Michele Morgante

Michele Morgante

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Michele Morgante

Michele Morgante

Publications by authors named "Michele Morgante"

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Transgenerational Response to Nitrogen Deprivation in .

Int J Mol Sci 2019 Nov 8;20(22). Epub 2019 Nov 8.

Dipartimento di Scienze Agroalimentari, Ambientali e Animali, University of Udine, via delle Scienze 206, I-33100 Udine, Italy.

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http://dx.doi.org/10.3390/ijms20225587DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6888700PMC
November 2019

Genetic, epigenetic and genomic effects on variation of gene expression among grape varieties.

Plant J 2019 Sep 7;99(5):895-909. Epub 2019 Jun 7.

Department of Agricultural Food, Environmental and Animal Sciences, University of Udine, Udine, I-33100, Italy.

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http://dx.doi.org/10.1111/tpj.14370DOI Listing
September 2019

Common and specific responses to iron and phosphorus deficiencies in roots of apple tree (Malus × domestica).

Plant Mol Biol 2019 Sep 2;101(1-2):129-148. Epub 2019 Jul 2.

Dipartimento di Scienze Agroambientali, Alimentari e Animali, University of Udine, via delle Scienze 206, 33100, Udine, Italy.

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http://dx.doi.org/10.1007/s11103-019-00896-wDOI Listing
September 2019

Gene duplication and transposition of mobile elements drive evolution of the Rpv3 resistance locus in grapevine.

Plant J 2019 Sep 30. Epub 2019 Sep 30.

Department of Agricultural, Food, Environmental and Animal Sciences, University of Udine, via delle scienze 208, 33100, Udine, Italy.

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http://dx.doi.org/10.1111/tpj.14551DOI Listing
September 2019

Physiological and transcriptomic data highlight common features between iron and phosphorus acquisition mechanisms in white lupin roots.

Plant Sci 2019 Aug 3;285:110-121. Epub 2019 May 3.

Dipartimento di Scienze Agroalimentari, Ambientali e Animali, University of Udine, via delle Scienze 206, I-33100 Udine, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.plantsci.2019.04.026DOI Listing
August 2019

Physiological and RNA sequencing data of white lupin plants grown under Fe and P deficiency.

Data Brief 2019 Aug 28;25:104069. Epub 2019 May 28.

Dipartimento di Scienze Agroalimentari, Ambientali e Animali, University of Udine, via delle Scienze 206, I-33100, Udine, Italy.

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http://dx.doi.org/10.1016/j.dib.2019.104069DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6562269PMC
August 2019

Reduction of heterozygosity (ROH) as a method to detect mosaic structural variation.

Plant Biotechnol J 2017 07 16;15(7):791-793. Epub 2017 Mar 16.

Dipartimento di Scienze agroalimentari, ambientali e animali, Università di Udine, Udine, Italy.

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http://dx.doi.org/10.1111/pbi.12691DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5466433PMC
July 2017

Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation.

Mol Biol Evol 2016 10 7;33(10):2706-19. Epub 2016 Aug 7.

Istituto di Genomica Applicata (IGA), Udine, Italy Dipartimento di Scienze Agro-alimentari, Università di Udine, Ambientali e Animali (DI4A), Udine, Italy

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http://dx.doi.org/10.1093/molbev/msw161DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5026262PMC
October 2016

Identifying Genetic Signatures of Natural Selection Using Pooled Population Sequencing in Picea abies.

G3 (Bethesda) 2016 07 7;6(7):1979-89. Epub 2016 Jul 7.

Department of Ecology and Genetics, Evolutionary Biology Centre and Science for Life Laboratory, Uppsala University, 75236 Sweden.

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http://dx.doi.org/10.1534/g3.116.028753DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4938651PMC
July 2016

A Homolog of Blade-On-Petiole 1 and 2 (BOP1/2) Controls Internode Length and Homeotic Changes of the Barley Inflorescence.

Plant Physiol 2016 06 14;171(2):1113-27. Epub 2016 Apr 14.

Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, 06466 Stadt Seeland, Germany (M.J., Ma.M., A.H., F.S., T.R., T.S., B.S., S.B., U.S., N.S.);Institute of Plant Science and Resources, Okayama University, Okayama 710-0046, Japan (Sh.T., T.Y.);James Hutton Institute, Invergowrie, Dundee DD2 5DA, United Kingdom (A.D., R.W.);Leibniz Institute on Aging and Fritz-Lipmann Institute, 07745 Jena, Germany (St.T.);Applied Genomics Institute, University of Udine, 33100 Udine, Italy (Mi.M.); andDivision of Plant Sciences, University of Dundee, Dundee DD1 4HN, United Kingdom (R.W.)

