Michael Schroeder

Michael Schroeder

UNVERIFIED PROFILE

Are you Michael Schroeder?   Register this Author

Register author
Michael Schroeder

Michael Schroeder

Publications by authors named "Michael Schroeder"

Are you Michael Schroeder?   Register this Author

100Publications

1722Reads

30Profile Views

Tie line framework to optimize non-enveloped virus recovery in aqueous two-phase systems.

J Chromatogr B Analyt Technol Biomed Life Sci 2019 Sep 2;1126-1127:121744. Epub 2019 Aug 2.

Department of Chemical Engineering, Michigan Technological University, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jchromb.2019.121744DOI Listing
September 2019

Genome-wide association analysis of diverticular disease points towards neuromuscular, connective tissue and epithelial pathomechanisms.

Gut 2019 05 19;68(5):854-865. Epub 2019 Jan 19.

Medical Department 1, University Hospital Dresden, Technische Universität Dresden (TU Dresden), Dresden, Germany.

View Article

Download full-text PDF

Source
http://gut.bmj.com/lookup/doi/10.1136/gutjnl-2018-317619
Publisher Site
http://dx.doi.org/10.1136/gutjnl-2018-317619DOI Listing
May 2019

Characterizing the relation of functional and Early Folding Residues in protein structures using the example of aminoacyl-tRNA synthetases.

PLoS One 2018 30;13(10):e0206369. Epub 2018 Oct 30.

Applied Computer Sciences & Biosciences, University of Applied Sciences Mittweida, Mittweida, Saxony, Germany.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0206369PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6207335PMC
April 2019

Surface Cation Segregation and Chromium Deposition on the Double-Perovskite Oxide PrBaCoO.

ACS Appl Mater Interfaces 2018 Mar 28;10(10):8621-8629. Epub 2018 Feb 28.

Institute of Physical Chemistry , RWTH Aachen University , Landoltweg 2 , 52074 Aachen , Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/acsami.7b17881DOI Listing
March 2018

Cancer Genome Interpreter annotates the biological and clinical relevance of tumor alterations.

Genome Med 2018 03 28;10(1):25. Epub 2018 Mar 28.

Research Program on Biomedical Informatics (GRIB), IMIM Hospital del Mar Medical, Research Institute and Pompeu Fabra University, Barcelona, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13073-018-0531-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5875005PMC
March 2018

MAGPIE: Simplifying access and execution of computational models in the life sciences.

PLoS Comput Biol 2017 12 15;13(12):e1005898. Epub 2017 Dec 15.

Institute for Medical Informatics and Biometry, Medizinische Fakultät Carl Gustav Carus, Technische Universität Dresden, Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1005898DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5747461PMC
December 2017

Tissue Engineering Strategies for Auricular Reconstruction.

J Craniofac Surg 2017 Nov;28(8):2007-2011

*University of South Dakota, Sanford School of Medicine; Sioux Falls, SD †Birmingham Children's Hospital, Birmingham, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1097/SCS.0000000000003753DOI Listing
November 2017

Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key.

PLoS One 2013 21;8(6):e65894. Epub 2013 Jun 21.

Biotechnology Center (BIOTEC), TU Dresden, Dresden, Germany.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0065894PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3689763PMC
October 2017

From malaria to cancer: Computational drug repositioning of amodiaquine using PLIP interaction patterns.

Sci Rep 2017 09 12;7(1):11401. Epub 2017 Sep 12.

Biotechnology Center (BIOTEC), Technische Universität Dresden, 01307, Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41598-017-11924-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5595859PMC
September 2017

Meta-analysis of Cancer Gene Profiling Data.

Methods Mol Biol 2016 ;1381:211-22

Biotechnology Center, Technische Universität Dresden, Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-3204-7_12DOI Listing
October 2016

New HSP27 inhibitors efficiently suppress drug resistance development in cancer cells.

Oncotarget 2016 Oct;7(42):68156-68169

Biotechnology Center, Technische Universität Dresden, 01307 Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.18632/oncotarget.11905DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5356546PMC
October 2016

Drug target prioritization by perturbed gene expression and network information.

Sci Rep 2015 Nov 30;5:17417. Epub 2015 Nov 30.

Bioinformatics Group, Biotechnology Center (BIOTEC), Technische Universitat Dresden, Tatzberg 47-49, 01307 Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/srep17417DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4663505PMC
November 2015

Polypharmacology rescored: protein-ligand interaction profiles for remote binding site similarity assessment.

