Ming-Cheng Luo

Ming-Cheng Luo

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Ming-Cheng Luo

Ming-Cheng Luo

Publications by authors named "Ming-Cheng Luo"

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Recombination between homoeologous chromosomes induced in durum wheat by the Aegilops speltoides Su1-Ph1 suppressor.

Theor Appl Genet 2019 Dec 16;132(12):3265-3276. Epub 2019 Sep 16.

Department of Plant Sciences, University of California, Davis, CA, 95616, USA.

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http://link.springer.com/10.1007/s00122-019-03423-z
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http://dx.doi.org/10.1007/s00122-019-03423-zDOI Listing
December 2019

Rapid evolution of α-gliadin gene family revealed by analyzing Gli-2 locus regions of wild emmer wheat.

Funct Integr Genomics 2019 Nov 13;19(6):993-1005. Epub 2019 Jun 13.

United States Department of Agriculture-Agricultural Research Service USDA-ARS, Western Regional Research Center, 800 Buchanan Street, Albany, CA, 94710, USA.

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http://dx.doi.org/10.1007/s10142-019-00686-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797660PMC
November 2019

The improved assembly of 7DL chromosome provides insight into the structure and evolution of bread wheat.

Plant Biotechnol J 2019 Aug 31. Epub 2019 Aug 31.

State Key Laboratory of Crop Stress Biology in Arid Areas, College of Agronomy and Yangling Branch of China Wheat Improvement Center, Northwest A&F University, Yangling, Shaanxi, China.

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http://dx.doi.org/10.1111/pbi.13240DOI Listing
August 2019

Integrated physical map of bread wheat chromosome arm 7DS to facilitate gene cloning and comparative studies.

N Biotechnol 2019 Jan 8;48:12-19. Epub 2018 Mar 8.

Institute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, Šlechtitelů 31, 783 71 Olomouc, Czech Republic. Electronic address:

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http://dx.doi.org/10.1016/j.nbt.2018.03.003DOI Listing
January 2019

Reassessment of the evolution of wheat chromosomes 4A, 5A, and 7B.

Theor Appl Genet 2018 Nov 23;131(11):2451-2462. Epub 2018 Aug 23.

Department of Plant Sciences, University of California, Davis, CA, USA.

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http://dx.doi.org/10.1007/s00122-018-3165-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6208953PMC
November 2018

Analysis of Brachypodium genomes with genome-wide optical maps.

Genome 2018 Aug 8;61(8):559-565. Epub 2018 Jun 8.

a Department of Plant Sciences, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.1139/gen-2018-0013DOI Listing
August 2018

Chromosome-scale pseudomolecules refined by optical, physical and genetic maps in flax.

Plant J 2018 07 21;95(2):371-384. Epub 2018 May 21.

Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON, K1A 0C6, Canada.

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http://dx.doi.org/10.1111/tpj.13944DOI Listing
July 2018

Dynamic Evolution of α-Gliadin Prolamin Gene Family in Homeologous Genomes of Hexaploid Wheat.

Sci Rep 2018 03 26;8(1):5181. Epub 2018 Mar 26.

United States Department of Agriculture-Agricultural Research Service, Western Regional Research Center, Albany, California, 94710, USA.

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http://dx.doi.org/10.1038/s41598-018-23570-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5980091PMC
March 2018

Introgression of the Suppressor into Wheat.

Front Plant Sci 2017 20;8:2163. Epub 2017 Dec 20.

Department of Plant Sciences, University of California, Davis, Davis, CA, United States.

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http://dx.doi.org/10.3389/fpls.2017.02163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5742420PMC
December 2017

New insights into structural organization and gene duplication in a 1.75-Mb genomic region harboring the α-gliadin gene family in Aegilops tauschii, the source of wheat D genome.

Plant J 2017 Nov 9;92(4):571-583. Epub 2017 Oct 9.

United States Department of Agriculture-Agricultural Research Service, Western Regional Research Center, Albany, CA, 94710, USA.

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http://dx.doi.org/10.1111/tpj.13675DOI Listing
November 2017

Optical Nano-mapping and Analysis of Plant Genomes.

Methods Mol Biol 2016 ;1429:103-17

BioNano Genomics, 9640 Towne Centre Drive, Ste. 100, San Diego, CA, 92121, USA.

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http://link.springer.com/content/pdf/10.1007%2F978-1-4939-36
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http://dx.doi.org/10.1007/978-1-4939-3622-9_9DOI Listing
October 2017

Hybrid assembly of the large and highly repetitive genome of , a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm.

Genome Res 2017 05 27;27(5):787-792. Epub 2017 Jan 27.

Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins School of Medicine, Baltimore, Maryland 21205, USA.

