Mireia Coscolla

Mireia Coscolla

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Mireia Coscolla

Mireia Coscolla

Publications by authors named "Mireia Coscolla"

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Tuberculosis outbreak investigation using phylodynamic analysis.

Epidemics 2018 12 22;25:47-53. Epub 2018 May 22.

Department of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland; Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.

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https://linkinghub.elsevier.com/retrieve/pii/S17554365173010
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http://dx.doi.org/10.1016/j.epidem.2018.05.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6227250PMC
December 2018

Biological and Epidemiological Consequences of MTBC Diversity.

Authors:
Mireia Coscolla

Adv Exp Med Biol 2017 ;1019:95-116

Swiss Tropical and Public Health Institute, University of Basel, Socinstrasse 57, 4002, Basel, Switzerland.

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http://dx.doi.org/10.1007/978-3-319-64371-7_5DOI Listing
March 2018

Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages.

Nat Genet 2016 12 31;48(12):1535-1543. Epub 2016 Oct 31.

Swiss Tropical and Public Health Institute, Basel, Switzerland.

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http://jcm.asm.org/content/47/4/1119.full.pdf
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http://jcm.asm.org/content/early/2009/02/11/JCM.02142-08.ful
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http://dx.doi.org/10.1038/ng.3704DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5238942PMC
December 2016

Within Host Evolution Selects for a Dominant Genotype of Mycobacterium tuberculosis while T Cells Increase Pathogen Genetic Diversity.

PLoS Pathog 2016 Dec 14;12(12):e1006111. Epub 2016 Dec 14.

Division of Infectious Diseases, Department of Medicine, New York University School of Medicine, New York, NY, United States of America.

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https://dx.plos.org/10.1371/journal.ppat.1006111
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http://dx.doi.org/10.1371/journal.ppat.1006111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5189959PMC
December 2016

Geographical and Temporal Structures of Legionella pneumophila Sequence Types in Comunitat Valenciana (Spain), 1998 to 2013.

Appl Environ Microbiol 2015 Oct 31;81(20):7106-13. Epub 2015 Jul 31.

Joint Research Unit Infección y Salud, FISABIO-Universidad de Valencia, Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Valencia, Spain CIBER en Epidemiología y Salud Pública, Valencia, Spain

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http://aem.asm.org/lookup/doi/10.1128/AEM.02196-15
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http://dx.doi.org/10.1128/AEM.02196-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4579446PMC
October 2015

In vivo biosynthesis of terpene nucleosides provides unique chemical markers of Mycobacterium tuberculosis infection.

Chem Biol 2015 Apr;22(4):516-526

Division of Rheumatology, Immunology and Allergy, Brigham and Women's Hospital, Harvard Medical School, Smith Building Room 538, 1 Jimmy Fund Way, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chembiol.2015.03.015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432472PMC
April 2015

Lipidomics and genomics of Mycobacterium tuberculosis reveal lineage-specific trends in mycolic acid biosynthesis.

Microbiologyopen 2014 Dec 19;3(6):823-35. Epub 2014 Sep 19.

Mycobacterial Division Research, NIMR, MRC, NW71AA, London, United Kingdom; Department of Medical Parasitology and Infection Biology, Swiss TPH, 4002, Basel, Switzerland; University of Basel, 4002, Basel, Switzerland.

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http://doi.wiley.com/10.1002/mbo3.193
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http://dx.doi.org/10.1002/mbo3.193DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4263507PMC
December 2014

Consequences of genomic diversity in Mycobacterium tuberculosis.

Semin Immunol 2014 Dec 22;26(6):431-44. Epub 2014 Oct 22.

Department of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, Socinstrasse 57, 4002 Basel, Switzerland; University of Basel, Petersplatz 1, Basel 4003, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.smim.2014.09.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4314449PMC
December 2014

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis.

Nature 2014 Oct 20;514(7523):494-7. Epub 2014 Aug 20.

1] Department of Archaeological Sciences, University of Tübingen, Ruemelinstraße 23, 72070 Tübingen, Germany [2] Senckenberg Centre for Human Evolution and Palaeoenvironment, University of Tübingen, Tübingen 72070, Germany [3] Max Planck Institute for Science and History, Khalaische Straße 10, 07745 Jena, Germany.

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http://dx.doi.org/10.1038/nature13591DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4550673PMC
October 2014

Impact of in vitro evolution on antigenic diversity of Mycobacterium bovis bacillus Calmette-Guerin (BCG).

Vaccine 2014 Oct 6;32(45):5998-6004. Epub 2014 Sep 6.

Department of Medicine, Division of Infectious Diseases, New York University School of Medicine, 522 First Avenue, Smilow 901, New York, New York, 10016, USA.

