Publications by authors named "Mitali Mukerji"

59Publications

VitiVar: A locus specific database of vitiligo associated genes and variations.

Gene X 2019 Sep 11;3:100018. Epub 2019 May 11.

CSIR's Ayurgenomics Unit - TRISUTRA (Translational Research and Innovative Science ThRough Ayurgenomics), CSIR-IGIB, Mathura Road, Delhi, India.

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http://dx.doi.org/10.1016/j.gene.2019.100018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7286000PMC
September 2019

Whole exome and targeted gene sequencing to detect pathogenic recessive variants in early onset cerebellar ataxia.

Clin Genet 2019 12 1;96(6):566-574. Epub 2019 Sep 1.

Genomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology (CSIR-IGIB), Delhi, India.

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http://dx.doi.org/10.1111/cge.13625DOI Listing
December 2019

Generation of three spinocerebellar ataxia type-12 patients derived induced pluripotent stem cell lines (IGIBi002-A, IGIBi003-A and IGIBi004-A).

Stem Cell Res 2018 08 14;31:216-221. Epub 2018 Aug 14.

Genomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology (CSIR -IGIB), Mall Road, Delhi 110007, India. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S18735061183020
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http://dx.doi.org/10.1016/j.scr.2018.08.008DOI Listing
August 2018

Paradigm for disease deconvolution in rare neurodegenerative disorders in Indian population: insights from studies in cerebellar ataxias.

J Genet 2018 Jul;97(3):589-609

CSIR Institute of Genomics and Integrative Biology (CSIR-IGIB), Mathura Road, New Delhi 110 025, India. E-mail:

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July 2018

Western Indian Rural Gut Microbial Diversity in Extreme Endo-Phenotypes Reveals Signature Microbes.

Front Microbiol 2018 13;9:118. Epub 2018 Feb 13.

CSIR Ayurgenomics Unit - TRISUTRA (Translational Research and Innovative Science ThRough Ayurgenomics), CSIR-Institute of Genomics and Integrative Biology, New Delhi, India.

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http://dx.doi.org/10.3389/fmicb.2018.00118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5816807PMC
February 2018

Ancestral Variations of the PCDHG Gene Cluster Predispose to Dyslexia in a Multiplex Family.

EBioMedicine 2018 Feb 9;28:168-179. Epub 2018 Jan 9.

Cellular and Molecular Neuroscience Division, National Brain Research Centre, Manesar, Gurgaon, Haryana 122051, India; Department of Biochemistry, All India Institute of Medical Sciences, New Delhi 110029, India. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S23523964173051
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http://dx.doi.org/10.1016/j.ebiom.2017.12.031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5835549PMC
February 2018

Targeted exome sequencing in anti-factor H antibody negative HUS reveals multiple variations.

Clin Exp Nephrol 2018 Jun 22;22(3):653-660. Epub 2017 Sep 22.

Division of Nephrology, Department of Pediatrics, All India Institute of Medical Sciences, New Delhi, 110029, India.

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http://dx.doi.org/10.1007/s10157-017-1478-6DOI Listing
June 2018

A Complete Association of an intronic SNP rs6798742 with Origin of Spinocerebellar Ataxia Type 7-CAG Expansion Loci in the Indian and Mexican Population.

Ann Hum Genet 2017 Sep 9;81(5):197-204. Epub 2017 Jun 9.

Genomics and Molecular Medicine, Council of Scientific and Industrial Research-Institute of Genomics and Integrative Biology (CSIR -IGIB), Mall Road, Delhi, India.

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http://dx.doi.org/10.1111/ahg.12200DOI Listing
September 2017

Alu-miRNA interactions modulate transcript isoform diversity in stress response and reveal signatures of positive selection.

Sci Rep 2016 09 2;6:32348. Epub 2016 Sep 2.

CSIR Ayurgenomics Unit - TRISUTRA, CSIR- Institute of Genomics and Integrative Biology (IGIB), Sukhdev Vihar, Mathura Road, New Delhi-110025, INDIA.

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http://www.nature.com/articles/srep32348
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http://dx.doi.org/10.1038/srep32348DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009348PMC
September 2016

Human satellite-III non-coding RNAs modulate heat-shock-induced transcriptional repression.

J Cell Sci 2016 10 15;129(19):3541-3552. Epub 2016 Aug 15.

Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India

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http://dx.doi.org/10.1242/jcs.189803DOI Listing
October 2016

Ayurgenomics for stratified medicine: TRISUTRA consortium initiative across ethnically and geographically diverse Indian populations.

J Ethnopharmacol 2017 Feb 22;197:274-293. Epub 2016 Jul 22.