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http://dx.doi.org/10.1101/gr.213405.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5411773PMC
May 2017

Solar Radiation-Associated Adaptive SNP Genetic Differentiation in Wild Emmer Wheat, .

Front Plant Sci 2017 14;8:258. Epub 2017 Mar 14.

Department of Biotechnology, College of Agriculture, Guangdong Ocean UniversityZhanjiang, China; The State Key Lab of Crop Breeding Technology Innovation and Integration, China National Seed Group Co. Ltd.Wuhan, China.

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http://dx.doi.org/10.3389/fpls.2017.00258DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5348526PMC
March 2017

Rapid evolutionary dynamics in a 2.8-Mb chromosomal region containing multiple prolamin and resistance gene families in Aegilops tauschii.

Plant J 2016 09 21;87(5):495-506. Epub 2016 Aug 21.

United States Department of Agriculture-Agricultural Research Service, Western Regional Research Center, Albany, CA, 94710, USA.

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http://dx.doi.org/10.1111/tpj.13214DOI Listing
September 2016

Genetic mapping of SrCad and SNP marker development for marker-assisted selection of Ug99 stem rust resistance in wheat.

Theor Appl Genet 2016 Jul 18;129(7):1373-1382. Epub 2016 Apr 18.

Agriculture and Agri-Food Canada, Morden Research and Development Centre, 101 Route 100, Morden, MB, R6M 1Y5, Canada.

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http://dx.doi.org/10.1007/s00122-016-2709-zDOI Listing
July 2016

Analysis of tandem gene copies in maize chromosomal regions reconstructed from long sequence reads.

Proc Natl Acad Sci U S A 2016 07 27;113(29):7949-56. Epub 2016 Jun 27.

Waksman Institute of Microbiology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854;

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http://dx.doi.org/10.1073/pnas.1608775113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4961126PMC
July 2016

Chromosomal genomics facilitates fine mapping of a Russian wheat aphid resistance gene.

Theor Appl Genet 2015 Jul 11;128(7):1373-83. Epub 2015 Apr 11.

Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany, Šlechtitelů 31, 783 71, Olomouc, Czech Republic.

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http://link.springer.com/10.1007/s00122-015-2512-2
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http://dx.doi.org/10.1007/s00122-015-2512-2DOI Listing
July 2015

Genetic and physical mapping of powdery mildew resistance gene MlHLT in Chinese wheat landrace Hulutou.

Theor Appl Genet 2015 Feb 4;128(2):365-73. Epub 2014 Dec 4.

Department of Plant Genetics and Breeding/State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing, 100193, China.

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http://link.springer.com/10.1007/s00122-014-2436-2
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http://dx.doi.org/10.1007/s00122-014-2436-2DOI Listing
February 2015

Identification of a robust molecular marker for the detection of the stem rust resistance gene Sr45 in common wheat.

Theor Appl Genet 2014 Apr 28;127(4):947-55. Epub 2014 Jan 28.

CSIRO Plant Industry, GPO Box 1600, Canberra, ACT, 2601, Australia,

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http://link.springer.com/10.1007/s00122-014-2270-6
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http://dx.doi.org/10.1007/s00122-014-2270-6DOI Listing
April 2014

Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.).

Funct Integr Genomics 2014 Mar 8;14(1):59-73. Epub 2014 Mar 8.

International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, India,

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http://dx.doi.org/10.1007/s10142-014-0363-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4273598PMC
March 2014

SNP-revealed genetic diversity in wild emmer wheat correlates with ecological factors.

BMC Evol Biol 2013 Aug 13;13:169. Epub 2013 Aug 13.

Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Chinese Academy of Sciences, Wuhan, Hubei 430074, China.

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http://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2148-13-169DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3751623PMC
August 2013

Aegilops tauschii single nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat.

New Phytol 2013 May 4;198(3):925-37. Epub 2013 Feb 4.

Triticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan, 611130, China.

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http://dx.doi.org/10.1111/nph.12164DOI Listing
May 2013

Recent emergence of the wheat Lr34 multi-pathogen resistance: insights from haplotype analysis in wheat, rice, sorghum and Aegilops tauschii.

Theor Appl Genet 2013 Mar 2;126(3):663-72. Epub 2012 Nov 2.

CSIRO Plant Industry, GPO Box 1600, Canberra, ACT, 2601, Australia.

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http://dx.doi.org/10.1007/s00122-012-2009-1DOI Listing
March 2013

Wheat Zapper: a flexible online tool for colinearity studies in grass genomes.

Funct Integr Genomics 2013 Mar 10;13(1):11-7. Epub 2013 Mar 10.

