Publications by authors named "Mohamed A F Noor"

86Publications

PseudoBase: a genomic visualization and exploration resource for the subgroup.

Fly (Austin) 2021 Dec;15(1):38-44

Biology Department, Duke University , Durham, NC, USA.

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December 2021

Natural Selection Shapes Variation in Genome-wide Recombination Rate in Drosophila pseudoobscura.

Curr Biol 2020 04 9;30(8):1517-1528.e6. Epub 2020 Apr 9.

Department of Biology, Duke University, Durham, NC 27708, USA.

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April 2020

Pervasive gene conversion in chromosomal inversion heterozygotes.

Mol Ecol 2019 03 10;28(6):1302-1315. Epub 2018 Dec 10.

Biology Department, Duke University, Durham, North Carolina.

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March 2019

Are Lethal Alleles Too Abundant in Humans?

Trends Genet 2018 02 28;34(2):87-89. Epub 2017 Dec 28.

Department of Biology, Duke University, Durham, NC 27708, USA. Electronic address:

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February 2018

Reproductive interference by male on female : A laboratory experiment.

Ecol Evol 2017 Apr 6;7(7):2268-2272. Epub 2017 Mar 6.

Biology Department Duke University Durham North California.

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April 2017

Variation in Recombination Rate: Adaptive or Not?

Trends Genet 2017 05 27;33(5):364-374. Epub 2017 Mar 27.

Department of Biological Sciences, North Carolina State University, Raleigh, NC, USA. Electronic address:

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May 2017

The (R)Evolution is here!

Authors:
Mohamed A F Noor

Evolution 2017 01;71(1):4-5

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January 2017

Mistaken Identity: Another Bias in the Use of Relative Genetic Divergence Measures for Detecting Interspecies Introgression.

PLoS One 2016 19;11(10):e0165032. Epub 2016 Oct 19.

Department of Biology, Duke University, Durham, North Carolina, United States of America.

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June 2017

Gene conversion and linkage: effects on genome evolution and speciation.

Mol Ecol 2017 Jan 29;26(1):351-364. Epub 2016 Jul 29.

Department of Biology, Duke University, Box 90338, Durham, NC, 27708, USA.

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January 2017

In memoriam: Richard G. Harrison - his life and legacy.

Mol Ecol 2016 Jun;25(11):2333-6

Department of Biology, University of North Carolina, CB#3280 Coker Hall, Chapel Hill, NC, 27599, USA.

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June 2016

A Balanced Data Archiving Policy for Long-Term Studies.

Trends Ecol Evol 2016 Feb 17;31(2):84-85. Epub 2015 Dec 17.

Department of Ecology, Evolution and Behavior, University of Minnesota, Minneapolis, MN 55108, USA.

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February 2016

Temporal Stability of Molecular Diversity Measures in Natural Populations of Drosophila pseudoobscura and Drosophila persimilis.

J Hered 2015 Jul-Aug;106(4):407-11. Epub 2015 May 11.

From the Biology Department, Duke University, Durham, NC 27708.

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September 2015

How big is your Y? A genome sequence-based estimate of the size of the male-specific region in Megaselia scalaris.

G3 (Bethesda) 2014 Nov 7;5(1):45-8. Epub 2014 Nov 7.

Biology Department, Duke University, Durham, North Carolina 27708.

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November 2014

Genetics and evolution: an iOS application to supplement introductory courses in transmission and evolutionary genetics.

G3 (Bethesda) 2014 Apr 11;4(5):779-81. Epub 2014 Apr 11.

Biology Department, Duke University, Durham, North Carolina 27708

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April 2014

Recombination modulates how selection affects linked sites in Drosophila.

PLoS Biol 2012 13;10(11):e1001422. Epub 2012 Nov 13.

Biology Department, Duke University, Durham, North Carolina, United States of America.

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April 2013

Effects of premature termination codon polymorphisms in the Drosophila pseudoobscura subclade.

J Mol Evol 2012 Oct 7;75(3-4):141-50. Epub 2012 Nov 7.