CSIR Ayurgenomics Unit- TRISUTRA, CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi 110020, India; Genomics and Molecular Medicine & CSIR-Institute of Genomics and Integrative Biology, Mathura Road, New Delhi 110020, India; Academy of Scientific & Innovative research, CSIR-IGIB, Delhi, India. Electronic address:

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http://dx.doi.org/10.1016/j.jep.2016.07.063DOI Listing
February 2017

Genomic insights into ayurvedic and western approaches to personalized medicine.

J Genet 2016 Mar;95(1):209-28

CSIR Ayurgenomics Unit-TRISUTRA, and Genomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology, New Delhi 110 020,

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http://dx.doi.org/10.1007/s12041-015-0607-9DOI Listing
March 2016

Investigation of mitochondrial DNA variations among Indian Friedreich's ataxia (FRDA) patients.

Mitochondrion 2015 Nov 29;25:1-5. Epub 2015 Aug 29.

Department of Neurology, Neuroscience Centre, All India Institute of Medical Sciences, Ansari Nagar, New Delhi 110029, India. Electronic address:

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http://dx.doi.org/10.1016/j.mito.2015.08.003DOI Listing
November 2015

Spinocerebellar ataxia 7 (SCA7) in Indian population: predilection of ATXN7-CAG expansion mutation in an ethnic population.

Indian J Med Res 2015 Feb;141(2):187-98

Department of Neurology, Neurosciences Centre, All India Institute of Medical Sciences (AIIMS), New Delhi, India.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4418155PMC
http://dx.doi.org/10.4103/0971-5916.155556DOI Listing
February 2015

Population diversity and adaptive evolution in keratinization genes: impact of environment in shaping skin phenotypes.

Mol Biol Evol 2015 Mar 21;32(3):555-73. Epub 2014 Dec 21.

Academy of Scientific and Innovative Research, Delhi, India Systems Biology Group, Council for Scientific and Industrial Research-Institute of Genomics and Integrative Biology, Delhi, India

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http://dx.doi.org/10.1093/molbev/msu342DOI Listing
March 2015

Extensive copy number variations in admixed Indian population of African ancestry: potential involvement in adaptation.

Genome Biol Evol 2014 Nov 13;6(12):3171-81. Epub 2014 Nov 13.

G.N. Ramachandran Knowledge Centre for Genome Informatics, Council of Scientific and Industrial Research, Institute of Genomics and Integrative Biology, New Delhi, India Genomics and Molecular Medicine, Council of Scientific and Industrial Research, Institute of Genomics and Integrative Biology, New Delhi, India

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http://dx.doi.org/10.1093/gbe/evu250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4986450PMC
November 2014

Infantile onset spinocerebellar ataxia 2 (SCA2): a clinical report with review of previous cases.

J Child Neurol 2014 Jan 2;29(1):139-44. Epub 2013 Dec 2.

1Pediatric Research and Genetic Lab, MAMC Associated Lok Nayak Hospital, New Delhi, India.

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http://dx.doi.org/10.1177/0883073813509015DOI Listing
January 2014

Transcriptome-wide expansion of non-coding regulatory switches: evidence from co-occurrence of Alu exonization, antisense and editing.

Nucleic Acids Res 2013 Feb 8;41(4):2121-37. Epub 2013 Jan 8.

GN Ramachandran Knowledge Centre for Genome Informatics, CSIR-Institute of Genomics and Integrative Biology, Mall Road, Delhi-110007, India.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gks1457DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3575813PMC
February 2013

SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure.

BMC Genomics 2012 Aug 25;13:426. Epub 2012 Aug 25.

National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110012, India.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-13-426DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3562522PMC
August 2012

Hypoxia response in asthma: differential modulation on inflammation and epithelial injury.

Am J Respir Cell Mol Biol 2012 Jul 3;47(1):1-10. Epub 2012 Feb 3.

Centre for Excellence in Asthma & Lung disease, CSIR-Institute of Genomics and Integrative Biology, Delhi, India.

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http://dx.doi.org/10.1165/rcmb.2011-0203OCDOI Listing
July 2012

Heat shock factor binding in Alu repeats expands its involvement in stress through an antisense mechanism.

Genome Biol 2011 Nov 23;12(11):R117. Epub 2011 Nov 23.

Genomics and Molecular Medicine, Institute of Genomics and Integrative Biology, Council of Scientific and Industrial Research (CSIR-IGIB), Delhi- India.

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http://dx.doi.org/10.1186/gb-2011-12-11-r117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334603PMC
November 2011

From 'JUNK' to just unexplored noncoding knowledge: the case of transcribed Alus.

Brief Funct Genomics 2011 Sep;10(5):294-311

Genomics and Molecular medicine, Institute of Genomics and Integrative Biology (CSIR-IGIB), Council of Scientific and Industrial Research (CSIR). Mall Road, Delhi, India.

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http://dx.doi.org/10.1093/bfgp/elr029DOI Listing
September 2011

Ayurgenomics: a new way of threading molecular variability for stratified medicine.