Computer Information Systems Department, The University of Jordan, Amman, 11942, Jordan.

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http://dx.doi.org/10.1007/s10142-013-0317-4DOI Listing
March 2013

Genetic diversity revealed by single nucleotide polymorphism markers in a worldwide germplasm collection of durum wheat.

Int J Mol Sci 2013 Mar 28;14(4):7061-88. Epub 2013 Mar 28.

Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Chinese Academy of Sciences, Wuhan 430074, Hubei, China.

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http://www.mdpi.com/1422-0067/14/4/7061
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http://dx.doi.org/10.3390/ijms14047061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3645677PMC
March 2013

PIECE: a database for plant gene structure comparison and evolution.

Nucleic Acids Res 2013 Jan 24;41(Database issue):D1159-66. Epub 2012 Nov 24.

USDA-Agriculture Research Service, Western Regional Research Center, Albany, CA 94710, USA.

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http://dx.doi.org/10.1093/nar/gks1109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531150PMC
January 2013

Exploring the diploid wheat ancestral A genome through sequence comparison at the high-molecular-weight glutenin locus region.

Mol Genet Genomics 2012 Dec 28;287(11-12):855-66. Epub 2012 Sep 28.

United States Department of Agriculture-Agricultural Research Service, Western Regional Research Center, Albany, CA 94710, USA.

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http://dx.doi.org/10.1007/s00438-012-0721-9DOI Listing
December 2012

PAPP2C interacts with the atypical disease resistance protein RPW8.2 and negatively regulates salicylic acid-dependent defense responses in Arabidopsis.

Mol Plant 2012 Sep 14;5(5):1125-37. Epub 2012 Feb 14.

Institute for Bioscience and Biotechnology Research and Department of Plant Sciences and Landscape Architecture, University of Maryland, Rockville, MD 20850, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S167420521460078
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http://dx.doi.org/10.1093/mp/sss008DOI Listing
September 2012

The origin of spelt and free-threshing hexaploid wheat.

J Hered 2012 May-Jun;103(3):426-41. Epub 2012 Feb 29.

Department of Plant Sciences, University of California, Davis, CA 95616, USA.

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http://jhered.oxfordjournals.org/content/early/2012/02/29/jh
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http://jhered.oxfordjournals.org/cgi/doi/10.1093/jhered/esr1
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http://dx.doi.org/10.1093/jhered/esr152DOI Listing
August 2012

A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes.

Mar Biotechnol (NY) 2012 Jun 19;14(3):343-57. Epub 2011 Nov 19.

National Center for Cool and Cold Water Aquaculture, ARS-USDA, 11861 Leetown Road, Kearneysville, WV 25430, USA.

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http://dx.doi.org/10.1007/s10126-011-9418-zDOI Listing
June 2012

Fine genetic mapping of greenbug aphid-resistance gene Gb3 in Aegilops tauschii.

Theor Appl Genet 2012 Feb 30;124(3):555-64. Epub 2011 Oct 30.

Texas AgriLife Research, 6500 Amarillo Blvd W, Amarillo, TX 79106, USA.

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http://dx.doi.org/10.1007/s00122-011-1728-zDOI Listing
February 2012

Characterizing the walnut genome through analyses of BAC end sequences.

Plant Mol Biol 2012 Jan 19;78(1-2):95-107. Epub 2011 Nov 19.

Department of Plant Sciences, University of California, Davis, CA 95616, USA.

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http://link.springer.com/10.1007/s11103-011-9849-y
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http://dx.doi.org/10.1007/s11103-011-9849-yDOI Listing
January 2012

Identification and utilization of a sow thistle powdery mildew as a poorly adapted pathogen to dissect post-invasion non-host resistance mechanisms in Arabidopsis.

J Exp Bot 2011 Mar 30;62(6):2117-29. Epub 2010 Dec 30.

College of Horticulture and College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, People's Republic of China.

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http://dx.doi.org/10.1093/jxb/erq406DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3060691PMC
March 2011

A new implementation of high-throughput five-dimensional clone pooling strategy for BAC library screening.

BMC Genomics 2010 Dec 6;11:692. Epub 2010 Dec 6.

Department of Plant Sciences, University of California, Davis, CA 95516, USA.

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http://dx.doi.org/10.1186/1471-2164-11-692DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3016418PMC
December 2010

RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development.

Nucleic Acids Res 2010 Jul 23;38(Web Server issue):W313-20. Epub 2010 May 23.

Department of Plant Sciences, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.1093/nar/gkq425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896120PMC
July 2010

A first generation BAC-based physical map of the rainbow trout genome.

BMC Genomics 2009 Oct 8;10:462. Epub 2009 Oct 8.

