Mikhail G Dozmorov

Mikhail G Dozmorov

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Mikhail G Dozmorov

Mikhail G Dozmorov

Publications by authors named "Mikhail G Dozmorov"

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multiHiCcompare: joint normalization and comparative analysis of complex Hi-C experiments.

Bioinformatics 2019 Sep;35(17):2916-2923

Department of Biostatistics, Virginia Commonwealth University, Richmond, VA, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6736119PMC
September 2019

R Tutorial: Detection of Differentially Interacting Chromatin Regions From Multiple Hi-C Datasets.

Curr Protoc Bioinformatics 2019 Jun 24;66(1):e76. Epub 2019 May 24.

Department of Biostatistics, Virginia Commonwealth University, Richmond, Virginia.

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http://dx.doi.org/10.1002/cpbi.76DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6588411PMC
June 2019

OKN-007 Increases temozolomide (TMZ) Sensitivity and Suppresses TMZ-Resistant Glioblastoma (GBM) Tumor Growth.

Transl Oncol 2019 Feb 20;12(2):320-335. Epub 2018 Nov 20.

Stephenson Cancer Center, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA; Department of NeurologyUniversity of Oklahoma Health Sciences Center, Oklahoma City, OK, USA.

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http://dx.doi.org/10.1016/j.tranon.2018.10.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6251232PMC
February 2019

GitHub Statistics as a Measure of the Impact of Open-Source Bioinformatics Software.

Front Bioeng Biotechnol 2018 18;6:198. Epub 2018 Dec 18.

Department of Biostatistics, Virginia Commonwealth University, Richmond, VA, United States.

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http://dx.doi.org/10.3389/fbioe.2018.00198DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6306043PMC
December 2018

Reforming disease classification system-are we there yet?

Ann Transl Med 2018 Nov;6(Suppl 1):S30

Department of Biostatistics, Virginia Commonwealth University, Richmond, Virginia, USA.

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http://dx.doi.org/10.21037/atm.2018.09.36DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6291543PMC
November 2018

HDAC2-dependent Antipsychotic-like Effects of Chronic Treatment with the HDAC Inhibitor SAHA in Mice.

Neuroscience 2018 09 17;388:102-117. Epub 2018 Jul 17.

Department of Physiology and Biophysics, Virginia Commonwealth University School of Medicine, Richmond, VA 23298, United States; Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States; Department of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States; Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY 10029, United States. Electronic address:

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http://dx.doi.org/10.1016/j.neuroscience.2018.07.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6129430PMC
September 2018

Gene expression profiling of primary human type I alveolar epithelial cells exposed to Bacillus anthracis spores reveals induction of neutrophil and monocyte chemokines.

Microb Pathog 2018 Aug 25;121:9-21. Epub 2018 Apr 25.

Pulmonary and Critical Care Division of the Department of Internal Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA; Department of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA. Electronic address:

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http://dx.doi.org/10.1016/j.micpath.2018.04.039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6077097PMC
August 2018

Characterizing the efficacy of cancer therapeutics in patient-derived xenograft models of metastatic breast cancer.

Breast Cancer Res Treat 2018 Jul 12;170(2):221-234. Epub 2018 Mar 12.

Department of Pathology, Virginia Commonwealth University, Richmond, VA, 23298, USA.

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http://dx.doi.org/10.1007/s10549-018-4748-4DOI Listing
July 2018

HiCcompare: an R-package for joint normalization and comparison of HI-C datasets.

BMC Bioinformatics 2018 07 31;19(1):279. Epub 2018 Jul 31.

Department of Biostatistics, Virginia Commonwealth University, Richmond, VA, 23298, USA.

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http://dx.doi.org/10.1186/s12859-018-2288-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6069782PMC
July 2018

Disease classification: from phenotypic similarity to integrative genomics and beyond.

Brief Bioinform 2018 Jun 22. Epub 2018 Jun 22.

Department of Biostatistics, Virginia Commonwealth University, 830 East Main Street, Richmond, VA, USA.

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http://dx.doi.org/10.1093/bib/bby049DOI Listing
June 2018

Coamplification of protects -amplified breast cancers from targeted therapy.