Biology Department, Duke University, PO Box 90388, Durham, NC 27708, USA.

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October 2012

Zinc finger binding motifs do not explain recombination rate variation within or between species of Drosophila.

PLoS One 2012 18;7(9):e45055. Epub 2012 Sep 18.

Department of Biology, Duke University, Durham, North Carolina, USA.

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February 2013

Genomic impacts of chromosomal inversions in parapatric Drosophila species.

Philos Trans R Soc Lond B Biol Sci 2012 Feb;367(1587):422-9

Biology Department, Duke University, Box 90388, Durham, NC 27708, USA.

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February 2012

Effects of inversions on within- and between-species recombination and divergence.

Genome Biol Evol 2011 9;3:830-41. Epub 2011 Aug 9.

Biology Department, Duke University, USA.

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January 2012

Genetics of hybrid male sterility among strains and species in the Drosophila pseudoobscura species group.

Evolution 2011 Jul 19;65(7):1969-78. Epub 2011 Mar 19.

University Program in Genetics and Genomics, and Biology Department, Duke University, Durham, North Carolina 27708, USA.

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July 2011

Epistasis among Drosophila persimilis factors conferring hybrid male sterility with D. pseudoobscura bogotana.

PLoS One 2010 Oct 27;5(10):e15377. Epub 2010 Oct 27.

Biology Department, Duke University, Durham, North Carolina, United States of America.

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October 2010

Genetic and evolutionary correlates of fine-scale recombination rate variation in Drosophila persimilis.

J Mol Evol 2010 Dec 2;71(5-6):332-45. Epub 2010 Oct 2.

Department of Biology, Duke University, Durham, NC, 27708-0338, USA.

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December 2010

Genetics of incipient speciation in Drosophila mojavensis. III. Life-history divergence in allopatry and reproductive isolation.

Evolution 2010 Dec;64(12):3549-69

Program in Ecology and Evolutionary Biology, Department of Biological Sciences, University of Arkansas, Fayetteville, Arizona 72701, USA.

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December 2010

The scuttle fly.

Curr Biol 2010 Jun;20(11):R466-7

Biology Department, Box 90338, Duke University, Durham, NC 27708, USA.

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June 2010

The role of meiotic drive in hybrid male sterility.

Philos Trans R Soc Lond B Biol Sci 2010 Apr;365(1544):1265-72

Biology Department, Duke University, , Box 90338, Durham, NC 27708, USA.

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April 2010

Translocation of Y-linked genes to the dot chromosome in Drosophila pseudoobscura.

Mol Biol Evol 2010 Jul 10;27(7):1612-20. Epub 2010 Feb 10.

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York, USA.

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July 2010

Large introns in relation to alternative splicing and gene evolution: a case study of Drosophila bruno-3.

BMC Genet 2009 Oct 19;10:67. Epub 2009 Oct 19.

Biology Department, Duke University, PO Box 90338, FFSC 4244, Durham, NC 27708, USA.

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October 2009

What can you do with 0.1x genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae).

BMC Genomics 2009 Aug 18;10:382. Epub 2009 Aug 18.

Department of Biology, Duke University, Durham, NC 27708, USA.

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August 2009

Epistasis modifies the dominance of loci causing hybrid male sterility in the Drosophila pseudoobscura species group.

Evolution 2010 Jan 17;64(1):253-60. Epub 2009 Aug 17.

Department of Biology, Duke University, Durham, North Carolina 27708, USA.

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January 2010

The genomics of speciation in Drosophila: diversity, divergence, and introgression estimated using low-coverage genome sequencing.

PLoS Genet 2009 Jul 3;5(7):e1000550. Epub 2009 Jul 3.

Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA.

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July 2009

Molecular evolution of a Drosophila homolog of human BRCA2.

Genetica 2009 Nov 25;137(2):213-9. Epub 2009 Jun 25.

Biology Department, Duke University, Durham, NC 27708, USA.

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November 2009

Genetics of incipient speciation in Drosophila mojavensis: II. Host plants and mating status influence cuticular hydrocarbon QTL expression and G x E interactions.

