypt.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0237087PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7437910PMC
October 2020

Genetic Alterations in Pediatric Thyroid Cancer Using a Comprehensive Childhood Cancer Gene Panel.

J Clin Endocrinol Metab 2020 Oct;105(10)

Department of Genetics, King Faisal Specialist Hospital & Research Centre, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1210/clinem/dgaa389DOI Listing
October 2020

Whole exome sequencing in ADHD trios from single and multi-incident families implicates new candidate genes and highlights polygenic transmission.

Eur J Hum Genet 2020 Aug 1;28(8):1098-1110. Epub 2020 Apr 1.

Behavioral Genetics unit, Department of Genetics, King Faisal Specialist Hospital and Research Center, P.O Box 3354, Riyadh, 11211, Saudi Arabia.

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http://dx.doi.org/10.1038/s41431-020-0619-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7382449PMC
August 2020

Mutational profile and genotype/phenotype correlation of non-familial pheochromocytoma and paraganglioma.

Oncotarget 2019 Oct 15;10(57):5919-5931. Epub 2019 Oct 15.

Department of Molecular Oncology, King Faisal Specialist Hospital and Research Centre, Riyadh 11211, Saudi Arabia.

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http://dx.doi.org/10.18632/oncotarget.27194DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6800268PMC
October 2019

New insights into the genomic landscape of meningiomas identified FGFR3 in a subset of patients with favorable prognoses.

Oncotarget 2019 Sep 17;10(53):5549-5559. Epub 2019 Sep 17.

Genomics Research Department, Saudi Human Genome Project, King Fahad Medical City and King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.18632/oncotarget.27178DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6756861PMC
September 2019

Relative reduction of biological and phylogenetic diversity of the oral microbiota of diabetes and pre-diabetes patients.

Microb Pathog 2019 Mar 6;128:215-229. Epub 2019 Jan 6.

Saudi Human Genome Project, King Abdulaziz City for Science and Technology (KACST), Riyadh, Saudi Arabia; Genetics Department, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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https://linkinghub.elsevier.com/retrieve/pii/S08824010183168
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http://dx.doi.org/10.1016/j.micpath.2019.01.009DOI Listing
March 2019

De novo truncating variants in WHSC1 recapitulate the Wolf-Hirschhorn (4p16.3 microdeletion) syndrome phenotype.

Genet Med 2019 01 11;21(1):185-188. Epub 2018 Jun 11.

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1038/s41436-018-0014-8DOI Listing
January 2019

Genome sequencing and analysis of the first spontaneous Nanosilver resistant bacterium strain SCDR1.

Antimicrob Resist Infect Control 2017 23;6:119. Epub 2017 Nov 23.

Genetics Department, King Faisal Specialist Hospital and Research Center, Riyadh, Kingdom of Saudi Arabia.

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http://dx.doi.org/10.1186/s13756-017-0277-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5701452PMC
June 2018

The landscape of genetic diseases in Saudi Arabia based on the first 1000 diagnostic panels and exomes.

Authors:
Dorota Monies Mohamed Abouelhoda Moeenaldeen AlSayed Zuhair Alhassnan Maha Alotaibi Husam Kayyali Mohammed Al-Owain Ayaz Shah Zuhair Rahbeeni Mohammad A Al-Muhaizea Hamad I Alzaidan Edward Cupler Saeed Bohlega Eissa Faqeih Maha Faden Banan Alyounes Dyala Jaroudi Ewa Goljan Hadeel Elbardisy Asma Akilan Renad Albar Hesham Aldhalaan Shamshad Gulab Aziza Chedrawi Bandar K Al Saud Wesam Kurdi Nawal Makhseed Tahani Alqasim Heba Y El Khashab Hamoud Al-Mousa Amal Alhashem Imaduddin Kanaan Talal Algoufi Khalid Alsaleem Talal A Basha Fathiya Al-Murshedi Sameena Khan Adila Al-Kindy Maha Alnemer Sami Al-Hajjar Suad Alyamani Hasan Aldhekri Ali Al-Mehaidib Rand Arnaout Omar Dabbagh Mohammad Shagrani Dieter Broering Maha Tulbah Amal Alqassmi Maisoon Almugbel Mohammed AlQuaiz Abdulaziz Alsaman Khalid Al-Thihli Raashda A Sulaiman Wajeeh Al-Dekhail Abeer Alsaegh Fahad A Bashiri Alya Qari Suzan Alhomadi Hisham Alkuraya Mohammed Alsebayel Muddathir H Hamad Laszlo Szonyi Faisal Abaalkhail Sulaiman M Al-Mayouf Hamad Almojalli Khalid S Alqadi Hussien Elsiesy Taghreed M Shuaib Mohammed Zain Seidahmed Ibraheem Abosoudah Hana Akleh Abdulaziz AlGhonaium Turki M Alkharfy Fuad Al Mutairi Wafa Eyaid Abdullah Alshanbary Farrukh R Sheikh Fahad I Alsohaibani Abdullah Alsonbul Saeed Al Tala Soher Balkhy Randa Bassiouni Ahmed S Alenizi Maged H Hussein Saeed Hassan Mohamed Khalil Brahim Tabarki Saad Alshahwan Amira Oshi Yasser Sabr Saad Alsaadoun Mustafa A Salih Sarar Mohamed Habiba Sultana Abdullah Tamim Moayad El-Haj Saif Alshahrani Dalal K Bubshait Majid Alfadhel Tariq Faquih Mohamed El-Kalioby Shazia Subhani Zeeshan Shah Nabil Moghrabi Brian F Meyer Fowzan S Alkuraya

