Publications by authors named "Michael J Cox"

70Publications

Co-infections: potentially lethal and unexplored in COVID-19.

Lancet Microbe 2020 May 24;1(1):e11. Epub 2020 Apr 24.

Quadram Institute Bioscience, Norwich, UK.

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http://dx.doi.org/10.1016/S2666-5247(20)30009-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7195315PMC
May 2020

Respiratory Viral Infection Alters the Gut Microbiota by Inducing Inappetence.

mBio 2020 02 18;11(1). Epub 2020 Feb 18.

Mucosal Infection and Immunity Group, Section of Virology, Department of Medicine, St Mary's Campus, Imperial College London, London, United Kingdom

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http://dx.doi.org/10.1128/mBio.03236-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7029140PMC
February 2020

Growing up with your airway microbiota: a risky business.

Thorax 2019 06 10;74(6):525-526. Epub 2019 May 10.

National Heart and Lung Institute, Imperial College of Science Technology and Medicine, London, UK.

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http://dx.doi.org/10.1136/thoraxjnl-2019-213162DOI Listing
June 2019

The effect of astigmatic axis on visual acuity measured with different alphabets in Roman alphabet readers.

Clin Optom (Auckl) 2018 6;10:93-102. Epub 2018 Aug 6.

Bradford School of Optometry and Vision Sciences, University of Bradford, Bradford, UK,

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https://www.dovepress.com/the-effect-of-astigmatic-axis-on-v
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http://dx.doi.org/10.2147/OPTO.S166786DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6181807PMC
August 2018

Respiratory Disease following Viral Lung Infection Alters the Murine Gut Microbiota.

Front Immunol 2018 12;9:182. Epub 2018 Feb 12.

Mucosal Infection and Immunity Group, Department of Medicine, Section of Virology, St. Mary's Campus, Imperial College London, London, United Kingdom.

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http://dx.doi.org/10.3389/fimmu.2018.00182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5816042PMC
April 2019

New opportunities for managing acute and chronic lung infections.

Nat Rev Microbiol 2018 02 24;16(2):111-120. Epub 2017 Oct 24.

Asmarley Centre for Genomic Medicine, National Heart and Lung Institute, Imperial College London, Dovehouse Street, London SW3 6LY, UK.

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http://dx.doi.org/10.1038/nrmicro.2017.122DOI Listing
February 2018

Ventilator-associated pneumonia: when is a pathogen not a pathogen?

Authors:
Michael J Cox

Thorax 2017 09 2;72(9):774-775. Epub 2017 May 2.

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http://dx.doi.org/10.1136/thoraxjnl-2017-209997DOI Listing
September 2017

Gut microbiota and protection from pneumococcal pneumonia.

Gut 2017 02 1;66(2):384. Epub 2016 Apr 1.

National Heart and Lung Institute, Imperial College London, London, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5083249PMC
http://dx.doi.org/10.1136/gutjnl-2016-311823DOI Listing
February 2017

Liquid Growth of Arrayed Fluorescently Tagged Saccharomyces cerevisiae Strains for Live-Cell High-Throughput Microscopy Screens.

Cold Spring Harb Protoc 2016 Apr 1;2016(4):pdb.prot088799. Epub 2016 Apr 1.

The Donnelly Centre, University of Toronto, Toronto, Ontario, M5S 3E1 Canada;

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http://dx.doi.org/10.1101/pdb.prot088799DOI Listing
April 2016

Outside In: Sequencing the Lung Microbiome.

Am J Respir Crit Care Med 2015 Aug;192(4):403-4

1 National Heart and Lung Institute Imperial College London London, United Kingdom.

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http://dx.doi.org/10.1164/rccm.201506-1138EDDOI Listing
August 2015

Yeast Proteome Dynamics from Single Cell Imaging and Automated Analysis.

Cell 2015 Jun;161(6):1413-24

The Donnelly Centre, University of Toronto, Toronto, ON M5S3E1, Canada; Department of Molecular Genetics, University of Toronto, Toronto, ON M5S3E1, Canada. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2015.04.051DOI Listing
June 2015

Sequencing the human microbiome in health and disease.

Hum Mol Genet 2013 Oct 13;22(R1):R88-94. Epub 2013 Aug 13.

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http://dx.doi.org/10.1093/hmg/ddt398DOI Listing
October 2013

Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters.

FEMS Microbiol Lett 2012 Sep 9;334(2):111-8. Epub 2012 Jul 9.

School of Life Sciences, University of Warwick, Coventry, UK.