Evolution 2009 Jul 18;63(7):1712-30. Epub 2009 Feb 18.

Program in Ecology and Evolutionary Biology, Dept. of Biological Sciences, University of Arkansas, Fayetteville, Arizona 72701, USA.

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July 2009

A reversible color polyphenism in American peppered moth (Biston betularia cognataria) caterpillars.

PLoS One 2008 Sep 4;3(9):e3142. Epub 2008 Sep 4.

Biology Department, College of William & Mary in Virginia, Williamsburg, Virginia, United States of America.

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September 2008

Connecting recombination, nucleotide diversity and species divergence in Drosophila.

Authors:
Mohamed A F Noor

Fly (Austin) 2008 Sep-Oct;2(5):255-6

Biology Department, Duke University, Durham, North Carolina 27708, USA.

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January 2011

Failure to replicate two mate preference QTLs across multiple strains of Drosophila pseudoobscura.

J Hered 2008 Nov-Dec;99(6):653-6. Epub 2008 Aug 26.

Biology Department, Duke University, Box 90338, Durham, NC 27708, USA.

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November 2008

Mutagenesis from meiotic recombination is not a primary driver of sequence divergence between Saccharomyces species.

Authors:
Mohamed A F Noor

Mol Biol Evol 2008 Nov 22;25(11):2439-44. Epub 2008 Aug 22.

Biology Department, Duke University, Durham, North Carolina, USA.

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November 2008

Gene expression disruptions of organism versus organ in Drosophila species hybrids.

PLoS One 2008 Aug 20;3(8):e3009. Epub 2008 Aug 20.

Biology Department, Duke University, Durham, North Carolina, United States of America.

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August 2008

Sequence signatures of a recent chromosomal rearrangement in Drosophila mojavensis.

Genetica 2009 May 26;136(1):5-11. Epub 2008 Jul 26.

Biology Department, Biological Sciences, Duke University, CB90338, Durham, NC 27708, USA.

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May 2009

Fine-scale mapping of recombination rate in Drosophila refines its correlation to diversity and divergence.

Proc Natl Acad Sci U S A 2008 Jul 11;105(29):10051-6. Epub 2008 Jul 11.

Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.

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July 2008

PERMANENT GENETIC RESOURCES: Polymorphic microsatellite loci for Diachasma alloeum (Hymenoptera: Braconidae).

Mol Ecol Resour 2008 Mar;8(2):373-6

Department of Biological Sciences, 107 Galvin Life Science Building, University of Notre Dame, Notre Dame, IN 46556, USA, Biology Department, Duke University, Research Drive, LSRC B333, Box 90338, Durham, NC 27708, USA.

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March 2008

Evolution of genes and genomes on the Drosophila phylogeny.

