Publications by authors named "Michael Krauthammer"

72Publications

AutoDiscern: rating the quality of online health information with hierarchical encoder attention-based neural networks.

BMC Med Inform Decis Mak 2020 06 9;20(1):104. Epub 2020 Jun 9.

Department of Quantitative Biomedicine, UZH, Schmelzbergstrasse 26, Zurich, Switzerland.

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http://dx.doi.org/10.1186/s12911-020-01131-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7285491PMC
June 2020

Lost in Anonymization - A Data Anonymization Reference Classification Merging Legal and Technical Considerations.

J Law Med Ethics 2020 03;48(1):228-231

Kerstin N. Vokinger, M.D., J.D., Ph.D., LL.M., is an Assistant Professor at the University of Zurich, Switzerland. Daniel J. Stekhoven, Ph.D., is at NEXUS, Personalized Health Technologies, Swiss Federal Institute of Technology, (ETH) in Zu-rich, Switzerland. Michael Krauthammer, M.D., Ph.D., is Professor for Medical Informatics at the University of Zurich, Switzerland.

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http://dx.doi.org/10.1177/1073110520917025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7411532PMC
March 2020

Neural networks versus Logistic regression for 30 days all-cause readmission prediction.

Sci Rep 2019 06 26;9(1):9277. Epub 2019 Jun 26.

Chair of Medical Informatics, Department of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland.

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http://dx.doi.org/10.1038/s41598-019-45685-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6595068PMC
June 2019

Unraveling the etiology of primary malignant melanoma of the esophagus.

J Thorac Dis 2018 Apr;10(Suppl 9):S1074-S1075

Department of Pathology, Yale University School of Medicine, New Haven, CT, USA.

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http://dx.doi.org/10.21037/jtd.2018.03.91DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5949403PMC
April 2018

PySeqLab: an open source Python package for sequence labeling and segmentation.

Bioinformatics 2017 Nov;33(21):3497-3499

Department of Pathology, Yale School of Medicine, New Haven, CT 06511, USA.

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http://dx.doi.org/10.1093/bioinformatics/btx451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5872256PMC
November 2017

A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling.

AMIA Jt Summits Transl Sci Proc 2017 26;2017:295-301. Epub 2017 Jul 26.

Yale University School of Medicine New Haven, CT.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543375PMC
July 2017

Controlling testing volume for respiratory viruses using machine learning and text mining.

AMIA Annu Symp Proc 2016 10;2016:1910-1919. Epub 2017 Feb 10.

Yale School of Medicine, New Haven, CT.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5333257PMC
August 2017

Toward automated assessment of health Web page quality using the DISCERN instrument.

J Am Med Inform Assoc 2017 May;24(3):481-487

Program for Computational Biology and Bioinformatics, Department of Pathology, Yale University School of Medicine, New Haven, CT, USA.

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http://dx.doi.org/10.1093/jamia/ocw140DOI Listing
May 2017

RASopathy Gene Mutations in Melanoma.

J Invest Dermatol 2016 09 25;136(9):1755-1759. Epub 2016 May 25.

Department of Pathology, Yale University School of Medicine, New Haven, Connecticut, USA; Program in Computational Biology and Bioinformatics, Yale University School of Medicine, New Haven, Connecticut, USA.

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http://dx.doi.org/10.1016/j.jid.2016.05.095DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4992636PMC
September 2016

Integrated analysis of multidimensional omics data on cutaneous melanoma prognosis.

Genomics 2016 06 30;107(6):223-30. Epub 2016 Apr 30.

VA Cooperative Studies Program Coordinating Center, West Haven, CT 06516, USA; Department of Biostatistics, Yale University, New Haven, CT 06520, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ygeno.2016.04.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4893887PMC
June 2016

Global copy number profiling of cancer genomes.

Bioinformatics 2016 03 16;32(6):926-8. Epub 2015 Nov 16.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, Department of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1093/bioinformatics/btv676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907391PMC
March 2016

Mutadelic: mutation analysis using description logic inferencing capabilities.

Bioinformatics 2015 Dec 12;31(23):3742-7. Epub 2015 Aug 12.

Program in Computational Biology and Bioinformatics and Department of Pathology, Yale University School of Medicine, New Haven, CT, USA.

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http://dx.doi.org/10.1093/bioinformatics/btv467DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6078193PMC
December 2015

Modulation of Sox10, HIF-1α, Survivin, and YAP by Minocycline in the Treatment of Neurodevelopmental Handicaps following Hypoxic Insult.

Am J Pathol 2015 Sep 22;185(9):2364-78. Epub 2015 Jul 22.

Department of Pathology, Yale University School of Medicine, New Haven, Connecticut. Electronic address:

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http://dx.doi.org/10.1016/j.ajpath.2015.05.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5801488PMC
September 2015

Computational analysis in cancer exome sequencing.

Methods Mol Biol 2014 ;1176:219-27

Department of Pathology, Yale University School of Medicine, New Haven, CT, USA.

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http://dx.doi.org/10.1007/978-1-4939-0992-6_18DOI Listing
March 2015

Rare SF3B1 R625 mutations in cutaneous melanoma.