National Center for Cool and Cold Water Aquaculture, ARS-USDA, Kearneysville, WV 25430, USA.

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http://dx.doi.org/10.1186/1471-2164-10-462DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2763887PMC
October 2009

A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat.

BMC Genomics 2009 Oct 27;10:496. Epub 2009 Oct 27.

1Genomics and Gene Discovery Research Unit, USDA-ARS, Western Regional Research Center, 800 Buchanan Street, Albany, CA 94710,USA.

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http://dx.doi.org/10.1186/1471-2164-10-496DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774330PMC
October 2009

Rapid development of PCR-based genome-specific repetitive DNA junction markers in wheat.

Genome 2009 Jun;52(6):576-87

Genomics and Gene Discovery Unit, USDA/ARS Western Regional Research Center, Albany, CA 94710, USA.

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http://dx.doi.org/10.1139/g09-033DOI Listing
June 2009

Structural characterization of Brachypodium genome and its syntenic relationship with rice and wheat.

Plant Mol Biol 2009 May 29;70(1-2):47-61. Epub 2009 Jan 29.

Genomics and Gene Discovery Research Unit, USDA-ARS, Western Regional Research Center, 800 Buchanan Street, Albany, CA 94710, USA.

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http://dx.doi.org/10.1007/s11103-009-9456-3DOI Listing
May 2009

Saturation and comparative mapping of the genomic region harboring Hessian fly resistance gene H26 in wheat.

Theor Appl Genet 2009 May 26;118(8):1589-99. Epub 2009 Mar 26.

Department of Entomology, North Dakota State University, Fargo, ND 58105, USA.

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http://dx.doi.org/10.1007/s00122-009-1006-5DOI Listing
May 2009

The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences.

Funct Integr Genomics 2008 May 6;8(2):135-47. Epub 2007 Nov 6.

Genomics and Gene Discovery Research Unit, USDA-ARS Western Regional Research Center, 800 Buchanan Street, Albany, CA 94710, USA.

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http://www.springerlink.com/index/hj58k178t1r85488.pdf
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http://link.springer.com/content/pdf/10.1007/s10142-007-0062
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http://link.springer.com/10.1007/s10142-007-0062-7
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http://dx.doi.org/10.1007/s10142-007-0062-7DOI Listing
May 2008

BatchPrimer3: a high throughput web application for PCR and sequencing primer design.

BMC Bioinformatics 2008 May 29;9:253. Epub 2008 May 29.

Department of Plant Sciences, University of California, CA 95616, USA.

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http://dx.doi.org/10.1186/1471-2105-9-253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2438325PMC
May 2008

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

Nature 2008 Apr;452(7190):991-6

Hawaii Agriculture Research Center, Aiea, Hawaii 96701, USA.

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http://dx.doi.org/10.1038/nature06856DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2836516PMC
April 2008

Efficacy of clone fingerprinting methodologies.

Genomics 2007 Jan 2;89(1):160-5. Epub 2006 Oct 2.

Arizona Genomics Computational Laboratory, BIO5 Institute, University of Arizona, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1016/j.ygeno.2006.08.008DOI Listing
January 2007

GenoProfiler: batch processing of high-throughput capillary fingerprinting data.

Bioinformatics 2007 Jan 2;23(2):240-2. Epub 2006 Oct 2.

Department of Plant Sciences, University of California, Davis, CA 95616, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btl494DOI Listing
January 2007

Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics.

Genome 2006 Sep;49(9):1099-108

United States Department of Agriculture - Agricultural Research Service, Western Regional Research Center, 800 Buchanan St., Albany, CA 94710, USA.

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http://dx.doi.org/10.1139/g06-087DOI Listing
September 2006

Molecular characterization of a diagnostic DNA marker for domesticated tetraploid wheat provides evidence for gene flow from wild tetraploid wheat to hexaploid wheat.

Mol Biol Evol 2006 Jul 4;23(7):1386-96. Epub 2006 May 4.

Department of Plant Sciences, University of California, Davis, USA.

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http://dx.doi.org/10.1093/molbev/msl004DOI Listing
July 2006

Comparative genetic maps reveal extreme crossover localization in the Aegilops speltoides chromosomes.

Theor Appl Genet 2005 Oct 11;111(6):1098-106. Epub 2005 Oct 11.

Department of Plant Sciences, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.1007/s00122-005-0035-yDOI Listing
October 2005

Deletion polymorphism in wheat chromosome regions with contrasting recombination rates.

Genetics 2004 Nov;168(3):1665-75

Department of Plant Sciences, University of California, Davis, California 95616, USA.

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http://dx.doi.org/10.1534/genetics.103.024927DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1448774PMC
November 2004