Michael Knapp

Michael Knapp

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Structural insights into the formation and voltage degradation of lithium- and manganese-rich layered oxides.

Nat Commun 2019 Nov 26;10(1):5365. Epub 2019 Nov 26.

Institute for Applied Materials (IAM), Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein-Leopoldshafen, Germany.

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http://dx.doi.org/10.1038/s41467-019-13240-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6879514PMC
November 2019

Protein Flexibility of the α-Ketoglutarate-Dependent Oxygenase Factor-Inhibiting HIF-1: Implications for Substrate Binding, Catalysis, and Regulation.

Biochemistry 2019 Oct 20;58(39):4047-4057. Epub 2019 Sep 20.

Department of Chemistry , University of Massachusetts , Amherst , Massachusetts 01003 , United States.

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http://dx.doi.org/10.1021/acs.biochem.9b00619DOI Listing
October 2019

Complete genomes of two extinct New Zealand passerines show responses to climate fluctuations but no evidence for genomic erosion prior to extinction.

Biol Lett 2019 09 4;15(9):20190491. Epub 2019 Sep 4.

Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, Stockholm 10405, Sweden.

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http://dx.doi.org/10.1098/rsbl.2019.0491DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6769136PMC
September 2019

Antioxidant capacity and anoxia tolerance in embryos.

J Exp Biol 2019 Jun 24;222(Pt 12). Epub 2019 Jun 24.

Department of Biology, Portland State University, PO Box 751, Portland, OR 97207, USA

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http://dx.doi.org/10.1242/jeb.204347DOI Listing
June 2019

p63 establishes epithelial enhancers at critical craniofacial development genes.

Sci Adv 2019 05 1;5(5):eaaw0946. Epub 2019 May 1.

Departments of Cell and Developmental Biology and Epigenetics Institute, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1126/sciadv.aaw0946DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6494499PMC
May 2019

Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?

Genes (Basel) 2019 03 1;10(3). Epub 2019 Mar 1.

Department of Anatomy, University of Otago, 270 Great King Street, Dunedin, Otago 9016, New Zealand.

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http://dx.doi.org/10.3390/genes10030192DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6470983PMC
March 2019

In Operando Synchrotron Diffraction and in Operando X-ray Absorption Spectroscopy Investigations of Orthorhombic VO Nanowires as Cathode Materials for Mg-Ion Batteries.

J Am Chem Soc 2019 Feb 31;141(6):2305-2315. Epub 2019 Jan 31.

Institute for Applied Materials (IAM) , Karlsruhe Institute of Technology (KIT) , Hermann-von-Helmholtz-Platz 1 , D-76344 Eggenstein-Leopoldshafen , Germany.

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http://dx.doi.org/10.1021/jacs.8b08998DOI Listing
February 2019

Observation of electrochemically active Fe/Fe in LiCoFeMnO by in situ Mössbauer spectroscopy and X-ray absorption spectroscopy.

Phys Chem Chem Phys 2018 Dec;21(1):89-95

Institute for Applied Materials (IAM), Karlsruhe Institute of Technology (KIT), 76344 Eggenstein-Leopoldshafen, Germany.

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http://xlink.rsc.org/?DOI=C8CP06177G
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http://dx.doi.org/10.1039/c8cp06177gDOI Listing
December 2018

O Activation by Nonheme Fe α-Ketoglutarate-Dependent Enzyme Variants: Elucidating the Role of the Facial Triad Carboxylate in FIH.

J Am Chem Soc 2018 09 10;140(37):11777-11783. Epub 2018 Sep 10.

Department of Chemistry , Stanford University , Stanford , California 94305 , United States.

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http://dx.doi.org/10.1021/jacs.8b07277DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6146021PMC
September 2018

Energy research with neutrons (ErwiN) and installation of a fast neutron powder diffraction option at the MLZ, Germany.

J Appl Crystallogr 2018 Jun 13;51(Pt 3):591-595. Epub 2018 Apr 13.

Heinz Maier-Leibnitz Zentrum (MLZ), Technische Universität München, Lichtenbergstrasse 1, 85748, Garching bei München, Germany.

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http://dx.doi.org/10.1107/S1600576718004223DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5988003PMC
June 2018

Investigations on the role of a solvent tunnel in the α-ketoglutarate dependent oxygenase factor inhibiting HIF (FIH).