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https://academic.oup.com/femsle/article-lookup/doi/10.1111/j
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http://dx.doi.org/10.1111/j.1574-6968.2012.02624.xDOI Listing
September 2012

Proteome-wide screens in Saccharomyces cerevisiae using the yeast GFP collection.

Adv Exp Med Biol 2012 ;736:169-78

The Donnelly Centre, Department of Molecular Genetics, University of Toronto, Toronto, Canada.

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http://dx.doi.org/10.1007/978-1-4419-7210-1_8DOI Listing
January 2013

Nucleic acid extraction efficiency and bacterial recovery from maxillary sinus mucosal samples obtained by brushing or biopsy.

Am J Rhinol Allergy 2010 Jul-Aug;24(4):263-5

Department of Otolaryngology-Head and Neck Surgery, University of California, San Francisco, California 94143, USA.

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http://journals.sagepub.com/doi/10.2500/ajra.2010.24.3472
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http://dx.doi.org/10.2500/ajra.2010.24.3472DOI Listing
March 2011

A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.

OMICS 2010 Feb;14(1):9-59

Division of Pulmonary and Critical Care Medicine, Department of Medicine, University of California San Francisco, San Francisco, California 94143-0538, USA.

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http://dx.doi.org/10.1089/omi.2009.0100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3116451PMC
February 2010

Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome.

PLoS One 2010 Jan 18;5(1):e8745. Epub 2010 Jan 18.

Division of Gastroenterology, University of California San Francisco, San Francisco, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0008745PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2807455PMC
January 2010

Identification of carbohydrate metabolism genes in the metagenome of a marine biofilm community shown to be dominated by gammaproteobacteria and bacteroidetes.

Genes (Basel) 2010 Oct 26;1(3):371-84. Epub 2010 Oct 26.

Microbiology Research Group, School of Biological Sciences, BioSciences Building, University of Liverpool, Crown Street, Liverpool, L69 7ZB, UK.

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http://www.mdpi.com/2073-4425/1/3/371
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http://dx.doi.org/10.3390/genes1030371DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3966224PMC
October 2010

The incidence of disorders of sexual differentiation and chromosomal abnormalities of cryptorchidism and hypospadias stratified by meatal location.

J Urol 2008 Dec 31;180(6):2649-52; discussion 2652. Epub 2008 Oct 31.

Division of Pediatric Urology, Washington University, St Louis Children's Hospital, St Louis, Missouri, USA.

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http://dx.doi.org/10.1016/j.juro.2008.08.058DOI Listing
December 2008

Cellulose degradation by micromonosporas recovered from freshwater lakes and classification of these actinomycetes by DNA gyrase B gene sequencing.

Appl Environ Microbiol 2008 Nov 26;74(22):7080-4. Epub 2008 Sep 26.

School of Biological Sciences, Biosciences Building, University of Liverpool, Crown Street, Liverpool, Merseyside L69 7ZB, United Kingdom.

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http://dx.doi.org/10.1128/AEM.01092-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2583502PMC
November 2008

Unintentional transurethral Foley catheterization of the right renal pelvis.

Urol Nurs 2008 Feb;28(1):48-9

Barnes-Jewish Hospital, Washington University School of Medicine, St. Louis, MO, USA.

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February 2008

Detection of novel Fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR.

Environ Microbiol 2008 May 5;10(5):1310-9. Epub 2008 Feb 5.

Microbiology Research Group, School of Biological Sciences, BioSciences Building, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK.

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http://doi.wiley.com/10.1111/j.1462-2920.2007.01544.x
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http://dx.doi.org/10.1111/j.1462-2920.2007.01544.xDOI Listing
May 2008

Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism.

ISME J 2007 Oct 9;1(6):480-91. Epub 2007 Aug 9.

Department of Biological Sciences, University of Warwick, Coventry, UK.

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http://dx.doi.org/10.1038/ismej.2007.65DOI Listing
October 2007

Multilocus characterization scheme for shiga toxin-encoding bacteriophages.

Appl Environ Microbiol 2007 Dec 19;73(24):8032-40. Epub 2007 Oct 19.

School of Biological Sciences, Microbiology Research Group, University of Liverpool, Liverpool L69 7ZB, United Kingdom.

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http://dx.doi.org/10.1128/AEM.01278-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2168134PMC
December 2007

Modelling the spatial tuning of the Hermann grid illusion.

Spat Vis 2007 ;20(5):415-36

Department of Optometry, University of Bradford, Richmond Rd., Bradford, West Yorkshire BD7 1DP, UK.

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http://dx.doi.org/10.1163/156856807781503668DOI Listing
November 2007

Evolutionary and biomedical insights from the rhesus macaque genome.