Proc Natl Acad Sci U S A 2018 03 23;115(11):E2594-E2603. Epub 2018 Feb 23.

Department of Oral and Craniofacial Molecular Biology, Philips Institute for Oral Health Research, VCU School of Dentistry and Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298;

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http://dx.doi.org/10.1073/pnas.1717820115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5856537PMC
March 2018

Proceedings of the 2017 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.

BMC Bioinformatics 2017 12 28;18(Suppl 14):498. Epub 2017 Dec 28.

Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA.

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http://dx.doi.org/10.1186/s12859-017-1887-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5751547PMC
December 2017

Epigenomic annotation-based interpretation of genomic data: from enrichment analysis to machine learning.

Bioinformatics 2017 Oct;33(20):3323-3330

Department of Biostatistics, Virginia Commonwealth University, Richmond, VA 23298, USA.

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https://academic.oup.com/bioinformatics/article/33/20/3323/3
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http://dx.doi.org/10.1093/bioinformatics/btx414DOI Listing
October 2017

Identification of breast cancer associated variants that modulate transcription factor binding.

PLoS Genet 2017 Sep 28;13(9):e1006761. Epub 2017 Sep 28.

Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, Virginia, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1006761DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5619690PMC
September 2017

Age-associated DNA methylation changes in naive CD4 T cells suggest an evolving autoimmune epigenotype in aging T cells.

Epigenomics 2017 04 21;9(4):429-445. Epub 2017 Mar 21.

Division of Rheumatology, Department of Internal Medicine, University of Michigan, Ann Arbor, MI 48109, USA.

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http://dx.doi.org/10.2217/epi-2016-0143DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5549647PMC
April 2017

The role of epigenomics in personalized medicine.

Expert Rev Precis Med Drug Dev 2017 31;2(1):33-45. Epub 2017 Jan 31.

Department of Pharmacotherapy and Outcomes Science, Virginia Commonwealth University School of Pharmacy, Richmond, Virginia, USA.

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http://dx.doi.org/10.1080/23808993.2017.1284557DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5737812PMC
January 2017

Establishing an analytic pipeline for genome-wide DNA methylation.

Clin Epigenetics 2016 27;8:45. Epub 2016 Apr 27.

Department of Human and Molecular Genetics, Virginia Commonwealth University, Richmond, VA USA.

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http://dx.doi.org/10.1186/s13148-016-0212-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4848848PMC
December 2016

Human effector B lymphocytes express ARID3a and secrete interferon alpha.

J Autoimmun 2016 Dec 10;75:130-140. Epub 2016 Aug 10.

Department of Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA; Department of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA; Department of Cell Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jaut.2016.08.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5134920PMC
December 2016

Expression and methylation data from SLE patient and healthy control blood samples subdivided with respect to ARID3a levels.

Data Brief 2016 Dec 31;9:213-9. Epub 2016 Aug 31.

Department of Medicine, Oklahoma University Health Sciences Center, Oklahoma City, Oklahoma, USA; Department of Microbiology and Immunology, Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA; Department of Cell Biology, Oklahoma University Health Sciences Center, Oklahoma City, Oklahoma, USA.

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http://dx.doi.org/10.1016/j.dib.2016.08.049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5021782PMC
December 2016

Proceedings of the 2016 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.

BMC Bioinformatics 2016 10 6;17(Suppl 13):356. Epub 2016 Oct 6.

Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR, USA.

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http://dx.doi.org/10.1186/s12859-016-1213-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5073803PMC
October 2016

Improving sensitivity of linear regression-based cell type-specific differential expression deconvolution with per-gene vs. global significance threshold.

BMC Bioinformatics 2016 Oct 6;17(Suppl 13):334. Epub 2016 Oct 6.

Department of Biostatistics, Virginia Commonwealth University, School of Medicine, PO Box 980032, Richmond, VA, 23298, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/s12859-016-1226-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5073979PMC
October 2016

GenomeRunner web server: regulatory similarity and differences define the functional impact of SNP sets.