Authors:
Andrew G Clark Michael B Eisen Douglas R Smith Casey M Bergman Brian Oliver Therese A Markow Thomas C Kaufman Manolis Kellis William Gelbart Venky N Iyer Daniel A Pollard Timothy B Sackton Amanda M Larracuente Nadia D Singh Jose P Abad Dawn N Abt Boris Adryan Montserrat Aguade Hiroshi Akashi Wyatt W Anderson Charles F Aquadro David H Ardell Roman Arguello Carlo G Artieri Daniel A Barbash Daniel Barker Paolo Barsanti Phil Batterham Serafim Batzoglou Dave Begun Arjun Bhutkar Enrico Blanco Stephanie A Bosak Robert K Bradley Adrianne D Brand Michael R Brent Angela N Brooks Randall H Brown Roger K Butlin Corrado Caggese Brian R Calvi A Bernardo de Carvalho Anat Caspi Sergio Castrezana Susan E Celniker Jean L Chang Charles Chapple Sourav Chatterji Asif Chinwalla Alberto Civetta Sandra W Clifton Josep M Comeron James C Costello Jerry A Coyne Jennifer Daub Robert G David Arthur L Delcher Kim Delehaunty Chuong B Do Heather Ebling Kevin Edwards Thomas Eickbush Jay D Evans Alan Filipski Sven Findeiss Eva Freyhult Lucinda Fulton Robert Fulton Ana C L Garcia Anastasia Gardiner David A Garfield Barry E Garvin Greg Gibson Don Gilbert Sante Gnerre Jennifer Godfrey Robert Good Valer Gotea Brenton Gravely Anthony J Greenberg Sam Griffiths-Jones Samuel Gross Roderic Guigo Erik A Gustafson Wilfried Haerty Matthew W Hahn Daniel L Halligan Aaron L Halpern Gillian M Halter Mira V Han Andreas Heger LaDeana Hillier Angie S Hinrichs Ian Holmes Roger A Hoskins Melissa J Hubisz Dan Hultmark Melanie A Huntley David B Jaffe Santosh Jagadeeshan William R Jeck Justin Johnson Corbin D Jones William C Jordan Gary H Karpen Eiko Kataoka Peter D Keightley Pouya Kheradpour Ewen F Kirkness Leonardo B Koerich Karsten Kristiansen Dave Kudrna Rob J Kulathinal Sudhir Kumar Roberta Kwok Eric Lander Charles H Langley Richard Lapoint Brian P Lazzaro So-Jeong Lee Lisa Levesque Ruiqiang Li Chiao-Feng Lin Michael F Lin Kerstin Lindblad-Toh Ana Llopart Manyuan Long Lloyd Low Elena Lozovsky Jian Lu Meizhong Luo Carlos A Machado Wojciech Makalowski Mar Marzo Muneo Matsuda Luciano Matzkin Bryant McAllister Carolyn S McBride Brendan McKernan Kevin McKernan Maria Mendez-Lago Patrick Minx Michael U Mollenhauer Kristi Montooth Stephen M Mount Xu Mu Eugene Myers Barbara Negre Stuart Newfeld Rasmus Nielsen Mohamed A F Noor Patrick O'Grady Lior Pachter Montserrat Papaceit Matthew J Parisi Michael Parisi Leopold Parts Jakob S Pedersen Graziano Pesole Adam M Phillippy Chris P Ponting Mihai Pop Damiano Porcelli Jeffrey R Powell Sonja Prohaska Kim Pruitt Marta Puig Hadi Quesneville Kristipati Ravi Ram David Rand Matthew D Rasmussen Laura K Reed Robert Reenan Amy Reily Karin A Remington Tania T Rieger Michael G Ritchie Charles Robin Yu-Hui Rogers Claudia Rohde Julio Rozas Marc J Rubenfield Alfredo Ruiz Susan Russo Steven L Salzberg Alejandro Sanchez-Gracia David J Saranga Hajime Sato Stephen W Schaeffer Michael C Schatz Todd Schlenke Russell Schwartz Carmen Segarra Rama S Singh Laura Sirot Marina Sirota Nicholas B Sisneros Chris D Smith Temple F Smith John Spieth Deborah E Stage Alexander Stark Wolfgang Stephan Robert L Strausberg Sebastian Strempel David Sturgill Granger Sutton Granger G Sutton Wei Tao Sarah Teichmann Yoshiko N Tobari Yoshihiko Tomimura Jason M Tsolas Vera L S Valente Eli Venter J Craig Venter Saverio Vicario Filipe G Vieira Albert J Vilella Alfredo Villasante Brian Walenz Jun Wang Marvin Wasserman Thomas Watts Derek Wilson Richard K Wilson Rod A Wing Mariana F Wolfner Alex Wong Gane Ka-Shu Wong Chung-I Wu Gabriel Wu Daisuke Yamamoto Hsiao-Pei Yang Shiaw-Pyng Yang James A Yorke Kiyohito Yoshida Evgeny Zdobnov Peili Zhang Yu Zhang Aleksey V Zimin Jennifer Baldwin Amr Abdouelleil Jamal Abdulkadir Adal Abebe Brikti Abera Justin Abreu St Christophe Acer Lynne Aftuck Allen Alexander Peter An Erica Anderson Scott Anderson Harindra Arachi Marc Azer Pasang Bachantsang Andrew Barry Tashi Bayul Aaron Berlin Daniel Bessette Toby Bloom Jason Blye Leonid Boguslavskiy Claude 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Annie Lui Pen MacDonald Vasilia Magnisalis Kebede Maru Charles Matthews William McCusker Susan McDonough Teena Mehta James Meldrim Louis Meneus Oana Mihai Atanas Mihalev Tanya Mihova Rachel Mittelman Valentine Mlenga Anna Montmayeur Leonidas Mulrain Adam Navidi Jerome Naylor Tamrat Negash Thu Nguyen Nga Nguyen Robert Nicol Choe Norbu Nyima Norbu Nathaniel Novod Barry O'Neill Sahal Osman Eva Markiewicz Otero L Oyono Christopher Patti Pema Phunkhang Fritz Pierre Margaret Priest Sujaa Raghuraman Filip Rege Rebecca Reyes Cecil Rise Peter Rogov Keenan Ross Elizabeth Ryan Sampath Settipalli Terry Shea Ngawang Sherpa Lu Shi Diana Shih Todd Sparrow Jessica Spaulding John Stalker Nicole Stange-Thomann Sharon Stavropoulos Catherine Stone Christopher Strader Senait Tesfaye Talene Thomson Yama Thoulutsang Dawa Thoulutsang Kerri Topham Ira Topping Tsamla Tsamla Helen Vassiliev Andy Vo Tsering Wangchuk Tsering Wangdi Michael Weiand Jane Wilkinson Adam Wilson Shailendra Yadav Geneva Young Qing Yu Lisa Zembek Danni Zhong Andrew Zimmer Zac Zwirko David B Jaffe Pablo Alvarez Will Brockman Jonathan Butler CheeWhye Chin Sante Gnerre Manfred Grabherr Michael Kleber Evan Mauceli Iain MacCallum

