Mingkun Li

Mingkun Li

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Mingkun Li

Mingkun Li

Publications by authors named "Mingkun Li"

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35Publications

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Evidence of Neutral Evolution of Mitochondrial DNA in Human Hepatocellular Carcinoma.

Genome Biol Evol 2019 10;11(10):2909-2916

Beijing Advanced Innovation Center for Food Nutrition and Human Health, College of Biological Sciences, China Agricultural University, Beijing 100193, China.

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http://dx.doi.org/10.1093/gbe/evz214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6804334PMC
October 2019

Sharing of heteroplasmies between human liver lobes varies across the mtDNA genome.

Sci Rep 2019 Aug 2;9(1):11219. Epub 2019 Aug 2.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, D-04103, Leipzig, Germany.

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http://dx.doi.org/10.1038/s41598-019-47570-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6677727PMC
August 2019

Transcriptionally Active Lung Microbiome and Its Association with Bacterial Biomass and Host Inflammatory Status.

mSystems 2018 Sep-Oct;3(5). Epub 2018 Oct 30.

MOH Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory, Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China.

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http://msystems.asm.org/lookup/doi/10.1128/mSystems.00199-18
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http://dx.doi.org/10.1128/mSystems.00199-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6208642PMC
October 2018

Site-specific selection reveals selective constraints and functionality of tumor somatic mtDNA mutations.

J Exp Clin Cancer Res 2017 11 28;36(1):168. Epub 2017 Nov 28.

State Key Laboratory of Cancer Biology and Experimental Teaching Center of Basic Medicine, Fourth Military Medical University, 169 Changle West Road, Xi'an, 710032, China.

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http://dx.doi.org/10.1186/s13046-017-0638-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5704541PMC
November 2017

Metabolic syndrome and stroke: A meta-analysis of prospective cohort studies.

J Clin Neurosci 2017 Jun 6;40:34-38. Epub 2017 Mar 6.

Institute of Neuroscience, The Second Affiliated Hospital, Guangzhou Medical University, Guangzhou, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.jocn.2017.01.018DOI Listing
June 2017

Metagenomic Analysis Identified Human Rhinovirus B91 Infection in an Adult Suffering from Severe Pneumonia.

Am J Respir Crit Care Med 2017 06;195(11):1535-1536

2 Institute of Pathogen Biology of Chinese Academy of Medical Sciences Beijing, P. R. China.

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http://dx.doi.org/10.1164/rccm.201609-1908LEDOI Listing
June 2017

Genotyping of human rhinovirus in adult patients with acute respiratory infections identified predominant infections of genotype A21.

Sci Rep 2017 01 27;7:41601. Epub 2017 Jan 27.

MOH Key Laboratory of Systems Biology of Pathogens and Christophe Mérieux Laboratory, IPB, CAMS-Fondation Mérieux, Institute of Pathogen Biology (IPB), Chinese Academy of Medical Sciences (CAMS) &Peking Union Medical College, Beijing 100730, P. R. China.

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http://dx.doi.org/10.1038/srep41601DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5269714PMC
January 2017

A Filmy Black-Phosphorus Polyimide Saturable Absorber for Q-Switched Operation in an Erbium-Doped Fiber Laser.

Materials (Basel) 2016 Nov 11;9(11). Epub 2016 Nov 11.

MOE Key Laboratory of Space Applied Physics and Chemistry, Shaanxi Key Laboratory of Optical Information Technology, School of Science, Northwestern Polytechnical University, Xi'an 710072, China.

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http://www.mdpi.com/1996-1944/9/11/917
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http://dx.doi.org/10.3390/ma9110917DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5457205PMC
November 2016

Age-Related and Heteroplasmy-Related Variation in Human mtDNA Copy Number.

PLoS Genet 2016 Mar 15;12(3):e1005939. Epub 2016 Mar 15.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.

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http://dx.doi.org/10.1371/journal.pgen.1005939DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4792396PMC
March 2016

Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations.

Proc Natl Acad Sci U S A 2015 Feb 9;112(8):2491-6. Epub 2015 Feb 9.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D04103 Leipzig, Germany;

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http://dx.doi.org/10.1073/pnas.1419651112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4345623PMC
February 2015

Improved calibration of the human mitochondrial clock using ancient genomes.

Mol Biol Evol 2014 Oct 5;31(10):2780-92. Epub 2014 Aug 5.

UCL Genetics Institute, Department of Genetics, Evolution and Environment, University College London, London, United Kingdom

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http://dx.doi.org/10.1093/molbev/msu222DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166928PMC
October 2014

Human paternal and maternal demographic histories: insights from high-resolution Y chromosome and mtDNA sequences.

Investig Genet 2014 24;5:13. Epub 2014 Sep 24.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig D04103, Germany.

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http://dx.doi.org/10.1186/2041-2223-5-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4174254PMC
September 2014

Transmission from centenarians to their offspring of mtDNA heteroplasmy revealed by ultra-deep sequencing.