J Inorg Biochem 2018 01 7;178:63-69. Epub 2017 Oct 7.

Department of Chemistry, University of Massachusetts, Amherst, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jinorgbio.2017.10.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5726895PMC
January 2018

Role of the LF-SINE-Derived Distal Enhancer in Patients with Classic Bladder Exstrophy.

J Pediatr Genet 2017 Sep 21;6(3):169-173. Epub 2017 Apr 21.

Department of Clinical Chemistry and Clinical Pharmacology, University of Bonn, Bonn, Germany.

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http://dx.doi.org/10.1055/s-0037-1602387DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5548531PMC
September 2017

The facial triad in the α-ketoglutarate dependent oxygenase FIH: A role for sterics in linking substrate binding to O activation.

J Inorg Biochem 2017 01 17;166:26-33. Epub 2016 Oct 17.

Department of Chemistry, University of Massachusetts, Amherst, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jinorgbio.2016.10.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5161613PMC
January 2017

Building strong relationships between conservation genetics and primary industry leads to mutually beneficial genomic advances.

Mol Ecol 2016 11 13;25(21):5267-5281. Epub 2016 Oct 13.

School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch, 8140, New Zealand.

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http://dx.doi.org/10.1111/mec.13837DOI Listing
November 2016

Genome-wide association studies in oesophageal adenocarcinoma and Barrett's oesophagus: a large-scale meta-analysis.

Lancet Oncol 2016 Oct 12;17(10):1363-1373. Epub 2016 Aug 12.

Institute of Human Genetics, and Department of Genomics, Life & Brain Center, University of Bonn, Bonn, Germany.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5052458PMC
http://dx.doi.org/10.1016/S1470-2045(16)30240-6DOI Listing
October 2016

Microwave synthesis of high-quality and uniform 4 nm ZnFeO nanocrystals for application in energy storage and nanomagnetics.

Beilstein J Nanotechnol 2016 27;7:1350-1360. Epub 2016 Sep 27.

Battery and Electrochemistry Laboratory, Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany.

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http://www.beilstein-journals.org/bjnano/content/7/1/126
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http://dx.doi.org/10.3762/bjnano.7.126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5082472PMC
September 2016

Layered-to-Tunnel Structure Transformation and Oxygen Redox Chemistry in LiRhO2 upon Li Extraction and Insertion.

Inorg Chem 2016 Jul 1;55(14):7079-89. Epub 2016 Jul 1.

Karlsruhe Institute of Technology (KIT) , Institute for Applied Materials (IAM), Hermann-von- Helmholtz-Platz 1, D-76344 Eggenstein-Leopoldshafen, Germany.

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http://dx.doi.org/10.1021/acs.inorgchem.6b01008DOI Listing
July 2016

Comprehensive epidemiological and genotype-phenotype analyses in a large European sample with idiopathic achalasia.

Eur J Gastroenterol Hepatol 2016 Jun;28(6):689-95

Institutes for aHuman Genetics bMedical Biometry, Informatics, and Epidemiology Departments of cGenomics, Life & Brain Center dInternal Medicine I eGeneral, Visceral, Thoracic and Vascular Surgery, University of Bonn, Bonn fDepartment of Medicine B, University Hospital Münster, Münster gDepartment of Gastroenterology, Hepatology and Infectious Diseases, Otto-von-Guericke University Hospital, Magdeburg hDepartment of Visceral, Transplant, Thoracic and Vascular Surgery, University Hospital of Leipzig, Leipzig iDepartment of General, Visceral and Transplant Surgery, University Medical Center, University of Mainz, Mainz jDepartment of Gastroenterology, German Diagnostic Clinic, Wiesbaden kInstitute of Pathology, Klinikum Bayreuth, Bayreuth lDepartment of General, Visceral, Vascular and Pediatric Surgery, University of Würzburg, Würzburg mDepartment of General and Abdominal Surgery, Protestant Hospital Castrop-Rauxel, Castrop-Rauxel, Germany nTranslational Research Center for Gastrointestinal Disorders, Catholic University of Leuven, Leuven, Belgium oCenter of Gastroenterology, Klinik Hirslanden, Zürich, Switzerland.