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http://dx.doi.org/10.1104/pp.16.00124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4902598PMC
June 2016

Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome.

Mol Biol Evol 2015 Oct 14;32(10):2760-74. Epub 2015 Jul 14.

Centre for Research in Agricultural Genomics CSIC-IRTA-UAB-UB, Barcelona, Spain

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http://dx.doi.org/10.1093/molbev/msv152DOI Listing
October 2015

The Ty1-copia LTR retroelement family PARTC is highly conserved in conifers over 200 MY of evolution.

Gene 2015 Aug 14;568(1):89-99. Epub 2015 May 14.

Istituto di Genomica Applicata, Via J. Linussio 51, 33100 Udine, Italy; Università degli Studi di Udine, Via delle Scienze 208, 33100 Udine, Italy.

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http://dx.doi.org/10.1016/j.gene.2015.05.028DOI Listing
August 2015

LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome.

DNA Res 2015 Feb 26;22(1):91-100. Epub 2014 Nov 26.

Department of Agricultural, Food, and Environmental Sciences, University of Pisa, Pisa I-56124, Italy

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http://dx.doi.org/10.1093/dnares/dsu042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4379980PMC
February 2015

An extensive evaluation of read trimming effects on Illumina NGS data analysis.

PLoS One 2013 23;8(12):e85024. Epub 2013 Dec 23.

Institute of Applied Genomics, Udine, Italy ; Center for Computational Biology and Bioinformatics, Columbia University, New York, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0085024PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3871669PMC
October 2014

Structural variation and genome complexity: is dispensable really dispensable?

Curr Opin Plant Biol 2014 Apr 16;18:31-6. Epub 2014 Feb 16.

Dipartimento di Scienze Agrarie e Ambientali, Università di Udine, 33100 Udine, Italy; Istituto di Genomica Applicata (IGA), 33100 Udine, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.pbi.2014.01.003DOI Listing
April 2014

Three distinct mutational mechanisms acting on a single gene underpin the origin of yellow flesh in peach.

Plant J 2013 Oct 8;76(2):175-87. Epub 2013 Aug 8.

Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Via delle Scienze 206, 33100, Udine, Italy.

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http://dx.doi.org/10.1111/tpj.12283DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4223380PMC
October 2013

Breeding with rare defective alleles (BRDA): a natural Populus nigra HCT mutant with modified lignin as a case study.

New Phytol 2013 May 25;198(3):765-76. Epub 2013 Feb 25.

Department of Plant Systems Biology, Flanders Institute for Biotechnology, Technologiepark 927, 9052, Gent, Belgium.

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http://dx.doi.org/10.1111/nph.12179DOI Listing
May 2013

The quest for rare variants: pooled multiplexed next generation sequencing in plants.

Front Plant Sci 2012 28;3:133. Epub 2012 Jun 28.

Istituto di Genomica Applicata, Udine, Italy.

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http://dx.doi.org/10.3389/fpls.2012.00133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3384946PMC
August 2012

Analysis of the barley bract suppression gene Trd1.

Theor Appl Genet 2012 Jun 7;125(1):33-45. Epub 2012 Mar 7.

The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, Scotland, UK.

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http://link.springer.com/10.1007/s00122-012-1814-x
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http://dx.doi.org/10.1007/s00122-012-1814-xDOI Listing
June 2012

Phenotypic plasticity, QTL mapping and genomic characterization of bud set in black poplar.

BMC Plant Biol 2012 Apr 3;12:47. Epub 2012 Apr 3.

Department for Innovation in Biological, Agro-food and Forest systems, University of Tuscia, Via S, Camillo de Lellis, Viterbo 01100, Italy.

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http://dx.doi.org/10.1186/1471-2229-12-47DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3378457PMC
April 2012

Selective sweep at the Rpv3 locus during grapevine breeding for downy mildew resistance.

Theor Appl Genet 2012 Feb 27;124(2):277-86. Epub 2011 Sep 27.

Dipartimento di Scienze Agrarie e Ambientali, University of Udine, via delle scienze 208, 33100, Udine, Italy.

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http://link.springer.com/10.1007/s00122-011-1703-8
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http://dx.doi.org/10.1007/s00122-011-1703-8DOI Listing
February 2012

High resolution mapping of Dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H.

Theor Appl Genet 2012 Feb 30;124(2):373-84. Epub 2011 Sep 30.

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstr. 3, 06466, Gatersleben, Germany.

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http://link.springer.com/10.1007/s00122-011-1712-7
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http://dx.doi.org/10.1007/s00122-011-1712-7DOI Listing
February 2012

Accelerating the domestication of forest trees in a changing world.

Trends Plant Sci 2012 Feb 29;17(2):64-72. Epub 2011 Dec 29.