Prog Biophys Mol Biol 2014 Nov-Dec;116(2-3):174-86. Epub 2014 Jun 9.

Biotechnology Center (BIOTEC), TU Dresden, Dresden, Germany. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.pbiomolbio.2014.05.006DOI Listing
September 2015

PLIP: fully automated protein-ligand interaction profiler.

Nucleic Acids Res 2015 Jul 14;43(W1):W443-7. Epub 2015 Apr 14.

Biotechnology Center (BIOTEC), TU Dresden, Tatzberg 47-49, 01307 Dresden, Germany

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkv315DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489249PMC
July 2015

Discovering relations between indirectly connected biomedical concepts.

J Biomed Semantics 2015 6;6:28. Epub 2015 Jul 6.

Biotechnology Center, Technische Universität Dresden, Tatzberg 47/49, Dresden, 01307 Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13326-015-0021-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4492092PMC
July 2015

Formalizing biomedical concepts from textual definitions.

J Biomed Semantics 2015 2;6:22. Epub 2015 Apr 2.

Biotechnology Center, Technische Universität Dresden, Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13326-015-0015-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4422531PMC
May 2015

Prediction of drug gene associations via ontological profile similarity with application to drug repositioning.

Methods 2015 Mar 8;74:71-82. Epub 2014 Dec 8.

Biotechnology Center, Technische Universität Dresden, Germany. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ymeth.2014.11.017DOI Listing
March 2015

In silico prescription of anticancer drugs to cohorts of 28 tumor types reveals targeting opportunities.

Cancer Cell 2015 Mar;27(3):382-96

Biomedical Genomics Lab, Research Program on Biomedical Informatics, IMIM Hospital del Mar Medical Research Institute and Universitat Pompeu Fabra, Doctor Aiguader 88, 08003 Barcelona, Catalonia, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA), Passeig Lluís Companys 23, 08010 Barcelona, Spain. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ccell.2015.02.007DOI Listing
March 2015

OncodriveROLE classifies cancer driver genes in loss of function and activating mode of action.

Bioinformatics 2014 Sep;30(17):i549-55

Research Unit on Biomedical Informatics, Department of Experimental and Health Sciences, Universitat Pompeu Fabra, E08003 Barcelona and Institució Catalana de Recerca i Estudis Avançats (ICREA), E08010 Barcelona, Spain Research Unit on Biomedical Informatics, Department of Experimental and Health Sciences, Universitat Pompeu Fabra, E08003 Barcelona and Institució Catalana de Recerca i Estudis Avançats (ICREA), E08010 Barcelona, Spain.

View Article

Download full-text PDF

Source
https://academic.oup.com/bioinformatics/article-lookup/doi/1
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btu467DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4147920PMC
September 2014

Network information improves cancer outcome prediction.

Brief Bioinform 2014 Jul 18;15(4):612-25. Epub 2012 Dec 18.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bib/bbs083DOI Listing
July 2014

Visualizing multidimensional cancer genomics data.

Genome Med 2013 31;5(1). Epub 2013 Jan 31.

Research Program on Biomedical Informatics - GRIB, Universitat Pompeu Fabra (UPF), Parc de Recerca Biomèdica de Barcelona (PRBB), Dr. Aiguader 88, E-08003 Barcelona, Spain ; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.

View Article

Download full-text PDF

Source
http://link.springer.com/content/pdf/10.1186%2Fgm413.pdf
Web Search
http://genomemedicine.com/content/5/1/9
Publisher Site
http://dx.doi.org/10.1186/gm413DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3706894PMC
June 2014

jHeatmap: an interactive heatmap viewer for the web.

Bioinformatics 2014 Jun 23;30(12):1757-8. Epub 2014 Feb 23.

Research Unit on Biomedical Informatics, Department of Experimental and Health Sciences, Universitat Pompeu Fabra, Dr. Aiguader 88, Barcelona, Spain and Institució Catalana de Recerca i Estudis Avançats (ICREA), Passeig Lluís Companys, 23, Barcelona, SpainResearch Unit on Biomedical Informatics, Department of Experimental and Health Sciences, Universitat Pompeu Fabra, Dr. Aiguader 88, Barcelona, Spain and Institució Catalana de Recerca i Estudis Avançats (ICREA), Passeig Lluís Companys, 23, Barcelona, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btu094DOI Listing
June 2014

IntOGen-mutations identifies cancer drivers across tumor types.