ACS Chem Biol 2011 Sep;6(9):875-80

Genomics and Molecular Medicine, CSIR-Institute of Genomics and Integrative Biology, New Delhi, India.

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http://dx.doi.org/10.1021/cb2003016DOI Listing
September 2011

Spectrum of large copy number variations in 26 diverse Indian populations: potential involvement in phenotypic diversity.

Hum Genet 2012 Jan 9;131(1):131-43. Epub 2011 Jul 9.

Genomics and Molecular Medicine, Institute of Genomics and Integrative Biology, Delhi 110007, India.

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http://dx.doi.org/10.1007/s00439-011-1050-5DOI Listing
January 2012

Recent admixture in an Indian population of African ancestry.

Am J Hum Genet 2011 Jul 7;89(1):111-20. Epub 2011 Jul 7.

G.N. Ramachandran Knowledge Centre for Genome Informatics, Council of Scientific and Industrial Research, Institute of Genomics and Integrative Biology, Delhi, India.

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http://dx.doi.org/10.1016/j.ajhg.2011.06.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3135806PMC
July 2011

Differential serum cytokine levels are associated with cytokine gene polymorphisms in north Indians with active pulmonary tuberculosis.

Infect Genet Evol 2011 Jul 1;11(5):1015-22. Epub 2011 Apr 1.

Department of Microbiology, Vallabhbhai Patel Chest Institute, University of Delhi, Delhi 110007, India.

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http://dx.doi.org/10.1016/j.meegid.2011.03.017DOI Listing
July 2011

EGLN1 involvement in high-altitude adaptation revealed through genetic analysis of extreme constitution types defined in Ayurveda.

Proc Natl Acad Sci U S A 2010 Nov 18;107(44):18961-6. Epub 2010 Oct 18.

Genomics and Molecular Medicine, Institute of Genomics and Integrative Biology, Council of Scientific and Industrial Research, New Delhi 110007, India.

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http://dx.doi.org/10.1073/pnas.1006108107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2973881PMC
November 2010

IGVBrowser--a genomic variation resource from diverse Indian populations.

Database (Oxford) 2010 Sep 15;2010:baq022. Epub 2010 Sep 15.

GN Ramachandran Knowledge Centre for Genome Informatics, Institute of Genomics and Integrative Biology, Council for Scientific and Industrial Research, Mall Road, Delhi-110007, India.

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http://dx.doi.org/10.1093/database/baq022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2942067PMC
September 2010

Mapping human genetic diversity in Asia.

Science 2009 Dec;326(5959):1541-5

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http://dx.doi.org/10.1126/science.1177074DOI Listing
December 2009

Utilizing linkage disequilibrium information from Indian Genome Variation Database for mapping mutations: SCA12 case study.

J Genet 2009 Apr;88(1):55-60

Functional Genomics Unit, Institute of Genomics and Integrative Biology (CSIR), Mall Road, New Delhi, 110 007, India.

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http://dx.doi.org/10.1007/s12041-009-0007-0DOI Listing
April 2009

SCA-LSVD: a repeat-oriented locus-specific variation database for genotype to phenotype correlations in spinocerebellar ataxias.

Hum Mutat 2009 Jul;30(7):1037-42

Genomics and Molecular Medicine, Institute of Genomics and Integrative Biology-Council of Scientific and Industrial Research (IGIB-CSIR), Delhi, India.

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http://dx.doi.org/10.1002/humu.21006DOI Listing
July 2009

Finding Alu in primate genomes with AF-1.

Bioinformation 2009 26;3(7):287-8. Epub 2009 Feb 26.

Department of Bioinformatics & Structural Biology, School of Life Sciences & Biotechnology, Indian Institute of Advanced Research, Gandhinagar, Gujarat, India.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2652563PMC
http://dx.doi.org/10.6026/97320630003287DOI Listing
June 2010

From diversity to delivery: the case of the Indian Genome Variation initiative.

Nat Rev Genet 2008 10;9 Suppl 1:S9-14

McLaughlin-Rotman Centre for Global Health, Program on Life Sciences, Ethics and Policy, University Health Network and University of Toronto, MaRS Centre, South Tower, Suite 406, 101 College Street, Toronto, Ontario M5G 1L7, Canada.

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http://dx.doi.org/10.1038/nrg2440DOI Listing
October 2008

SCA 1, SCA 2 & SCA 3/MJD mutations in ataxia syndromes in southern India.

Indian J Med Res 2007 Nov;126(5):465-70

Department of Psychiatry, National Institute of Mental Health & Neuro Sciences, Bangalore, India.

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November 2007

Non-random genomic divergence in repetitive sequences of human and chimpanzee in genes of different functional categories.

Mol Genet Genomics 2007 Apr 9;277(4):441-55. Epub 2007 Mar 9.