Department for Innovation in Biological, Agro-food and Forest Systems, University of Tuscia, Via S. Camillo de Lellis, Viterbo 01100, Italy.

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http://dx.doi.org/10.1016/j.tplants.2011.11.005DOI Listing
February 2012

Genetic dissection of barley morphology and development.

Plant Physiol 2011 Feb 18;155(2):617-27. Epub 2010 Nov 18.

Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, United Kingdom.

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http://dx.doi.org/10.1104/pp.110.166249DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3032454PMC
February 2011

Expansion and subfunctionalisation of flavonoid 3',5'-hydroxylases in the grapevine lineage.

BMC Genomics 2010 Oct 12;11:562. Epub 2010 Oct 12.

Dipartimento di Scienze Agrarie e Ambientali, University of Udine, via delle Scienze 208, 33100 Udine, Italy.

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http://dx.doi.org/10.1186/1471-2164-11-562DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091711PMC
October 2010

Analysis of transposons and repeat composition of the sunflower (Helianthus annuus L.) genome.

Theor Appl Genet 2010 Feb 14;120(3):491-508. Epub 2009 Oct 14.

Genetics Section, Department of Crop Plant Biology, University of Pisa, Pisa, Italy.

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http://dx.doi.org/10.1007/s00122-009-1170-7DOI Listing
February 2010

Resistance to Plasmopara viticola in grapevine 'Bianca' is controlled by a major dominant gene causing localised necrosis at the infection site.

Theor Appl Genet 2009 Dec 11;120(1):163-76. Epub 2009 Oct 11.

Dipartimento di Scienze Agrarie e Ambientali, University of Udine, via delle Scienze 208, 33100, Udine, Italy.

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http://dx.doi.org/10.1007/s00122-009-1167-2DOI Listing
December 2009

Recombinant near-isogenic lines: a resource for the mendelization of heterotic QTL in maize.

Mol Genet Genomics 2009 Apr 17;281(4):447-57. Epub 2009 Jan 17.

Department of Biomolecular Sciences and Biotechnology, University of Milan, via Celoria 26, 20133, Milan, Italy.

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http://dx.doi.org/10.1007/s00438-008-0422-6DOI Listing
April 2009

Automated FingerPrint Background removal: FPB.

BMC Bioinformatics 2009 Apr 30;10:127. Epub 2009 Apr 30.

Istituto di Genomica Applicata (IGA), via J, Linussio 51, I-33100 Udine, Italy.

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http://dx.doi.org/10.1186/1471-2105-10-127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2689866PMC
April 2009

QTL detection in maize testcross progenies as affected by related and unrelated testers.

Theor Appl Genet 2009 Mar 29;118(5):993-1004. Epub 2009 Jan 29.

Department of Agroenvironmental Sciences and Technologies, University of Bologna, Bologna, Italy.

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http://dx.doi.org/10.1007/s00122-008-0956-3DOI Listing
March 2009

A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotyping.

BMC Plant Biol 2008 Dec 16;8:127. Epub 2008 Dec 16.

Dipartimento di Scienze Agrarie e Ambientali, University of Udine, Via delle Scienze 208, 33100 Udine, Italy.

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http://dx.doi.org/10.1186/1471-2229-8-127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2625351PMC
December 2008

Control of steric hindrance on restriction enzyme reactions with surface-bound DNA nanostructures.

Nano Lett 2008 Dec;8(12):4140-5

Sincrotrone Trieste S.C.p.A., S.S. 14 Km 163.5, 34012 Basovizza, Trieste, Italy.

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http://dx.doi.org/10.1021/nl802370gDOI Listing
December 2008

A unified classification system for eukaryotic transposable elements.

Nat Rev Genet 2007 Dec;8(12):973-82

Institute of Plant Biology, University Zurich, Zollikerstrasse 107, CH-8008 Zurich, Switzerland.

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http://dx.doi.org/10.1038/nrg2165DOI Listing
December 2007

Transposable elements and the plant pan-genomes.

Curr Opin Plant Biol 2007 Apr 14;10(2):149-55. Epub 2007 Feb 14.

Dipartimento di Scienze Agrarie ed Ambientali, Universita' di Udine, Via delle Scienze 208, I-33100 Udine, Italy.

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http://dx.doi.org/10.1016/j.pbi.2007.02.001DOI Listing
April 2007

Plant genome organisation and diversity: the year of the junk!

Authors:
Michele Morgante

Curr Opin Biotechnol 2006 Apr 10;17(2):168-73. Epub 2006 Mar 10.

Dipartimento di Scienze Agrarie ed Ambientali, Universita' di Udine, Via delle Scienze 208, I-33100 Udine, Italy.

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http://dx.doi.org/10.1016/j.copbio.2006.03.001DOI Listing
April 2006

Structured motifs search.