Authors:
Richard A Gibbs Jeffrey Rogers Michael G Katze Roger Bumgarner George M Weinstock Elaine R Mardis Karin A Remington Robert L Strausberg J Craig Venter Richard K Wilson Mark A Batzer Carlos D Bustamante Evan E Eichler Matthew W Hahn Ross C Hardison Kateryna D Makova Webb Miller Aleksandar Milosavljevic Robert E Palermo Adam Siepel James M Sikela Tony Attaway Stephanie Bell Kelly E Bernard Christian J Buhay Mimi N Chandrabose Marvin Dao Clay Davis Kimberly D Delehaunty Yan Ding Huyen H Dinh Shannon Dugan-Rocha Lucinda A Fulton Ramatu Ayiesha Gabisi Toni T Garner Jennifer Godfrey Alicia C Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan Ewen F Kirkness Andrew Cree R Gerald Fowler Sandra Lee Lora R Lewis Zhangwan Li Yih-Shin Liu Stephanie M Moore Donna Muzny Lynne V Nazareth Dinh Ngoc Ngo Geoffrey O Okwuonu Grace Pai David Parker Heidie A Paul Cynthia Pfannkoch Craig S Pohl Yu-Hui Rogers San Juana Ruiz Aniko Sabo Jireh Santibanez Brian W Schneider Scott M Smith Erica Sodergren Amanda F Svatek Teresa R Utterback Selina Vattathil Wesley Warren Courtney Sherell White Asif T Chinwalla Yucheng Feng Aaron L Halpern Ladeana W Hillier Xiaoqiu Huang Pat Minx Joanne O Nelson Kymberlie H Pepin Xiang Qin Granger G Sutton Eli Venter Brian P Walenz John W Wallis Kim C Worley Shiaw-Pyng Yang Steven M Jones Marco A Marra Mariano Rocchi Jacqueline E Schein Robert Baertsch Laura Clarke Miklós Csürös Jarret Glasscock R Alan Harris Paul Havlak Andrew R Jackson Huaiyang Jiang Yue Liu David N Messina Yufeng Shen Henry Xing-Zhi Song Todd Wylie Lan Zhang Ewan Birney Kyudong Han Miriam K Konkel Jungnam Lee Arian F A Smit Brygg Ullmer Hui Wang Jinchuan Xing Richard Burhans Ze Cheng John E Karro Jian Ma Brian Raney Xinwei She Michael J Cox Jeffery P Demuth Laura J Dumas Sang-Gook Han Janet Hopkins Anis Karimpour-Fard Young H Kim Jonathan R Pollack Tomas Vinar Charles Addo-Quaye Jeremiah Degenhardt Alexandra Denby Melissa J Hubisz Amit Indap Carolin Kosiol Bruce T Lahn Heather A Lawson Alison Marklein Rasmus Nielsen Eric J Vallender Andrew G Clark Betsy Ferguson Ryan D Hernandez Kashif Hirani Hildegard Kehrer-Sawatzki Jessica Kolb Shobha Patil Ling-Ling Pu Yanru Ren David Glenn Smith David A Wheeler Ian Schenck Edward V Ball Rui Chen David N Cooper Belinda Giardine Fan Hsu W James Kent Arthur Lesk David L Nelson William E O'brien Kay Prüfer Peter D Stenson James C Wallace Hui Ke Xiao-Ming Liu Peng Wang Andy Peng Xiang Fan Yang Galt P Barber David Haussler Donna Karolchik Andy D Kern Robert M Kuhn Kayla E Smith Ann S Zwieg

Science 2007 Apr;316(5822):222-34

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1126/science.1139247DOI Listing
April 2007

Attributable cost of catheter-associated bloodstream infections among intensive care patients in a nonteaching hospital.

Crit Care Med 2006 Aug;34(8):2084-9

Divisions of Infectious Diseases, Washington University School of Medicine, St. Louis, MO, USA.

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http://dx.doi.org/10.1097/01.CCM.0000227648.15804.2DDOI Listing
August 2006

Limitations of correcting spherical aberration with aspheric intraocular lenses.

J Refract Surg 2005 Sep-Oct;21(5):S541-6

Department of Optometry, University of Bradford, United Kingdom.

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November 2005

Use of DNA-stable isotope probing and functional gene probes to investigate the diversity of methyl chloride-utilizing bacteria in soil.

Environ Microbiol 2005 Sep;7(9):1318-28

Department of Biological Sciences, University of Warwick, Coventry CV4 7AL, UK.

