Milind Mahajan

Milind Mahajan

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Milind Mahajan

Milind Mahajan

Publications by authors named "Milind Mahajan"

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45Publications

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Whole-Exome Sequencing (WES) for Illumina Short Read Sequencers Using Solution-Based Capture.

Methods Mol Biol 2020 ;2076:85-108

Sema4, a Mount Sinai venture, Stamford, CT, USA.

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http://link.springer.com/10.1007/978-1-4939-9882-1_5
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http://dx.doi.org/10.1007/978-1-4939-9882-1_5DOI Listing
January 2020

A pilot study of ultra-deep targeted sequencing of plasma DNA identifies driver mutations in hepatocellular carcinoma.

Oncogene 2018 07 9;37(27):3740-3752. Epub 2018 Apr 9.

Department of Medicine, Liver Cancer Program, Tisch Cancer Institute, Graduate School of Biomedical Sciences, Division of Liver Diseases, Icahn School of Medicine at Mount Sinai, New York, USA.

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http://dx.doi.org/10.1038/s41388-018-0206-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6035113PMC
July 2018

Trunk mutational events present minimal intra- and inter-tumoral heterogeneity in hepatocellular carcinoma.

J Hepatol 2017 12 24;67(6):1222-1231. Epub 2017 Aug 24.

Mount Sinai Liver Cancer Program (Divisions of Liver Diseases, Department of Medicine, Department of Pathology, Recanati Miller Transplantation Institute), Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, USA; Liver Cancer Translational Research Laboratory, BCLC Group, IDIBAPS, Liver Unit, Hospital Clinic, University of Barcelona, Barcelona, Catalonia, Spain; Institució Catalana de Recerca i Estudis Avançats, Barcelona, Catalonia, Spain. Electronic address:

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http://dx.doi.org/10.1016/j.jhep.2017.08.013DOI Listing
December 2017

Exploration of small RNA-seq data for small non-coding RNAs in Human Colorectal Cancer.

J Genomics 2017 28;5:16-31. Epub 2017 Feb 28.

Division of Plastic Surgery, Department of Surgery, College of Medicine, Pennsylvania State University, Hershey, PA, USA.

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http://dx.doi.org/10.7150/jgen.18856DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5362762PMC
February 2017

A Comprehensive NGS Data Analysis of Differentially Regulated miRNAs, piRNAs, lncRNAs and sn/snoRNAs in Triple Negative Breast Cancer.

J Cancer 2017 11;8(4):578-596. Epub 2017 Feb 11.

Division of Plastic Surgery, Department of Surgery, College of Medicine, Pennsylvania State University, 500 University Drive, Hershey, PA 17033.

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http://dx.doi.org/10.7150/jca.17633DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5370502PMC
February 2017

Clinicopathological indices to predict hepatocellular carcinoma molecular classification.

Liver Int 2016 Jan 29;36(1):108-18. Epub 2015 Jun 29.

Division of Liver Diseases, Department of Medicine, Liver Cancer Program, Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

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http://dx.doi.org/10.1111/liv.12889DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4674393PMC
January 2016

How do students react to analyzing their own genomes in a whole-genome sequencing course?: outcomes of a longitudinal cohort study.

Genet Med 2015 Nov 29;17(11):866-74. Epub 2015 Jan 29.

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

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http://dx.doi.org/10.1038/gim.2014.203DOI Listing
November 2015

Preparing the next generation of genomicists: a laboratory-style course in medical genomics.

BMC Med Genomics 2015 Aug 12;8:47. Epub 2015 Aug 12.

Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1498, New York, NY, 10029, USA.

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http://dx.doi.org/10.1186/s12920-015-0124-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4534145PMC
August 2015

Deep sequencing identifies noncanonical editing of Ebola and Marburg virus RNAs in infected cells.

MBio 2014 Nov 4;5(6):e02011. Epub 2014 Nov 4.

Department of Microbiology, Icahn School of Medicine at Mount Sinai, New York, New York, USA

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http://dx.doi.org/10.1128/mBio.02011-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4222107PMC
November 2014

Regulation of Gγ-globin gene by ATF2 and its associated proteins through the cAMP-response element.

PLoS One 2013 6;8(11):e78253. Epub 2013 Nov 6.

Department of Molecular and Cell Biology, The University of Texas at Dallas, Richardson, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0078253PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3819381PMC
August 2014

Most genetic risk for autism resides with common variation.

Nat Genet 2014 Aug 20;46(8):881-5. Epub 2014 Jul 20.

1] Seaver Autism Center for Research and Treatment, Icahn School of Medicine at Mount Sinai, New York, New York, USA. [2] Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, New York, USA. [3] Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA. [4] Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, New York, USA. [5] Department of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, New York, USA. [6] The Mindich Child Health and Development Institute, Icahn School of Medicine at Mount Sinai, New York, New York, USA.

