Misha Kapushesky

Misha Kapushesky

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Misha Kapushesky

Misha Kapushesky

Publications by authors named "Misha Kapushesky"

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Mitochondrial Complex I Is a Global Regulator of Secondary Metabolism, Virulence and Azole Sensitivity in Fungi.

PLoS One 2016 20;11(7):e0158724. Epub 2016 Jul 20.

Manchester Fungal Infection Group, Institute of Inflammation and Repair, Faculty of Medicine and Human Sciences, University of Manchester, 2.24 Core technology Building, Grafton St., Manchester, M13 9NT, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0158724PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4954691PMC
July 2017

Reversion of a fungal genetic code alteration links proteome instability with genomic and phenotypic diversification.

Proc Natl Acad Sci U S A 2013 Jul 17;110(27):11079-84. Epub 2013 Jun 17.

RNA Biology Laboratory, Department of Biology and Centre for Environmental and Marine Studies, University of Aveiro, 3810-193 Aveiro, Portugal.

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http://dx.doi.org/10.1073/pnas.1302094110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3704024PMC
July 2013

ontoCAT: an R package for ontology traversal and search.

Bioinformatics 2011 Sep 22;27(17):2468-70. Epub 2011 Jun 22.

EMBL Outstation-Hinxton, European Bioinformatics Institute, Cambridge, UK.

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http://dx.doi.org/10.1093/bioinformatics/btr375DOI Listing
September 2011

A pipeline for RNA-seq data processing and quality assessment.

Bioinformatics 2011 Mar 13;27(6):867-9. Epub 2011 Jan 13.

EMBL Outstation-Hinxton, European Bioinformatics Institute, Cambridge, UK.

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http://dx.doi.org/10.1093/bioinformatics/btr012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051320PMC
March 2011

Modeling sample variables with an Experimental Factor Ontology.

Bioinformatics 2010 Apr 3;26(8):1112-8. Epub 2010 Mar 3.

Microarray Informatics Team, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.

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http://dx.doi.org/10.1093/bioinformatics/btq099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2853691PMC
April 2010

Gene expression atlas at the European bioinformatics institute.

Nucleic Acids Res 2010 Jan 11;38(Database issue):D690-8. Epub 2009 Nov 11.

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.

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http://dx.doi.org/10.1093/nar/gkp936DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808905PMC
January 2010

Importing ArrayExpress datasets into R/Bioconductor.

Bioinformatics 2009 Aug 8;25(16):2092-4. Epub 2009 Jun 8.

EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btp354DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723004PMC
August 2009

Data storage and analysis in ArrayExpress and Expression Profiler.

Curr Protoc Bioinformatics 2008 Sep;Chapter 7:Unit 7.13

European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.

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http://dx.doi.org/10.1002/0471250953.bi0713s23DOI Listing
September 2008

4DXpress: a database for cross-species expression pattern comparisons.

Nucleic Acids Res 2008 Jan 4;36(Database issue):D847-53. Epub 2007 Oct 4.

European Molecular Biology Laboratory EMBL, Meyerhofstrasse 1, 69117 Heidelberg, Germany.

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http://dx.doi.org/10.1093/nar/gkm797DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238840PMC
January 2008

Data storage and analysis in ArrayExpress.

Methods Enzymol 2006 ;411:370-86

European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK.

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http://dx.doi.org/10.1016/S0076-6879(06)11020-4DOI Listing
December 2006

ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression.

Bioinformatics 2006 Mar 23;22(6):765-7. Epub 2005 Dec 23.

EMBL Meyerhofstr 1 D-69117 Heidelberg, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btk022DOI Listing
March 2006

A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings.

Bioinformatics 2005 Nov 1;21(21):3993-9. Epub 2005 Sep 1.

EMBL Outstation-Hinxton, European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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http://bioinformatics.oxfordjournals.org/content/early/2005/
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http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bio
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http://dx.doi.org/10.1093/bioinformatics/bti644DOI Listing
November 2005

Unraveling nature's networks.

Genome Biol 2003 16;4(10):341. Epub 2003 Sep 16.

EBI-EMBL, Microarray Informatics Group, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1186/gb-2003-4-10-341DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC328448PMC
August 2004

ArrayExpress: a public database of gene expression data at EBI.

C R Biol 2003 Oct-Nov;326(10-11):1075-8

EMBL Outstation-Hinxton, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom.

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http://dx.doi.org/10.1016/j.crvi.2003.09.026DOI Listing
May 2004