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http://dx.doi.org/10.1097/MEG.0000000000000602DOI Listing
June 2016

Substrate Promotes Productive Gas Binding in the α-Ketoglutarate-Dependent Oxygenase FIH.

Biochemistry 2016 Jan 5;55(2):277-86. Epub 2016 Jan 5.

Department of Chemistry, University of Massachusetts , Amherst, Massachusetts 01003, United States.

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http://dx.doi.org/10.1021/acs.biochem.5b01003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4793777PMC
January 2016

Increased Turnover at Limiting O2 Concentrations by the Thr(387) → Ala Variant of HIF-Prolyl Hydroxylase PHD2.

Biochemistry 2015 May 28;54(18):2851-7. Epub 2015 Apr 28.

Department of Chemistry, University of Massachusetts, Amherst, Massachusetts 01003, United States.

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http://dx.doi.org/10.1021/bi501540cDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4939847PMC
May 2015

Re-inventing ancient human DNA.

Investig Genet 2015 1;6. Epub 2015 May 1.

Department of Mathematics and Natural Sciences, Evolutionary and Adaptive Genomics, Institute for Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Str. 24-25, 14476 Potsdam, Germany.

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http://dx.doi.org/10.1186/s13323-015-0020-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416249PMC
May 2015

Nanoscale spinel LiFeTiO4 for intercalation pseudocapacitive Li(+) storage.

Phys Chem Chem Phys 2015 Jan 28;17(2):1482-8. Epub 2014 Nov 28.

Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT), P.O. Box 3640, 76021 Karlsruhe, Germany.

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http://dx.doi.org/10.1039/c4cp04655bDOI Listing
January 2015

The rate-limiting step of O2 activation in the α-ketoglutarate oxygenase factor inhibiting hypoxia inducible factor.

Biochemistry 2014 Dec 16;53(51):8077-84. Epub 2014 Dec 16.

Department of Chemistry, University of Massachusetts , Amherst, Massachusetts 01003, United States.

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http://dx.doi.org/10.1021/bi501246vDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4283935PMC
December 2014

Species radiation of carabid beetles (broscini: mecodema) in new zealand.

PLoS One 2014 23;9(1):e86185. Epub 2014 Jan 23.

Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0086185PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3900486PMC
November 2014

Substrate positioning by Gln(239) stimulates turnover in factor inhibiting HIF, an αKG-dependent hydroxylase.

Biochemistry 2014 Sep 29;53(36):5750-8. Epub 2014 Aug 29.

Department of Chemistry, University of Massachusetts at Amherst , Amherst, Massachusetts 01003, United States.

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http://dx.doi.org/10.1021/bi500703sDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165446PMC
September 2014

Intercalation-driven reversible control of magnetism in bulk ferromagnets.

Adv Mater 2014 Jul 3;26(27):4639-44. Epub 2014 Mar 3.

Institute for Nanotechnology, Karlsruhe Institute of Technology (KIT), D-76344, Eggenstein-Leopoldshafen, Germany.

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http://dx.doi.org/10.1002/adma.201305932DOI Listing
July 2014

Nonsyndromic cleft lip with or without cleft palate: Increased burden of rare variants within Gremlin-1, a component of the bone morphogenetic protein 4 pathway.

Birth Defects Res A Clin Mol Teratol 2014 Jun 7;100(6):493-8. Epub 2014 Apr 7.

Institute of Human Genetics, University of Bonn, Bonn, Germany; Klinikverbund St. Antonius und St. Josef, Wuppertal, Germany; Department of Genomics, Life and Brain Center, University of Bonn, Bonn, Germany.

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http://dx.doi.org/10.1002/bdra.23244DOI Listing
June 2014

Environmental DNA for wildlife biology and biodiversity monitoring.

Trends Ecol Evol 2014 Jun 10;29(6):358-67. Epub 2014 May 10.

Molecular Ecology and Fisheries Genetics Laboratory, School of Biological Sciences, Deiniol Road, Bangor University, Bangor LL57 2UW, UK. Electronic address:

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http://www.cell.com/trends/ecology-evolution/pdf/S0169-5347(
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http://linkinghub.elsevier.com/retrieve/pii/S016953471400086
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http://dx.doi.org/10.1016/j.tree.2014.04.003DOI Listing
June 2014

Oxygen sensing strategies in mammals and bacteria.