Nat Methods 2013 Nov 15;10(11):1081-2. Epub 2013 Sep 15.

Research Unit on Biomedical Informatics, Department of Experimental and Health Sciences, Pompeu Fabra University, Barcelona, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nmeth.2642DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5758042PMC
November 2013

Automated Patent Categorization and Guided Patent Search using IPC as Inspired by MeSH and PubMed.

J Biomed Semantics 2013 Apr 15;4 Suppl 1:S3. Epub 2013 Apr 15.

TU Dresden, BIOTEC, Tatzberg 47/49, 01307 Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-4-S1-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3632996PMC
April 2013

Protein interactions in 3D: from interface evolution to drug discovery.

J Struct Biol 2012 Sep 1;179(3):347-58. Epub 2012 May 1.

Biotechnology Center, Technische Universität Dresden, Tatzberg 47-51, 01307 Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jsb.2012.04.009DOI Listing
September 2012

Drug repositioning through incomplete bi-cliques in an integrated drug-target-disease network.

Integr Biol (Camb) 2012 Jul 26;4(7):778-88. Epub 2012 Apr 26.

BIOTEC, TU Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1039/c2ib00154cDOI Listing
July 2012

Extending ontologies by finding siblings using set expansion techniques.

Bioinformatics 2012 Jun;28(12):i292-300

Biotechnology Center (BIOTEC), Technische Universität Dresden, 01062 Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/bts215DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3371847PMC
June 2012

Cross-sectional investigation of correlation between hepatic steatosis and IVIM perfusion on MR imaging.

Magn Reson Imaging 2012 May 27;30(4):572-8. Epub 2012 Jan 27.

Department of Radiology, Division of Emergency and Abdominal Radiology, University of Kentucky, Lexington, KY 40536-0293, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.mri.2011.12.013DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3327769PMC
May 2012

A Maximum-Entropy approach for accurate document annotation in the biomedical domain.

J Biomed Semantics 2012 Apr 24;3 Suppl 1:S2. Epub 2012 Apr 24.

Biotechnology Center (BIOTEC), Technische Universität Dresden, 01307 Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-3-S1-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3337257PMC
April 2012

Cardiac motion in diffusion-weighted MRI of the liver: artifact and a method of correction.

J Magn Reson Imaging 2012 Feb 29;35(2):318-27. Epub 2011 Sep 29.

Department of Radiology, University of California San Diego, San Diego, CA 92103-8226, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/jmri.22816DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3252483PMC
February 2012

Robustness of fat quantification using chemical shift imaging.

Magn Reson Imaging 2012 Feb 3;30(2):151-7. Epub 2011 Nov 3.

Department of Radiology, University of California San Diego, San Diego, CA 92103–8226, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.mri.2011.09.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3254829PMC
February 2012

SVGMap: configurable image browser for experimental data.

Bioinformatics 2012 Jan 27;28(1):119-20. Epub 2011 Oct 27.

Department of Experimental and Health Sciences, Research Unit on Biomedical Informatics (GRIB), Universitat Pompeu Fabra-IMIM, Dr Aiguader 88, Barcelona, Spain.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btr581DOI Listing
January 2012

The GNAT library for local and remote gene mention normalization.

Bioinformatics 2011 Oct 3;27(19):2769-71. Epub 2011 Aug 3.

Pharma Research and Early Development, Hoffmann-La Roche Inc., Nutley, NJ 07110, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btr455DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3179658PMC
October 2011

RP101 (brivudine) binds to heat shock protein HSP27 (HSPB1) and enhances survival in animals and pancreatic cancer patients.

J Cancer Res Clin Oncol 2011 Sep 22;137(9):1349-61. Epub 2011 Jul 22.

RESprotect, Fiedlerstr. 34, 01307, Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00432-011-1005-1DOI Listing
September 2011

Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction.

Bioinformatics 2011 Aug 2;27(15):2083-8. Epub 2011 Jun 2.

Systems Biology Division, Zhejiang-California International NanoSystems Institute, Zhejiang University, 310029 Hangzhou, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btr331DOI Listing
August 2011

In vivo characterization of the liver fat ¹H MR spectrum.

NMR Biomed 2011 Aug 12;24(7):784-90. Epub 2010 Dec 12.