Bioinformatics 2016 08 1;32(15):2256-63. Epub 2016 Apr 1.

Department of Arthritis and Clinical Immunology, Oklahoma Medical Research Foundation, Oklahoma City, OK, USA Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, OK, USA.

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http://dx.doi.org/10.1093/bioinformatics/btw169DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4965636PMC
August 2016

A Whole Methylome CpG-SNP Association Study of Psychosis in Blood and Brain Tissue.

Schizophr Bull 2016 07 9;42(4):1018-26. Epub 2015 Dec 9.

Center for Biomarker Research and Precision Medicine, Virginia Commonwealth University, Richmond, VA;

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http://dx.doi.org/10.1093/schbul/sbv182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4903046PMC
July 2016

Polycomb repressive complex 2 epigenomic signature defines age-associated hypermethylation and gene expression changes.

Epigenetics 2015 16;10(6):484-95. Epub 2015 Apr 16.

a Department of Biostatistics; Virginia Commonwealth University ; Richmond , VA , USA.

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http://dx.doi.org/10.1080/15592294.2015.1040619DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4623031PMC
March 2016

Epigenomic functional characterization of genetic susceptibility variants in systemic vasculitis.

J Autoimmun 2016 Feb 20;67:76-81. Epub 2015 Oct 20.

Department of Biostatistics, Virginia Commonwealth University, Richmond, VA, USA.

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http://dx.doi.org/10.1016/j.jaut.2015.10.002DOI Listing
February 2016

PDGFRα signaling drives adipose tissue fibrosis by targeting progenitor cell plasticity.

Genes Dev 2015 Jun 27;29(11):1106-19. Epub 2015 May 27.

Immunobiology and Cancer Research Program, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma 73104, USA; Department of Cell Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104, USA;

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http://dx.doi.org/10.1101/gad.260554.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4470280PMC
June 2015

Differential effects of selective frankincense (Ru Xiang) essential oil versus non-selective sandalwood (Tan Xiang) essential oil on cultured bladder cancer cells: a microarray and bioinformatics study.

Chin Med 2014 2;9:18. Epub 2014 Jul 2.

Department of Urology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA ; Department of Physiology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA ; Department of Urology, University of Oklahoma Medical Center, 920 Stanton L. Young Blvd., WP 3150, Oklahoma City, OK 73034, USA.

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http://dx.doi.org/10.1186/1749-8546-9-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086286PMC
July 2014

Epigenomic elements enriched in the promoters of autoimmunity susceptibility genes.

Epigenetics 2014 Feb 8;9(2):276-85. Epub 2013 Nov 8.

Oklahoma Medical Research Foundation; Arthritis and Clinical Immunology Research Program; Oklahoma City, OK USA; GENYO; Centre for Genomics and Oncological Research; Pfizer; University of Granada; Andalusian Regional Government; Granada, Spain.

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http://dx.doi.org/10.4161/epi.27021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3962538PMC
February 2014

Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjögren's syndrome.

Nat Genet 2013 Nov 6;45(11):1284-92. Epub 2013 Oct 6.

1] Arthritis and Clinical Immunology Research Program, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma, USA. [2] Department of Pathology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.

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http://dx.doi.org/10.1038/ng.2792DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3867192PMC
November 2013

Proceedings of the 2012 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. Introduction.

BMC Bioinformatics 2012 11;13 Suppl 15:S1. Epub 2012 Sep 11.

Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation, 825 N,E, 13th Street, Oklahoma City, OK 73104-5005, USA.

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http://dx.doi.org/10.1186/1471-2105-13-S15-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3439718PMC
April 2013

The curcuminoid CLEFMA selectively induces cell death in H441 lung adenocarcinoma cells via oxidative stress.

Invest New Drugs 2012 Apr 22;30(2):558-67. Epub 2010 Dec 22.

Department of Pharmaceutical Sciences, University of Oklahoma Health Science Center, 1110 North Stonewall Avenue, Oklahoma, OK 73117, USA.

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http://dx.doi.org/10.1007/s10637-010-9610-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3110543PMC
April 2012

GenomeRunner: automating genome exploration.