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http://dx.doi.org/10.1111/j.1462-5822.2005.00819.xDOI Listing
September 2005

Effect of cataract surgery incision location and intraocular lens type on ocular aberrations.

J Cataract Refract Surg 2005 Apr;31(4):725-34

Department of Optometry, University of Bradford, West Yorkshire, United Kingdom.

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http://dx.doi.org/10.1016/j.jcrs.2004.09.028DOI Listing
April 2005

Folding efficiency is rate-limiting in dopamine D4 receptor biogenesis.

J Biol Chem 2005 May 8;280(19):19350-7. Epub 2005 Mar 8.

Laboratory of Molecular Neurobiology, Center for Addiction and Mental Health, Toronto, Ontario M5T 1R8, Canada.

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http://dx.doi.org/10.1074/jbc.M414043200DOI Listing
May 2005

Attenuation of oxidative stress and remodeling by cardiac inhibitor of metalloproteinase protein transfer.

Circulation 2004 May 26;109(17):2123-8. Epub 2004 Apr 26.

Department of Physiology and Biophysics, School of Medicine, University of Louisville, Louisville, Ky 40202, USA.

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http://dx.doi.org/10.1161/01.CIR.0000127429.53391.78DOI Listing
May 2004

Correcting ocular spherical aberration with soft contact lenses.

J Opt Soc Am A Opt Image Sci Vis 2004 Apr;21(4):473-85

Department of Optometry, University of Bradford, Richmond Road, Bradford, BD7 1DP UK.

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http://dx.doi.org/10.1364/josaa.21.000473DOI Listing
April 2004

Verification of aspheric contact lens back surfaces.

Optom Vis Sci 2003 Aug;80(8):596-605

Department of Optometry, University of Bradford, Richmond Road, Bradford/West Yorkshire BD7 1DP, UK.

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http://dx.doi.org/10.1097/00006324-200308000-00014DOI Listing
August 2003

An educational intervention to prevent catheter-associated bloodstream infections in a nonteaching, community medical center.

Crit Care Med 2003 Jul;31(7):1959-63

Washington University School of Medicine, Saint Louis, MO 63110, USA.

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http://dx.doi.org/10.1097/01.CCM.0000069513.15417.1CDOI Listing
July 2003

Wavefront aberration and its relationship to the accommodative stimulus-response function in myopic subjects.

Optom Vis Sci 2003 Feb;80(2):151-8

Department of Optometry, University of Bradford, Bradford, United Kingdom.

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http://dx.doi.org/10.1097/00006324-200302000-00011DOI Listing
February 2003

On- and off-eye spherical aberration of soft contact lenses and consequent changes of effective lens power.

Optom Vis Sci 2003 Feb;80(2):126-34

University of Bradford, Department of Optometry, Bradford, United Kingdom.

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http://dx.doi.org/10.1097/00006324-200302000-00008DOI Listing
February 2003

Scatter and its implications for the measurement of optical image quality in human eyes.

Optom Vis Sci 2003 Jan;80(1):58-68

Department of Optometry, University of Bradford, Richmond Road, Bradford, West Yorkshire, United Kingdom.

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http://dx.doi.org/10.1097/00006324-200301000-00009DOI Listing
January 2003

Potential vision testing--the relationship between visual acuity and Vernier acuity in the presence of simulated cataract.

Ophthalmic Physiol Opt 2002 Nov;22(6):469-81

Department of Optometry, University of Bradford, UK.

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http://dx.doi.org/10.1046/j.1475-1313.2002.00051.xDOI Listing
November 2002

Generation of nitrotyrosine precedes activation of metalloproteinase in myocardium of hyperhomocysteinemic rats.

Antioxid Redox Signal 2002 Oct;4(5):799-804

Department of Physiology and Biophysics, School of Medicine, University of Mississippi Medical Center, Jackson, MS 39216, USA.

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http://dx.doi.org/10.1089/152308602760598954DOI Listing
October 2002

Remodeling of the left atrium in pacing-induced atrial cardiomyopathy.

Mol Cell Biochem 2002 Sep;238(1-2):145-50

University Hospitals of Cleveland and Case Western Reserve University, OH, USA.

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http://dx.doi.org/10.1023/a:1019988024077DOI Listing
September 2002

Apoptosis in the left ventricle of chronic volume overload causes endocardial endothelial dysfunction in rats.

Am J Physiol Heart Circ Physiol 2002 Apr;282(4):H1197-205

Department of Physiology and Biophysics, School of Medicine, University of Mississippi Medical Center, Jackson, Mississippi 39216, USA.

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http://dx.doi.org/10.1152/ajpheart.00483.2001DOI Listing
April 2002