Department of Radiology, University of California, San Diego, CA 92103-8749, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/nbm.1622DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3860876PMC
August 2011

Old friends in new guise: repositioning of known drugs with structural bioinformatics.

Brief Bioinform 2011 Jul 26;12(4):312-26. Epub 2011 Mar 26.

Bioinformatics Group, BIOTEC of TU Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bib/bbr011DOI Listing
July 2011

MetaDBSite: a meta approach to improve protein DNA-binding sites prediction.

BMC Syst Biol 2011 Jun 20;5 Suppl 1:S7. Epub 2011 Jun 20.

Systems Biology Division, Zhejiang-California International NanoSystems Institute, Zhejiang University, Kaixuan Road 268, Hangzhou, China.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1752-0509-5-S1-S7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3121123PMC
June 2011

Computational polypharmacology with text mining and ontologies.

Curr Pharm Biotechnol 2011 Mar;12(3):449-57

Biotechnology Center of Technische Universität Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2174/138920111794480624DOI Listing
March 2011

A knowledge-based search engine to navigate the information thicket of nanotoxicology.

Regul Toxicol Pharmacol 2011 Feb 17;59(1):47-52. Epub 2010 Sep 17.

Scientific Consultancy - Animal Welfare, Hallstattfeld 16, 85579 Neubiberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.yrtph.2010.09.005DOI Listing
February 2011

Structural modeling of histone methyltransferase complex Set1C from Saccharomyces cerevisiae using constraint-based docking.

Proteomics 2010 Dec;10(23):4186-95

Biotechnology Center (BIOTEC), Technische Universität Dresden, Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/pmic.201000283DOI Listing
December 2010

Gadoxetate disodium-enhanced MRI of the liver: part 2, protocol optimization and lesion appearance in the cirrhotic liver.

AJR Am J Roentgenol 2010 Jul;195(1):29-41

Department of Radiology, University of California, San Diego, 92103, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2214/AJR.10.4538DOI Listing
July 2010

Semi-automated ontology generation within OBO-Edit.

Bioinformatics 2010 Jun;26(12):i88-96

Biotechnology Center, Technische Universität Dresden, 01062 Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btq188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2881373PMC
June 2010

MeMotif: a database of linear motifs in alpha-helical transmembrane proteins.

Nucleic Acids Res 2010 Jan 12;38(Database issue):D181-9. Epub 2009 Nov 12.

Bioinformatics Department, Biotechnology Center, TU Dresden, Tatzberg 47/49, 01307 Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkp1042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808916PMC
January 2010

SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions.

Nucleic Acids Res 2010 Jan 24;38(Database issue):D237-43. Epub 2009 Nov 24.

Structural Bioinformatics Group, Institute of Physiology, Charité-University Medicine Berlin, Arnimallee 22, 14197 Berlin, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkp970DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808967PMC
January 2010

GoWeb: a semantic search engine for the life science web.

BMC Bioinformatics 2009 Oct 1;10 Suppl 10:S7. Epub 2009 Oct 1.

Biotechnology Center (BIOTEC), Technische Universität Dresden, 01062, Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-10-S10-S7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2755828PMC
October 2009

Lipofibromatous hamartoma of the median nerve in patients with macrodactyly: diagnosis and treatment of a rare disease causing carpal tunnel syndrome.

Arch Orthop Trauma Surg 2009 Sep 10;129(9):1219-24. Epub 2008 Jul 10.

Department of Plastic Surgery, Hand Surgery, Burn Unit, University Hospital, Aachen University of Technology, Pauwelsstr. 30, 52074, Aachen, Germany.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s00402-008-0695-6
Publisher Site
http://dx.doi.org/10.1007/s00402-008-0695-6DOI Listing
September 2009

Improved mutation tagging with gene identifiers applied to membrane protein stability prediction.

BMC Bioinformatics 2009 Aug 27;10 Suppl 8:S3. Epub 2009 Aug 27.

Biotechnology Center, Technische Universität Dresden, Tatzberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-10-S8-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745585PMC
August 2009

GoGene: gene annotation in the fast lane.

Nucleic Acids Res 2009 Jul 22;37(Web Server issue):W300-4. Epub 2009 May 22.

Biotechnology Center, Technische Universität Dresden, 01307 Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkp429DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2703922PMC
July 2009

Triangle network motifs predict complexes by complementing high-error interactomes with structural information.