J Comput Biol 2005 Oct;12(8):1065-82

Department of Crop Sciences and Agricultural Engineering, via delle Scienze 206, 33100 Udine, Italy.

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http://dx.doi.org/10.1089/cmb.2005.12.1065DOI Listing
October 2005

Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize.

Nat Genet 2005 Sep 31;37(9):997-1002. Epub 2005 Jul 31.

Dipartimento di Scienze Agrarie ed Ambientali, Universita' di Udine, Via delle Scienze 208, 33100 Udine, Italy.

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http://dx.doi.org/10.1038/ng1615DOI Listing
September 2005

Evolution of DNA sequence nonhomologies among maize inbreds.

Plant Cell 2005 Feb 19;17(2):343-60. Epub 2005 Jan 19.

DuPont Crop Genetics Research, Wilmington, Delaware 19880, USA.

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http://dx.doi.org/10.1105/tpc.104.025627DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC548811PMC
February 2005

Mapping and sequencing complex genomes: let's get physical!

Nat Rev Genet 2004 Aug;5(8):578-88

Department of Plant and Soil Sciences and Delaware Biotechnology Institute, University of Delaware, Newark, Delaware 19711, USA.

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http://dx.doi.org/10.1038/nrg1404DOI Listing
August 2004

Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep.

Proc Natl Acad Sci U S A 2004 Jun 25;101(26):9885-90. Epub 2004 May 25.

DuPont Crop Genetics, Molecular Genetics Group, 1 Innovation Way, Newark, DE 19711, USA.

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http://dx.doi.org/10.1073/pnas.0307839101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC470768PMC
June 2004

Corn and humans: recombination and linkage disequilibrium in two genomes of similar size.

Trends Genet 2004 Feb;20(2):103-11

DuPont Crop Genetics, Experimental Station E353, PO Box 80353, Wilmington DE 19880-0353, USA.

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http://dx.doi.org/10.1016/j.tig.2003.12.002DOI Listing
February 2004

Monitoring genome-wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thaliana.

FEBS Lett 2003 Nov;554(3):373-80

Laboratory of Plant Molecular Biology, The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA.

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http://dx.doi.org/10.1016/s0014-5793(03)01194-3DOI Listing
November 2003

Contrasting effects of selection on sequence diversity and linkage disequilibrium at two phytoene synthase loci.

Plant Cell 2003 Aug;15(8):1795-806

Department of Plant and Soil Sciences, University of Delaware, and Delaware Biotechnology Institute, Newark, DE 19716, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC167170PMC
http://dx.doi.org/10.1105/tpc.012526DOI Listing
August 2003

From plant genomics to breeding practice.

Curr Opin Biotechnol 2003 Apr;14(2):214-9

Dipartimento di Produzione Vegetale e Tecnologie Agrarie, Universita' di Udine, Via delle Scienze 208, 33100, Udine, Italy.

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http://dx.doi.org/10.1016/s0958-1669(03)00028-4DOI Listing
April 2003

Genome-wide gene expression profiling in Arabidopsis thaliana reveals new targets of abscisic acid and largely impaired gene regulation in the abi1-1 mutant.

J Cell Sci 2002 Dec;115(Pt 24):4891-900

Laboratory of Plant Molecular Biology, The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA.

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http://dx.doi.org/10.1242/jcs.00175DOI Listing
December 2002

TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes.

Plant J 2002 Oct;32(1):77-92

Department of Vegetable Crops, University of California, Davis, CA 95616, USA.

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http://dx.doi.org/10.1046/j.1365-313x.2002.01404.xDOI Listing
October 2002

SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines.

BMC Genet 2002 Oct 7;3:19. Epub 2002 Oct 7.

DuPont Crop Genetics, Delaware Technology Park, Suite 200, P,O, Box 6104, Newark, Delaware 19714, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC130040PMC
http://dx.doi.org/10.1186/1471-2156-3-19DOI Listing
October 2002

Comparative genomic mapping between a 754 kb region flanking DREB1A in Arabidopsis thaliana and maize.

Plant Mol Biol 2002 Mar-Apr;48(5-6):741-50

Department of Agroenvironmental Science and Technology, University of Bologna, Italy.

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http://link.springer.com/content/pdf/10.1023/A:1014890008579
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http://dx.doi.org/10.1023/a:1014890008579DOI Listing
June 2002

Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes.

Nat Genet 2002 Feb 22;30(2):194-200. Epub 2002 Jan 22.

E.I. duPont de Nemours and Co., DuPont Agriculture & Nutrition-Molecular Genetics, Newark, Delaware, USA.

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http://dx.doi.org/10.1038/ng822DOI Listing
February 2002