Hum Genet 2017 08 9;136(8):921-939. Epub 2017 Jun 9.

Deparment of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1007/s00439-017-1821-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5502059PMC
August 2017

The Use of Next-Generation Sequencing in the Identification of a Fastidious Pathogen: A Lesson From a Clinical Setup.

Evol Bioinform Online 2017 3;12:1176934316686072. Epub 2017 Feb 3.

Saudi Human Genome Program, King Abdulaziz City for Science and Technology (KACST), Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1177/1176934316686072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5395265PMC
February 2017

MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants.

BMC Bioinformatics 2017 Jan 20;18(1):49. Epub 2017 Jan 20.

Center for Informatics Sciences, Nile University, Juhayna Square, Sheikh Zayed, Giza, Egypt.

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http://dx.doi.org/10.1186/s12859-016-1454-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5248509PMC
January 2017

Unique Features of Germline Variation in Five Egyptian Familial Breast Cancer Families Revealed by Exome Sequencing.

PLoS One 2017 11;12(1):e0167581. Epub 2017 Jan 11.

Department of Genetics, Cell Biology and Anatomy, College of Medicine, University of Nebraska Medical Center, Omaha, Nebraska, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0167581PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5226826PMC
August 2017

Revisiting the morbid genome of Mendelian disorders.

Genome Biol 2016 11 24;17(1):235. Epub 2016 Nov 24.

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1186/s13059-016-1102-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5123336PMC
November 2016

Clinical heterogeneity of PLA2G6-related Parkinsonism: analysis of two Saudi families.

BMC Res Notes 2016 Jun 7;9:295. Epub 2016 Jun 7.

Behavioral Genetics Unit, Department of Genetics, King Faisal Specialist Hospital and Research Center, P.O Box 3354, Riyadh, 11211, Saudi Arabia.

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http://dx.doi.org/10.1186/s13104-016-2102-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4897907PMC
June 2016

Clinical genomics can facilitate countrywide estimation of autosomal recessive disease burden.

Genet Med 2016 12 28;18(12):1244-1249. Epub 2016 Apr 28.

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1038/gim.2016.37DOI Listing
December 2016

Early detection of hepatocellular carcinoma co-occurring with hepatitis C virus infection: A mathematical model.

World J Gastroenterol 2016 Apr;22(16):4168-82

Abdel-Rahman Nabawy Zekri, Amira Salah El-Din Youssef, Yasser Mabrouk Bakr, Reham Mohamed Gabr, Ola Sayed Ahmed, Mostafa Hamed Elberry, Ahmed Mahmoud Mayla, Molecular Virology and Immunology Unit, Cancer Biology Department, National Cancer Institute, Cairo University, Cairo 11976, Egypt.

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http://dx.doi.org/10.3748/wjg.v22.i16.4168DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4837434PMC
April 2016

A null mutation in TNIK defines a novel locus for intellectual disability.

Hum Genet 2016 07 22;135(7):773-8. Epub 2016 Apr 22.

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1007/s00439-016-1671-9DOI Listing
July 2016

Mutations in SMG9, Encoding an Essential Component of Nonsense-Mediated Decay Machinery, Cause a Multiple Congenital Anomaly Syndrome in Humans and Mice.

Am J Hum Genet 2016 Apr 24;98(4):643-52. Epub 2016 Mar 24.

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh 11211, Saudi Arabia; Department of Anatomy and Cell Biology, College of Medicine, Alfaisal University, Riyadh 11533, Saudi Arabia. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2016.02.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833216PMC
April 2016

Confirming the candidacy of THOC6 in the etiology of intellectual disability.

Am J Med Genet A 2016 May 6;170A(5):1367-9. Epub 2016 Jan 6.