J Inorg Biochem 2014 Apr 3;133:63-72. Epub 2014 Jan 3.

Department of Chemistry, University of Massachusetts, Amherst, MA 01003, United States. Electronic address:

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http://dx.doi.org/10.1016/j.jinorgbio.2013.12.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4097052PMC
April 2014

Preface: gas and redox sensors special issue.

Authors:
Michael J Knapp

J Inorg Biochem 2014 Apr;133:57

Department of Chemistry, University of Massachusetts, Amherst, Amherst, MA 01003, USA.

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http://dx.doi.org/10.1016/j.jinorgbio.2014.02.008DOI Listing
April 2014

Variation in the calpain-10 gene is not associated with gestational diabetes mellitus.

Scand J Clin Lab Invest 2014 Jan 22;74(1):59-66. Epub 2013 Nov 22.

St. Vincenz-Hospital Limburg , Germany.

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http://dx.doi.org/10.3109/00365513.2013.857427DOI Listing
January 2014

Evaluating eight newly identified susceptibility loci for nonsyndromic cleft lip with or without cleft palate in a Mesoamerican population.

Birth Defects Res A Clin Mol Teratol 2014 Jan 31;100(1):43-7. Epub 2013 Dec 31.

Institute of Human Genetics, University of Bonn, Bonn, Germany; Department of Genomics, Life and Brain Center, University of Bonn, Bonn, Germany.

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http://dx.doi.org/10.1002/bdra.23209DOI Listing
January 2014

Analysis of susceptibility loci for nonsyndromic orofacial clefting in a European trio sample.

Am J Med Genet A 2013 Oct 16;161A(10):2545-9. Epub 2013 Aug 16.

Institute of Human Genetics, University of Bonn, Bonn, Germany; Department of Genomics, Life and Brain Center, University of Bonn, Bonn, Germany.

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http://dx.doi.org/10.1002/ajmg.a.36141DOI Listing
October 2013

Substrate preference of the HIF-prolyl hydroxylase-2 (PHD2) and substrate-induced conformational change.

J Inorg Biochem 2013 Sep 21;126:55-60. Epub 2013 May 21.

Department of Chemistry, University of Massachusetts, Amherst, MA 01003, USA.

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http://dx.doi.org/10.1016/j.jinorgbio.2013.05.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4046702PMC
September 2013

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.

Proc Natl Acad Sci U S A 2013 Sep 9;110(39):15758-63. Epub 2013 Sep 9.

Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, 04103 Leipzig, Germany.

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http://dx.doi.org/10.1073/pnas.1314445110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3785785PMC
September 2013

Spectroscopic studies of the mononuclear non-heme Fe(II) enzyme FIH: second-sphere contributions to reactivity.

J Am Chem Soc 2013 Jul 20;135(26):9665-74. Epub 2013 Jun 20.

Department of Chemistry, Stanford University, Stanford, California 94305, USA.

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http://dx.doi.org/10.1021/ja312571mDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3712650PMC
July 2013

Inverse solvent isotope effects arising from substrate triggering in the factor inhibiting hypoxia inducible factor.

Biochemistry 2013 Mar 18;52(9):1594-602. Epub 2013 Feb 18.

Department of Chemistry, University of Massachusetts, Amherst, Massachusetts 01003, USA.

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http://dx.doi.org/10.1021/bi3015482DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4059518PMC
March 2013

Complete mitochondrial DNA genome sequences from the first New Zealanders.

Proc Natl Acad Sci U S A 2012 Nov 22;109(45):18350-4. Epub 2012 Oct 22.

Department of Anatomy, University of Otago, Dunedin, New Zealand.

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http://www.pnas.org/cgi/doi/10.1073/pnas.1209896109
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http://dx.doi.org/10.1073/pnas.1209896109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3494939PMC
November 2012

Screening chelating inhibitors of HIF-prolyl hydroxylase domain 2 (PHD2) and factor inhibiting HIF (FIH).

J Inorg Biochem 2012 Aug 17;113:25-30. Epub 2012 Mar 17.

Department of Chemistry, University of Massachusetts, Amherst, MA 01003, USA.