Nature 2007 Nov;450(7167):203-18

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

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November 2007

Genetics of incipient speciation in Drosophila mojavensis. I. Male courtship song, mating success, and genotype x environment interactions.

Evolution 2007 May;61(5):1106-19

Program in Ecology and Evolutionary Biology, Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 72701, USA.

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May 2007

Localization and characterization of X chromosome inversion breakpoints separating Drosophila mojavensis and Drosophila arizonae.

J Hered 2007 Mar-Apr;98(2):111-4. Epub 2006 Dec 28.

University Program in Genetics and Genomics, Duke University, Durham, NC 27708, USA.

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June 2007

Evaluation of the genomic extent of effects of fixed inversion differences on intraspecific variation and interspecific gene flow in Drosophila pseudoobscura and D. persimilis.

Genetics 2007 Mar 18;175(3):1289-306. Epub 2006 Dec 18.

Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721, USA.

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March 2007

Multilocus test for introgression between the cactophilic species Drosophila mojavensis and Drosophila arizonae.

Am Nat 2006 Nov 29;168(5):682-96. Epub 2006 Sep 29.

Levine Science Research Center, Developmental, Cell, and Molecular Biology Group, Box 91000, Duke University, Durham, North Carolina 27708, USA.

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November 2006

Evolutionary genetics: jumping into a new species.

Curr Biol 2006 Oct;16(20):R890-2

Duke University, Department of Biology, DCMB Group, Box 91000, Durham, North Carolina 27708, USA.

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October 2006

Gene expression divergence and the origin of hybrid dysfunctions.

Genetica 2007 Jan 17;129(1):71-81. Epub 2006 Oct 17.

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.

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January 2007

Speciation genetics: evolving approaches.

Nat Rev Genet 2006 Nov 3;7(11):851-61. Epub 2006 Oct 3.

DCMB Group/Biology Department, Duke University, BOX 91000, Durham, North Carolina 27708, USA.

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November 2006

Gene transposition as a cause of hybrid sterility in Drosophila.

Science 2006 Sep;313(5792):1448-50

Department of Biology, University of Rochester, Rochester, NY 14627, USA.

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September 2006

No evidence for learned mating discrimination in male Drosophila pseudoobscura.