Functional Genomics Unit, Institute of Genomics and Integrative Biology, CSIR, Mall Road, Delhi, 110007, India.

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http://dx.doi.org/10.1007/s00438-007-0210-8DOI Listing
April 2007

Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation.

Genome Res 2006 May;16(5):644-55

G.N. Ramachandran Knowledge Centre for Genome Informatics, Institute of Genomics and Integrative Biology, CSIR, Delhi, India.

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http://dx.doi.org/10.1101/gr.4508806DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1457047PMC
May 2006

ALU-ring elements in the primate genomes.

Genetica 2005 Jul;124(2-3):273-89

Functional Genomics Unit, Institute of Genomics and Integrative Biology, Mall Road, Delhi, India.

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http://dx.doi.org/10.1007/s10709-005-3086-8DOI Listing
July 2005

Insights into the mutational history and prevalence of SCA1 in the Indian population through anchored polymorphisms.

Hum Genet 2005 Oct 28;118(1):107-14. Epub 2005 Oct 28.

Functional Genomics Unit, Institute of Genomics and Integrative Biology, CSIR, Mall Road, Delhi, 110007, India.

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http://dx.doi.org/10.1007/s00439-005-0018-8DOI Listing
October 2005

MLC1 gene is associated with schizophrenia and bipolar disorder in Southern India.

Biol Psychiatry 2005 Jul;58(1):16-22

Functional Genomics Unit, Institute of Genomics and Integrative Biology (CSIR), Delhi, India.

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http://dx.doi.org/10.1016/j.biopsych.2005.03.027DOI Listing
July 2005

Founder haplotype for Machado-Joseph disease in the Indian population: novel insights from history and polymorphism studies.

Arch Neurol 2005 Apr;62(4):637-40

Functional Genomics Unit, Institute of Genomics and Integrative Biology, New Delhi, India.

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http://dx.doi.org/10.1001/archneur.62.4.637DOI Listing
April 2005

Post-zygotic de novo trinucleotide repeat expansion at spinocerebellar ataxia type 7 locus: evidence from an Indian family.

J Hum Genet 2005 5;50(3):155-157. Epub 2005 Mar 5.

Functional Genomics Unit, Institute of Genomics and Integrative Biology, CSIR, Mall Road, Delhi, 110007, India.

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http://dx.doi.org/10.1007/s10038-005-0233-0DOI Listing
May 2005

Evolution and distribution of RNA polymerase II regulatory sites from RNA polymerase III dependant mobile Alu elements.

BMC Evol Biol 2004 Oct 4;4:37. Epub 2004 Oct 4.

Functional Genomics Unit, Institute of Genomics and Integrative Biology, CSIR, Mall Road, Delhi 110007, India.

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http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2148-4-37DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC524483PMC
October 2004

SMARCA2 and THAP11: potential candidates for polyglutamine disorders as evidenced from polymorphism and protein-folding simulation studies.

J Hum Genet 2004 10;49(11):596-602. Epub 2004 Sep 10.

Functional Genomics Unit, Institute of Genomics and Integrative Biology, CSIR, Delhi University Campus, Mall Road, New Delhi, 110007, India.

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http://dx.doi.org/10.1007/s10038-004-0194-8DOI Listing
April 2005

Alu repeat analysis in the complete human genome: trends and variations with respect to genomic composition.

Bioinformatics 2004 Apr 29;20(6):813-7. Epub 2004 Jan 29.

Functional Genomics Unit, Institute of Genomics and Integrative Biology (IGIB), CSIR, Mall Road, Delhi 110007, India.

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http://dx.doi.org/10.1093/bioinformatics/bth005DOI Listing
April 2004

Complex phenotypes in an Indian family with homozygous SCA2 mutations.

Ann Neurol 2004 Jan;55(1):130-3

Department of Neurology, National Institute of Mental Health and Neurosciences, Bangalore, India.

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http://dx.doi.org/10.1002/ana.10815DOI Listing
January 2004

Nonrandom distribution of alu elements in genes of various functional categories: insight from analysis of human chromosomes 21 and 22.

Mol Biol Evol 2003 Sep 27;20(9):1420-4. Epub 2003 Jun 27.

Functional Genomics Unit, Institute of Genomics and Integrative Biology (formerly Centre for Biochemical Technology), CSIR, Delhi, India.

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http://dx.doi.org/10.1093/molbev/msg153DOI Listing
September 2003

Origin and instability of GAA repeats: insights from Alu elements.

J Biomol Struct Dyn 2002 Oct;20(2):253-63

Functional Genomics Unit, Centre for Biochemical Technology (CSIR), Delhi University Campus, Mall Road, Delhi-110007, India.

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http://dx.doi.org/10.1080/07391102.2002.10506841DOI Listing
October 2002