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http://dx.doi.org/10.1016/j.jinorgbio.2012.03.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3525482PMC
August 2012

Inverse solvent isotope effects demonstrate slow aquo release from hypoxia inducible factor-prolyl hydroxylase (PHD2).

Biochemistry 2012 Aug 9;51(33):6654-66. Epub 2012 Aug 9.

Department of Chemistry, University of Massachusetts, Amherst, MA 01003, USA.

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http://pubs.acs.org/doi/10.1021/bi300229y
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http://dx.doi.org/10.1021/bi300229yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3525350PMC
August 2012

Generating barcoded libraries for multiplex high-throughput sequencing.

Methods Mol Biol 2012 ;840:155-70

Allan Wilson Centre for Molecular Ecology and Evolution, Department of Anatomy and Structural Biology, University of Otago, Dunedin 9016, New Zealand.

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http://link.springer.com/10.1007/978-1-61779-516-9_19
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http://dx.doi.org/10.1007/978-1-61779-516-9_19DOI Listing
May 2012

Setting the stage - building and working in an ancient DNA laboratory.

Ann Anat 2012 Jan 31;194(1):3-6. Epub 2011 Mar 31.

Department of Anatomy and Structural Biology, Allan Wilson Centre for Molecular Ecology and Evolution, University of Otago, Dunedin, New Zealand.

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http://dx.doi.org/10.1016/j.aanat.2011.03.008DOI Listing
January 2012

Design and construction of multicrystal analyser detectors using Rowland circles: application to MAD26 at ALBA.

J Synchrotron Radiat 2011 Nov 22;18(Pt 6):842-50. Epub 2011 Sep 22.

ALBA-CELLS, Carretera, BP 1413, Km. 3.3, E-08290 Cerdanyola, Barcelona, Spain.

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http://dx.doi.org/10.1107/S0909049511031529DOI Listing
November 2011

The next generation of genetic investigations into the Black Death.

Authors:
Michael Knapp

Proc Natl Acad Sci U S A 2011 Sep 8;108(38):15669-70. Epub 2011 Sep 8.

Allan Wilson Centre for Molecular Ecology and Evolution, Department of Anatomy, University of Otago, Dunedin 9016, New Zealand.

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http://dx.doi.org/10.1073/pnas.1112574108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3179035PMC
September 2011

Discovery of lost diversity of paternal horse lineages using ancient DNA.

Nat Commun 2011 Aug 23;2:450. Epub 2011 Aug 23.

Research Group Molecular Ecology, Max Planck Institute for Evolutionary Anthropology, D-04103 Leipzig, Germany.

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http://dx.doi.org/10.1038/ncomms1447DOI Listing
August 2011

Uncoupled O2-activation in the human HIF-asparaginyl hydroxylase, FIH, does not produce reactive oxygen species.

J Inorg Biochem 2011 May 21;105(5):630-6. Epub 2011 Jan 21.

Department of Chemistry, University of Massachusetts, Amherst, MA 01003, United States.

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http://dx.doi.org/10.1016/j.jinorgbio.2011.01.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3081918PMC
May 2011

The second coordination sphere of FIH controls hydroxylation.

Biochemistry 2011 May 3;50(21):4733-40. Epub 2011 May 3.

Department of Chemistry, University of Massachusetts, Amherst, MA 01003, USA.

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http://dx.doi.org/10.1021/bi102042tDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3138472PMC
May 2011

A rapid medical screening process improves emergency department patient flow during surge associated with novel H1N1 influenza virus.

Ann Emerg Med 2011 Jan 13;57(1):52-9. Epub 2010 Oct 13.

Department of Pediatrics and Emergency Medicine, The George Washington University School of Medicine and Health Sciences, Washington, DC, USA.

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http://dx.doi.org/10.1016/j.annemergmed.2010.08.026DOI Listing
January 2011

The DAOA/G30 locus and affective disorders: haplotype based association study in a polydiagnostic approach.

BMC Psychiatry 2010 Jul 29;10:59. Epub 2010 Jul 29.

Department of Psychiatry and Psychotherapy, University of Würzburg, Füchsleinstrasse 15, Würzburg, Germany.

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http://dx.doi.org/10.1186/1471-244X-10-59DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2921107PMC
July 2010