BMC Bioinformatics 2009 Jun 27;10:196. Epub 2009 Jun 27.

Biotechnology Center (BIOTEC), Technische Universität Dresden, 01307 Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-10-196DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2714575PMC
June 2009

A roadmap of clustering algorithms: finding a match for a biomedical application.

Brief Bioinform 2009 May 24;10(3):297-314. Epub 2009 Feb 24.

Biotechnological Centre, Technische Universität Dresden, Germany.

View Article

Download full-text PDF

Source
https://academic.oup.com/bib/article-lookup/doi/10.1093/bib/
Publisher Site
http://dx.doi.org/10.1093/bib/bbn058DOI Listing
May 2009

Go3R - semantic Internet search engine for alternative methods to animal testing.

ALTEX 2009 ;26(1):17-31

Scientific Consultancy - Animal Welfare, Neubiberg/Munich, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.14573/altex.2009.1.17DOI Listing
May 2009

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy.

BMC Bioinformatics 2009 Jan 21;10:28. Epub 2009 Jan 21.

Biotechnology Center (BIOTEC), Technische Universität Dresden, 01062, Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-10-28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2663782PMC
January 2009

Gene mention normalization and interaction extraction with context models and sentence motifs.

Genome Biol 2008 1;9 Suppl 2:S14. Epub 2008 Sep 1.

Biotechnological Centre, Technische Universität Dresden, Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2008-9-s2-s14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2559985PMC
December 2008

Word Sense Disambiguation in biomedical ontologies with term co-occurrence analysis and document clustering.

Int J Data Min Bioinform 2008 ;2(3):193-215

Biotechnological Centre, Technischen Universität Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1504/ijdmb.2008.020522DOI Listing
December 2008

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?

Brief Bioinform 2008 Nov 6;9(6):466-78. Epub 2008 Dec 6.

Biotechnology Center, Technische Universität Dresden, Tatzberg 47-49, 01307 Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bib/bbn043DOI Listing
November 2008

Using protein binding site prediction to improve protein docking.

Gene 2008 Oct 14;422(1-2):14-21. Epub 2008 Jun 14.

Bioinformatics Group, Biotechnological Center, Technical University Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.gene.2008.06.014DOI Listing
October 2008

Inter-species normalization of gene mentions with GNAT.

Bioinformatics 2008 Aug;24(16):i126-132

Department of Computer Science and Engineering, Arizona State University, Tempe, AZ 85287, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btn299DOI Listing
August 2008

Unraveling protein networks with power graph analysis.

PLoS Comput Biol 2008 Jul 11;4(7):e1000108. Epub 2008 Jul 11.

Biotechnology Center, Technische Universität Dresden, Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1000108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2424176PMC
July 2008

Terminologies for text-mining; an experiment in the lipoprotein metabolism domain.

BMC Bioinformatics 2008 Apr 25;9 Suppl 4:S2. Epub 2008 Apr 25.

Biotechnology Center, Technische Universität Dresden, Dresden, D-01062, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-9-S4-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2367629PMC
April 2008

Clustering by common friends finds locally significant proteins mediating modules.

Bioinformatics 2007 May 21;23(9):1124-31. Epub 2007 Feb 21.

Biotechnological Centre, Technische Universität Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btm064DOI Listing
May 2007

Using structural motif descriptors for sequence-based binding site prediction.

BMC Bioinformatics 2007 May 22;8 Suppl 4:S5. Epub 2007 May 22.

Biotechnological Center, TU Dresden, Tatzberg 47-51, Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-8-S4-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1892084PMC
May 2007

LIGSITEcsc: predicting ligand binding sites using the Connolly surface and degree of conservation.

BMC Struct Biol 2006 Sep 24;6:19. Epub 2006 Sep 24.

Bioinformatics Group, Biotechnological Center, Technical University Dresden, Germany.

View Article

Download full-text PDF

Source
http://bmcstructbiol.biomedcentral.com/articles/10.1186/1472
Publisher Site
http://dx.doi.org/10.1186/1472-6807-6-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1601958PMC
September 2006

The many faces of protein-protein interactions: A compendium of interface geometry.

PLoS Comput Biol 2006 Sep 31;2(9):e124. Epub 2006 Jul 31.

Bioinformatics Group, Biotechnological Centre, Technische Universität Dresden, Dresden, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.0020124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1584320PMC
September 2006