BMC Evol Biol 2006 Jul 6;6:54. Epub 2006 Jul 6.

DCMB Group, Department of Biology, Box 91000, Duke University, Durham, NC 27708, USA.

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July 2006

A recombinational portrait of the Drosophila pseudoobscura genome.

Genet Res 2006 Feb;87(1):23-31

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.

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February 2006

Evidence for a one-allele assortative mating locus.

Science 2005 Dec;310(5753):1467

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.

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December 2005

A kingpin of academic inclusive fitness: the history and contributions of Bruce Grant.

Genetics 2005 Nov;171(3):867-71

DCMB Group/Biology, Duke University, Durham, North Carolina 27708, USA.

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November 2005

Patterns of evolution of genes disrupted in expression in Drosophila species hybrids.

Authors:
Mohamed A F Noor

Genet Res 2005 Apr;85(2):119-25

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.

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April 2005

Likelihoods from summary statistics: recent divergence between species.

Genetics 2005 Nov 2;171(3):1419-36. Epub 2005 Sep 2.

Institute of Statistics and Decision Sciences, Duke University, Durham, North Carolina 27708, USA.

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November 2005

Variation in recombination rate may bias human genetic disease mapping studies.

Genetica 2004 Nov;122(3):245-52

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.

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November 2004

The genetics of speciation by reinforcement.

PLoS Biol 2004 Dec 23;2(12):e416. Epub 2004 Nov 23.

Department of Biological Sciences, Louisiana State University, Baton Rouge, USA.

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December 2004

A test of the chromosomal rearrangement model of speciation in Drosophila pseudoobscura.

Evolution 2004 Aug;58(8):1856-60

Department of Biological Sciences, Louisiana State University, Life Sciences Bldg, Baton Rouge, Louisiana 70803, USA.

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August 2004

A microsatellite linkage map of Drosophila mojavensis.

BMC Genet 2004 May 26;5:12. Epub 2004 May 26.

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.

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May 2004

Using comparative genomic data to test for fast-X evolution.

Evolution 2004 Mar;58(3):656-60

Department of Biological Sciences, Louisiana State University, Life Sciences Building, Baton Rouge, Louisiana 70803, USA.

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March 2004

Characterization of a male-predominant antisense transcript underexpressed in hybrids of Drosophila pseudoobscura and D. persimilis.

Genetics 2003 Dec;165(4):1823-30

Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana 70803, USA.

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December 2003

Genome-wide patterns of expression in Drosophila pure species and hybrid males.

Mol Biol Evol 2003 Jul 30;20(7):1070-6. Epub 2003 May 30.

Department of Biological Sciences, Louisiana State University, USA.

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July 2003

Variability on the dot chromosome in the Drosophila simulans clade.

Genetica 2003 May;118(1):51-8

Department of Biological Sciences, Life Sciences Bldg., Louisiana State University, Baton Rouge, LA 70803, USA.

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May 2003

The evolution of conspecific sperm precedence in Drosophila.

Mol Ecol 2003 May;12(5):1179-84

Department of Biological Sciences, Life Sciences Building, Louisiana State University, Baton Rouge, LA 70803, USA.

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May 2003

Recombination and the divergence of hybridizing species.

Genetica 2002 Nov;116(2-3):167-78

Department of Biological Sciences, 107 Life Sciences Building, Louisiana State University, Baton Rouge, LA 70803, USA.

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November 2002

Little qualitative RNA misexpression in sterile male F1 hybrids of Drosophila pseudoobscura and D. persimilis.

BMC Evol Biol 2002 Sep 10;2:16. Epub 2002 Sep 10.

Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.

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September 2002

GENETICS OF SEXUAL ISOLATION AND COURTSHIP DYSFUNCTION IN MALE HYBRIDS OF DROSOPHILA PSEUDOOBSCURA AND DROSOPHILA PERSIMILIS.

Authors:
Mohamed A F Noor

Evolution 1997 Jun;51(3):809-815

Department of Ecology and Evolution, The University of Chicago, 1101 East 57th Street, Chicago, Illinois, 60637.

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June 1997