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http://dx.doi.org/10.1038/ng.3039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4137411PMC
August 2014

Informed decision-making among students analyzing their personal genomes on a whole genome sequencing course: a longitudinal cohort study.

Genome Med 2013 30;5(12):113. Epub 2013 Dec 30.

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA ; Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, 1425 Madison Avenue, New York, NY 10029, USA.

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http://dx.doi.org/10.1186/gm518DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3971344PMC
May 2014

Analytical validation of whole exome and whole genome sequencing for clinical applications.

BMC Med Genomics 2014 Apr 23;7:20. Epub 2014 Apr 23.

Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

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http://dx.doi.org/10.1186/1755-8794-7-20DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4022392PMC
April 2014

Nanoemulsion-based intranasal drug delivery system of saquinavir mesylate for brain targeting.

Drug Deliv 2014 Mar 16;21(2):148-54. Epub 2013 Oct 16.

R. C. Patel Institute of Pharmaceutical Education and Research , Shirpur , India and.

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http://dx.doi.org/10.3109/10717544.2013.838014DOI Listing
March 2014

Genetic diagnosis of neuroacanthocytosis disorders using exome sequencing.

Mov Disord 2012 Apr 28;27(4):539-43. Epub 2011 Oct 28.

Department of Neurology, James J Peters Veterans Affairs Medical Center, Bronx, New York 10468, USA.

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http://dx.doi.org/10.1002/mds.24020DOI Listing
April 2012

Dual function of histone H3 lysine 36 methyltransferase ASH1 in regulation of Hox gene expression.

PLoS One 2011 28;6(11):e28171. Epub 2011 Nov 28.

Genome Structure and Regulation, School of Biomedical Science and Biochemical Genetics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0028171PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3225378PMC
April 2012

A multiprotein complex necessary for both transcription and DNA replication at the β-globin locus.

EMBO J 2010 Oct 31;29(19):3260-71. Epub 2010 Aug 31.

Department of Genetics, The Anlyan Center, Yale University School of Medicine, New Haven, CT, USA.

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http://dx.doi.org/10.1038/emboj.2010.204DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2957209PMC
October 2010

Chromatin architecture and transcription factor binding regulate expression of erythrocyte membrane protein genes.

Mol Cell Biol 2009 Oct 17;29(20):5399-412. Epub 2009 Aug 17.

Department of Pediatrics, Yale University School of Medicine, 333 Cedar Street, P.O. Box 208064, New Haven, CT 06520-8064, USA.

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http://dx.doi.org/10.1128/MCB.00777-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2756878PMC
October 2009

A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation.

Genome Res 2008 Aug 16;18(8):1224-37. Epub 2008 May 16.

Department of Genetics, Yale University School of Medicine, New Haven, CT 06520-8005, USA.

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http://dx.doi.org/10.1101/gr.075804.107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2493437PMC
August 2008

Control of beta globin genes.

J Cell Biochem 2007 Nov;102(4):801-10

Department of Human Genetics, Yale University School of Medicine, New Haven, Connecticut, USA.

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http://dx.doi.org/10.1002/jcb.21507DOI Listing
November 2007

A limited number of genes are involved in the differentiation of germinal center B cells.

J Cell Biochem 2006 Dec;99(5):1308-25

Department of Genetics, Yale University School of Medicine, 300 Cedar St., New Haven, Connecticut 06510, USA.

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http://dx.doi.org/10.1002/jcb.20952DOI Listing
December 2006

Multi-protein complexes at the beta-globin locus.

Brief Funct Genomic Proteomic 2006 Mar 22;5(1):62-5. Epub 2006 Feb 22.

Department of Genetics, The Anlyan Center, Yale University School of Medicine, 300 Cedar St., New Haven, CT 06510, USA.

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http://dx.doi.org/10.1093/bfgp/ell001DOI Listing
March 2006

Heterogeneous nuclear ribonucleoprotein C1/C2, MeCP1, and SWI/SNF form a chromatin remodeling complex at the beta-globin locus control region.

Proc Natl Acad Sci U S A 2005 Oct 10;102(42):15012-7. Epub 2005 Oct 10.

Department of Genetics, The Anlyan Center, Yale University School of Medicine, New Haven, CT 06511, USA.

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http://dx.doi.org/10.1073/pnas.0507596102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1257739PMC
October 2005

GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis.

Proc Natl Acad Sci U S A 2002 Mar 26;99(5):2924-9. Epub 2002 Feb 26.

Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1073/pnas.052706999DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC122449PMC
March 2002

DNA-dependent adenosine triphosphatase (helicaselike transcription factor) activates beta-globin transcription in K562 cells.

Blood 2002 Jan;99(1):348-56

Department of Genetics, Boyer Center for Molecular Medicine, Yale University School of Medicine, New Haven, CT 06536, USA.

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http://dx.doi.org/10.1182/blood.v99.1.348DOI Listing
January 2002