Melanoma Res 2014 Aug;24(4):332-4

aDepartment of Molecular Biophysics and Biochemistry bW.M. Keck Foundation Biotechnology Resource Laboratory cDepartment of Pathology dDepartment of Dermatology, Yale University, School of Medicine, New Haven, Connecticut, USA.

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http://dx.doi.org/10.1097/CMR.0000000000000071DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4101881PMC
August 2014

Mining images in biomedical publications: Detection and analysis of gel diagrams.

J Biomed Semantics 2014 Feb 25;5(1):10. Epub 2014 Feb 25.

Department of Humanities, Social and Political Sciences, ETH Zurich, Zürich, Switzerland.

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http://dx.doi.org/10.1186/2041-1480-5-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4190668PMC
February 2014

Next Generation Cancer Data Discovery, Access, and Integration Using Prizms and Nanopublications.

Data Integr Life Sci 2013 Jul;7970:105-112

Department of Computer Science, Rensselaer Polytechnic Institute, 110 8th Street Troy, NY 12180, USA; Department of Cognitive Science, Rensselaer Polytechnic Institute, 110 8th Street Troy, NY 12180, USA, http://tw.rpi.edu.

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http://dx.doi.org/10.1007/978-3-642-39437-9_9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5019567PMC
July 2013

Adjusting for background mutation frequency biases improves the identification of cancer driver genes.

IEEE Trans Nanobioscience 2013 Sep 16;12(3):150-7. Epub 2013 May 16.

Department of Pathology, Yale University School of Medicine, New Haven, CT 06511, USA.

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http://dx.doi.org/10.1109/TNB.2013.2263391DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3989533PMC
September 2013

Complementary ensemble clustering of biomedical data.

J Biomed Inform 2013 Jun 27;46(3):436-43. Epub 2013 Feb 27.

Yale University School of Medicine, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1016/j.jbi.2013.02.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4007219PMC
June 2013

Finding and accessing diagrams in biomedical publications.

AMIA Annu Symp Proc 2012 3;2012:468-74. Epub 2012 Nov 3.

Department of Pathology, Yale University School of Medicine, New Haven, CT, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3540439PMC
July 2013

Type II p21-activated kinases (PAKs) are regulated by an autoinhibitory pseudosubstrate.

Proc Natl Acad Sci U S A 2012 Oct 17;109(40):16107-12. Epub 2012 Sep 17.

Department of Pharmacology, Yale University School of Medicine, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1073/pnas.1214447109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3479536PMC
October 2012

Enhancing Clustering by Exploiting Complementary Data Modalities in the Medical Domain.

IFIP Adv Inf Commun Technol 2012 Sep;381:357-367

Department of Pathology, Yale University, New Haven, CT, USA.

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http://dx.doi.org/10.1007/978-3-642-33409-2_37DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5823526PMC
September 2012

Exploring the use of social media to measure journal article impact.

AMIA Annu Symp Proc 2011 22;2011:374-81. Epub 2011 Oct 22.

Department of Pathology, Yale University School of Medicine, New Haven, CT, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3243242PMC
February 2013

MU2A--reconciling the genome and transcriptome to determine the effects of base substitutions.

Bioinformatics 2011 Feb 12;27(3):416-8. Epub 2010 Dec 12.

Department of Biological and Biomedical Sciences, Interdepartmental Program in Computational Biology and Bioinformatics, Yale University School of Medicine, 310 Cedar Street, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1093/bioinformatics/btq658DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3031033PMC
February 2011

A new pivoting and iterative text detection algorithm for biomedical images.

J Biomed Inform 2010 Dec 29;43(6):924-31. Epub 2010 Sep 29.

Oak Ridge National Laboratory, One Bethel Valley Road, Oak Ridge, TN 37831, USA.

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http://dx.doi.org/10.1016/j.jbi.2010.09.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3265968PMC
December 2010

Genome-wide methylation and expression profiling identifies promoter characteristics affecting demethylation-induced gene up-regulation in melanoma.

BMC Med Genomics 2010 Feb 9;3. Epub 2010 Feb 9.

Interdepartmental Program in Computational Biology & Bioinformatics, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1186/1755-8794-3-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2843643PMC
February 2010

Melanoma prognostic model using tissue microarrays and genetic algorithms.

J Clin Oncol 2009 Dec 2;27(34):5772-80. Epub 2009 Nov 2.

Department of Pathology, Yale University School of Medicine, New Haven, CT 06520-8023, USA.

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http://dx.doi.org/10.1200/JCO.2009.22.8239DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2792999PMC
December 2009

Semantic web data warehousing for caGrid.

BMC Bioinformatics 2009 Oct 1;10 Suppl 10:S2. Epub 2009 Oct 1.

Department of Pathology, Yale University School of Medicine, New Haven, CT, USA.

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http://dx.doi.org/10.1186/1471-2105-10-S10-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2755823PMC
October 2009

Structural similarity assessment for drug sensitivity prediction in cancer.

BMC Bioinformatics 2009 Sep 17;10 Suppl 9:S17. Epub 2009 Sep 17.

Department of Pathology, Yale University School of Medicine, New Haven, CT, USA.