Bioinformatics 2012 Feb 6;28(3):419-20. Epub 2011 Dec 6.

Arthritis and Clinical Immunology Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK 73104-5005, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr666DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268239PMC
February 2012

Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) conference. Introduction.

BMC Bioinformatics 2011 Oct 18;12 Suppl 10:S1. Epub 2011 Oct 18.

Arthritis and Immunology Research Program, Oklahoma Medical Research Foundation 825 NE 13th Street, Oklahoma City, OK 73104-5005, USA.

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http://dx.doi.org/10.1186/1471-2105-12-S10-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236831PMC
October 2011

High-throughput processing and normalization of one-color microarrays for transcriptional meta-analyses.

BMC Bioinformatics 2011 Oct 18;12 Suppl 10:S2. Epub 2011 Oct 18.

Arthritis and Clinical Immunology Research Program, Oklahoma Medical Research Foundation 825 NE 13th Street, Oklahoma City, Oklahoma 73104-5005, USA.

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http://dx.doi.org/10.1186/1471-2105-12-S10-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236842PMC
October 2011

Predicting gene ontology from a global meta-analysis of 1-color microarray experiments.

BMC Bioinformatics 2011 Oct 18;12 Suppl 10:S14. Epub 2011 Oct 18.

Arthritis and Clinical Immunology Research Program, Oklahoma Medical Research Foundation 825 NE 13th Street, Oklahoma City, Oklahoma 73104-5005, USA.

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http://dx.doi.org/10.1186/1471-2105-12-S10-S14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3236836PMC
October 2011

5alpha-androstane-3alpha,17beta-diol selectively activates the canonical PI3K/AKT pathway: a bioinformatics-based evidence for androgen-activated cytoplasmic signaling.

Genomic Med 2007 27;1(3-4):139-46. Epub 2008 Feb 27.

Department of Urology, University of Oklahoma Health Sciences Center, 800 Research Parkway, Room 462, Oklahoma City, OK, 73104, USA.

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http://dx.doi.org/10.1007/s11568-008-9018-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2269037PMC
July 2011

A comprehensive and universal method for assessing the performance of differential gene expression analyses.

PLoS One 2010 Sep 9;5(9). Epub 2010 Sep 9.

Department of Arthritis and Immunology, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0012657PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2936572PMC
September 2010

Unique patterns of molecular profiling between human prostate cancer LNCaP and PC-3 cells.

Prostate 2009 Jul;69(10):1077-90

Department of Urology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73034, USA.

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http://dx.doi.org/10.1002/pros.20960DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2755240PMC
July 2009

Abnormal expression of differentiation related proteins and proteoglycan core proteins in the urothelium of patients with interstitial cystitis.

J Urol 2008 Feb 20;179(2):764-9. Epub 2007 Dec 20.

Department of Urology, College of Medicine, Oklahoma University Health Sciences Center, Oklahoma City, Oklahoma, USA.

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http://dx.doi.org/10.1016/j.juro.2007.09.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2652890PMC
February 2008

Systems biology approach for mapping the response of human urothelial cells to infection by Enterococcus faecalis.

BMC Bioinformatics 2007 Nov 1;8 Suppl 7:S2. Epub 2007 Nov 1.

Department of Urology, College of Medicine, Oklahoma University Health Sciences Center, PO Box 26901, Oklahoma City, OK 73190, USA.

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http://dx.doi.org/10.1186/1471-2105-8-S7-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2099488PMC
November 2007

Differentially expressed gene networks in cultured smooth muscle cells from normal and neuropathic bladder.

J Smooth Muscle Res 2007 Apr;43(2):55-72

Department of Urology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73034, USA.

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http://dx.doi.org/10.1540/jsmr.43.55DOI Listing
April 2007

Analysis of the interaction of extracellular matrix and phenotype of bladder cancer cells.

BMC Cancer 2006 Jan 13;6:12. Epub 2006 Jan 13.

Department of Urology, Oklahoma University Health Sciences Centre, Oklahoma City, OK 73104, USA.

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http://dx.doi.org/10.1186/1471-2407-6-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1360102PMC
January 2006