Aging (Albany NY) 2014 Jun;6(6):454-67

Department of Biological, Geological and Environmental Sciences, Laboratory of Molecular Anthropology and Centre for Genome Biology, University of Bologna, Bologna, Italy.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4100808PMC
http://dx.doi.org/10.18632/aging.100661DOI Listing
June 2014

Early Austronesians: into and out of Taiwan.

Am J Hum Genet 2014 Mar;94(3):426-36

Graduate Institute of Clinical Medical Science, China Medical University, Taichung City 40402, Taiwan. Electronic address:

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http://dx.doi.org/10.1016/j.ajhg.2014.02.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951936PMC
March 2014

The saliva microbiome of Pan and Homo.

BMC Microbiol 2013 Sep 11;13:204. Epub 2013 Sep 11.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig D-04103, Germany.

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http://dx.doi.org/10.1186/1471-2180-13-204DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3848470PMC
September 2013

Fidelity of capture-enrichment for mtDNA genome sequencing: influence of NUMTs.

Nucleic Acids Res 2012 Oct 30;40(18):e137. Epub 2012 May 30.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D04103, Leipzig, Germany.

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http://dx.doi.org/10.1093/nar/gks499DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3467033PMC
October 2012

A new approach for detecting low-level mutations in next-generation sequence data.

Genome Biol 2012 May 23;13(5):R34. Epub 2012 May 23.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D04103, Leipzig, Germany.

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http://dx.doi.org/10.1186/gb-2012-13-5-r34DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3446287PMC
May 2012

Contrasting maternal and paternal histories in the linguistic context of Burkina Faso.

Mol Biol Evol 2012 Apr 29;29(4):1213-23. Epub 2011 Nov 29.

Max Planck Research Group on Comparative Population Linguistics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.

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http://dx.doi.org/10.1093/molbev/msr291DOI Listing
April 2012

Magnetic Fe3O4-PS-polyacetylene composite microspheres showing chirality derived from helical substituted polyacetylene.

Macromol Rapid Commun 2012 Apr 13;33(8):672-7. Epub 2012 Feb 13.

State Key Laboratory of Chemical Resource Engineering; College of Materials Science and Engineering, Beijing University of Chemical Technology, Beijing 100029, China.

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http://dx.doi.org/10.1002/marc.201100776DOI Listing
April 2012

High diversity of the saliva microbiome in Batwa Pygmies.

PLoS One 2011 16;6(8):e23352. Epub 2011 Aug 16.

Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0023352PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156759PMC
February 2012

High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: high diversity and demographic inferences.

Eur J Hum Genet 2011 Sep 13;19(9):988-94. Epub 2011 Apr 13.

Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, Germany.

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http://dx.doi.org/10.1038/ejhg.2011.62DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3179362PMC
September 2011

Larger mitochondrial DNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra.

Nat Commun 2011 ;2:228

Department of Evolutionary Anthropology, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.

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http://www.nature.com/articles/ncomms1235
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http://dx.doi.org/10.1038/ncomms1235DOI Listing
August 2011

High-throughput sequencing of complete human mtDNA genomes from the Philippines.

Genome Res 2011 Jan 8;21(1):1-11. Epub 2010 Dec 8.

Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany.

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http://dx.doi.org/10.1101/gr.107615.110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3012916PMC
January 2011

The tendency to recreate ancestral CG dinucleotides in the human genome.

BMC Evol Biol 2011 Jan 5;11. Epub 2011 Jan 5.

CAS-MPG Partner Institute of Computational Biology, Shanghai Institutes of Biological Sciences, Chinese Academy of Sciences, 200000 Shanghai, PR China.

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http://dx.doi.org/10.1186/1471-2148-11-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3025853PMC
January 2011

Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes.

Am J Hum Genet 2010 Aug;87(2):237-49

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, D04103 Leipzig, Germany.

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http://dx.doi.org/10.1016/j.ajhg.2010.07.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2917713PMC
August 2010

Comparative analysis of human saliva microbiome diversity by barcoded pyrosequencing and cloning approaches.

Anal Biochem 2009 Aug 3;391(1):64-8. Epub 2009 May 3.

Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany.

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http://dx.doi.org/10.1016/j.ab.2009.04.034DOI Listing
August 2009

Comparative analysis of essential genes and nonessential genes in Escherichia coli K12.

Mol Genet Genomics 2008 Jan 18;279(1):87-94. Epub 2007 Oct 18.

Bioinformatics Center, Northwest A&F University, 712100, Yangling, Shaanxi, China.

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http://dx.doi.org/10.1007/s00438-007-0298-xDOI Listing
January 2008

Confidence-based active learning.

IEEE Trans Pattern Anal Mach Intell 2006 Aug;28(8):1251-61

DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.

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http://dx.doi.org/10.1109/TPAMI.2006.156DOI Listing
August 2006