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http://dx.doi.org/10.1186/1471-2105-10-S9-S17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745688PMC
September 2009

Genome-wide screen of promoter methylation identifies novel markers in melanoma.

Genome Res 2009 Aug 2;19(8):1462-70. Epub 2009 Jun 2.

Department of Genetics, Yale University School of Medicine, New Haven, Connecticut 06520-8059, USA.

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http://dx.doi.org/10.1101/gr.091447.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2720187PMC
August 2009

Using semantic web technologies to annotate and align microarray designs.

Cancer Inform 2009 13;8:65-73. Epub 2009 May 13.

Department of Pathology, Yale University School of Medicine, New Haven, CT.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4042255PMC
http://dx.doi.org/10.4137/cin.s2335DOI Listing
June 2014

Enriching PubMed related article search with sentence level co-citations.

AMIA Annu Symp Proc 2009 Nov 14;2009:650-4. Epub 2009 Nov 14.

Department of Pathology, Yale University, New Haven, CT 06520, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2815371PMC
November 2009

Embedding the guideline elements model in web ontology language.

AMIA Annu Symp Proc 2009 Nov 14;2009:645-9. Epub 2009 Nov 14.

Deparment of Pathology, Yale School of Medicine, Yale University, New Haven, CT 06510, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2815420PMC
November 2009

Exploring the use of image text for biomedical literature retrieval.

AMIA Annu Symp Proc 2008 Nov 6:1186. Epub 2008 Nov 6.

Department of Computer Science, Yale University, New Haven, CT, USA.

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November 2008

MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment.

Genome Res 2008 Oct 2;18(10):1652-9. Epub 2008 Sep 2.

Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, Connecticut 06520, USA.

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http://dx.doi.org/10.1101/gr.080721.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2556264PMC
October 2008

Mapping terms to UMLS concepts of the same semantic type.

AMIA Annu Symp Proc 2007 Oct 11:1136. Epub 2007 Oct 11.

Department of Pathology, Yale University, New Haven, CT, USA.

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October 2007

Yale Image Finder (YIF): a new search engine for retrieving biomedical images.

Bioinformatics 2008 Sep 9;24(17):1968-70. Epub 2008 Jul 9.

Department of Computer Science, Yale University, 51 Prospect Street, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1093/bioinformatics/btn340DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2732221PMC
September 2008

Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics.

Bioinformatics 2007 Nov 7;23(22):3073-9. Epub 2007 Oct 7.

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.

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http://dx.doi.org/10.1093/bioinformatics/btm452DOI Listing
November 2007

The BiolAD-DB system : an informatics system for clinical and genetic data.

Mol Diagn Ther 2007 ;11(1):15-9

Laboratory of the Biology of Addictive Diseases, The Rockefeller University, New York, NY 10021, USA.

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http://dx.doi.org/10.1007/BF03256219DOI Listing
April 2007

Shallow semantic parsing of randomized controlled trial reports.

AMIA Annu Symp Proc 2006 :604-8

Center for Medical Informatics, Yale University School of Medicine, New Haven, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1839261PMC
September 2007

Genomewide linkage scan for nicotine dependence: identification of a chromosome 5 risk locus.

Biol Psychiatry 2007 Jan 1;61(1):119-26. Epub 2006 Nov 1.

Department of Psychiatry, Yale University School of Medicine, New Haven, Connecticut 06516, USA.

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http://dx.doi.org/10.1016/j.biopsych.2006.08.023DOI Listing
January 2007

Towards semantic role labeling & IE in the medical literature.

AMIA Annu Symp Proc 2005 :410-4

Center for Medical Informatics, Yale University School of Medicine, New Haven, CT, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1560806PMC
February 2007

Term identification in the biomedical literature.

J Biomed Inform 2004 Dec;37(6):512-26

Department of Biomedical Informatics, Columbia Genome Center, Columbia University, New York, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S153204640400082
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http://dx.doi.org/10.1016/j.jbi.2004.08.004DOI Listing
December 2004

Molecular triangulation: bridging linkage and molecular-network information for identifying candidate genes in Alzheimer's disease.

Proc Natl Acad Sci U S A 2004 Oct 7;101(42):15148-53. Epub 2004 Oct 7.

Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1073/pnas.0404315101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC523448PMC
October 2004

Probabilistic inference of molecular networks from noisy data sources.

Bioinformatics 2004 May 10;20(8):1205-13. Epub 2004 Feb 10.

Department of Medical Informatics, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1093/bioinformatics/bth061DOI Listing
May 2004

A native XML database design for clinical document research.

AMIA Annu Symp Proc 2003 :883

Department of Medical Informatics, Columbia University, New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1479907PMC
December 2004

Representing nested semantic information in a linear string of text using XML.

Proc AMIA Symp 2002 :405-9

Department of Medical Informatics, Columbia University, New York, NY, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2244450PMC
April 2003

Of truth and pathways: chasing bits of information through myriads of articles.

Bioinformatics 2002 ;18 Suppl 1:S249-57

Department of Medical Informatics, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1093/bioinformatics/18.suppl_1.s249DOI Listing
October 2004