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1002/ajmg.a.37549DOI Listing
May 2016

Identification of a novel MKS locus defined by TMEM107 mutation.

Hum Mol Genet 2015 Sep 29;24(18):5211-8. Epub 2015 Jun 29.

Department of Genetics and Saudi Human Genome Program, King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia, Department of Anatomy and Cell Biology, College of Medicine, Alfaisal University, Riyadh, Saudi Arabia

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http://dx.doi.org/10.1093/hmg/ddv242DOI Listing
September 2015

Expanding phenotypic and allelic heterogeneity of tricho-hepato-enteric syndrome.

J Pediatr Gastroenterol Nutr 2015 Mar;60(3):352-6

*Department of Genetics, Research Centre, King Faisal Specialist Hospital and Research Centre †Saudi Human Genome Program, King Abdulaziz City for Science and Technology ‡Department of Medical Genetics, Riyadh, Kingdom of Saudi Arabia.

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http://dx.doi.org/10.1097/MPG.0000000000000627DOI Listing
March 2015

Accelerating novel candidate gene discovery in neurogenetic disorders via whole-exome sequencing of prescreened multiplex consanguineous families.

Cell Rep 2015 Jan 31;10(2):148-61. Epub 2014 Dec 31.

Department of Genetics, King Faisal Specialist Hospital and Research Center, Riyadh 11211, Saudi Arabia; Department of Anatomy and Cell Biology, College of Medicine, Alfaisal University, Riyadh 11533, Saudi Arabia; Saudi Human Genome Program, King Abdulaziz City for Science and Technology, Riyadh 11442, Saudi Arabia. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2014.12.015DOI Listing
January 2015

Association of a mutation in LACC1 with a monogenic form of systemic juvenile idiopathic arthritis.

Arthritis Rheumatol 2015 Jan;67(1):288-95

King Faisal Specialist Hospital and Research Centre, and King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1002/art.38877DOI Listing
January 2015

Using the Sadakane compressed suffix tree to solve the all-pairs suffix-prefix problem.

Biomed Res Int 2014 16;2014:745298. Epub 2014 Apr 16.

Faculty of Engineering, Cairo University, Giza, Egypt ; Center for Informatics Sciences, Nile University, Giza, Egypt.

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http://dx.doi.org/10.1155/2014/745298DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4009283PMC
December 2014

Streaming support for data intensive cloud-based sequence analysis.

Biomed Res Int 2013 24;2013:791051. Epub 2013 Apr 24.

Center for Informatics Sciences, Nile University, Giza, Egypt.

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http://dx.doi.org/10.1155/2013/791051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3655485PMC
December 2013

Molecular prognostic profile of Egyptian HCC cases infected with hepatitis C virus.

Asian Pac J Cancer Prev 2012 ;13(11):5433-8

Virology and Immunology Unit, Cancer Biology Department, National Cancer Institute, Cairo, Egypt.

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http://dx.doi.org/10.7314/apjcp.2012.13.11.5433DOI Listing
July 2013

A hybrid method for the exact planted (l, d) motif finding problem and its parallelization.

BMC Bioinformatics 2012 13;13 Suppl 17:S10. Epub 2012 Dec 13.

Department of Basic Sciences, Faculty of Engineering, Sinai University, El-Arish, Egypt.

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http://dx.doi.org/10.1186/1471-2105-13-S17-S10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3521218PMC
May 2013

Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support.

BMC Bioinformatics 2012 May 4;13:77. Epub 2012 May 4.

Center for Informatics Sciences, Nile University, Giza, Egypt.

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http://dx.doi.org/10.1186/1471-2105-13-77DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3583125PMC
May 2012

WAMI: a web server for the analysis of minisatellite maps.

BMC Evol Biol 2010 Jun 6;10:167. Epub 2010 Jun 6.

Center for Informatics Sciences, Nile University, Giza, Egypt.

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http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2148-10-167DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2897807PMC
June 2010

Alignment of minisatellite maps based on run-length encoding scheme.

J Bioinform Comput Biol 2009 Apr;7(2):287-308

Cairo University, Giza, Egypt.

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http://dx.doi.org/10.1142/s0219720009004060DOI Listing
April 2009

A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions.

BMC Bioinformatics 2008 Dec 4;9:516. Epub 2008 Dec 4.

Institute of Theoretical Computer Science, University of Ulm, Ulm, Germany.

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http://dx.doi.org/10.1186/1471-2105-9-516DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2655097PMC
December 2008

CoCoNUT: an efficient system for the comparison and analysis of genomes.

BMC Bioinformatics 2008 Nov 12;9:476. Epub 2008 Nov 12.

Faculty of Engineering, Cairo University, Giza, Egypt.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-9-476DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3224568PMC
November 2008