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http://dx.doi.org/10.1016/j.vaccine.2014.07.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4539939PMC
October 2014

KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes.

BMC Genomics 2014 Oct 9;15:881. Epub 2014 Oct 9.

Swiss Tropical and Public Health Institute, Socinstrasse 57, Basel 4051, Switzerland.

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http://dx.doi.org/10.1186/1471-2164-15-881DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4197298PMC
October 2014

A new method for extracting skin microbes allows metagenomic analysis of whole-deep skin.

PLoS One 2013 20;8(9):e74914. Epub 2013 Sep 20.

Institut de Biologia Evolutiva (CSIC [Consejo Superior de Investigaciones Científicas] - Universitat Pompeu Fabra), Barcelona, Catalonia, Spain ; Joint Research Unit on Genomics and Health, Centre for Public Health Research (CSISP) and Cavanilles Institute for Biodiversity and Evolutionary Biology (University of Valencia), Valencia, Spain.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3779245/pdf/pone
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http://dx.plos.org/10.1371/journal.pone.0074914
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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0074914PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3779245PMC
May 2014

Mixed infection by Legionella pneumophila in outbreak patients.

Int J Med Microbiol 2014 May 14;304(3-4):307-13. Epub 2013 Nov 14.

Unidad Mixta Genómica y Salud, FISABIO-Salud Pública, Universidad de Valencia, Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Valencia, Spain; CIBER en Epidemiología y Salud Pública (CIBERESP), Spain. Electronic address:

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http://dx.doi.org/10.1016/j.ijmm.2013.11.002DOI Listing
May 2014

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.

Nat Genet 2013 Oct 1;45(10):1176-82. Epub 2013 Sep 1.

1] Genomics and Health Unit, Centre for Public Health Research (CSISP-FISABIO), Valencia, Spain. [2] CIBER (Centros de Investigación Biomédica en Red) in Epidemiology and Public Health, Barcelona, Spain.

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http://dx.doi.org/10.1038/ng.2744DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3800747PMC
October 2013

Staphylococcus prevails in the skin microbiota of long-term immunodeficient mice.

Environ Microbiol 2012 Aug 24;14(8):2087-98. Epub 2012 Apr 24.

Institut de Biologia Evolutiva CSIC-UPF, Dr. Aiguader 88, 08003 Barcelona, Spain.

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http://dx.doi.org/10.1111/j.1462-2920.2012.02756.xDOI Listing
August 2012

Quantifying nonvertical inheritance in the evolution of Legionella pneumophila.

Mol Biol Evol 2011 Feb 20;28(2):985-1001. Epub 2010 Oct 20.

Unidad Mixta de Investigación Genómica y Salud CSISP-UV/Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Valencia, Spain.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msq278DOI Listing
February 2011

Legionellosis outbreak associated with asphalt paving machine, Spain, 2009.

Emerg Infect Dis 2010 Sep;16(9):1381-7

Universidad de Valencia/Instituto Cavanilles de Biodiversidad y Biologia Evolutiva, Valencia, Spain.

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http://dx.doi.org/10.3201/eid1609.100248DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3294975PMC
September 2010

Comparison of clinical and environmental samples of Legionella pneumophila at the nucleotide sequence level.

Infect Genet Evol 2009 Sep 22;9(5):882-8. Epub 2009 May 22.

Instituto Cavanilles de Biodiversidad y Biología Evolutiva, Universidad de Valencia, Apartado Oficial 22085, 46071 Valencia, Spain.

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http://dx.doi.org/10.1016/j.meegid.2009.05.013DOI Listing
September 2009

Direct sequencing of Legionella pneumophila from respiratory samples for sequence-based typing analysis.

J Clin Microbiol 2009 Sep 15;47(9):2901-5. Epub 2009 Jul 15.

Institut Cavanilles de Biodiversitat i Biologia Evolutiva, University of Valencia, Apartado Oficial 22085, Valencia 46071, Spain.

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http://dx.doi.org/10.1128/JCM.00268-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2738094PMC
September 2009

Population structure and recombination in environmental isolates of Legionella pneumophila.

Environ Microbiol 2007 Mar;9(3):643-56

Institut Cavanilles de Biodiversitat i Biologia Evolutiva and Departament de Genètica, Universitat de València, 46071 València, Spain.

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http://dx.doi.org/10.1111/j.1462-2920.2006.01184.xDOI Listing
March 2007

Genetic variability in environmental isolates of Legionella pneumophila from Comunidad Valenciana (Spain).

Environ Microbiol 2006 Jun;8(6):1056-63

Institut Cavanilles de Biodiversitat i Biologia Evolutiva and Departament de Genètica, Universitat de València, 46071 Valencia, Spain.

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http://dx.doi.org/10.1111/j.1462-2920.2006.00997.xDOI Listing
June 2006