Michael Imelfort

Michael Imelfort

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Michael Imelfort

Michael Imelfort

Publications by authors named "Michael Imelfort"

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19Publications

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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Genome Res 2015 Jul 14;25(7):1043-55. Epub 2015 May 14.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD 4072, Queensland, Australia; Advanced Water Management Centre, The University of Queensland, St. Lucia, QLD 4072, Queensland, Australia.

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http://dx.doi.org/10.1101/gr.186072.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4484387PMC
July 2015

GroopM: an automated tool for the recovery of population genomes from related metagenomes.

PeerJ 2014 30;2:e603. Epub 2014 Sep 30.

Australian Center for Ecogenomics (ACE), School of Chemistry and Molecular Biosciences, The University of Queensland , St Lucia, QLD , Australia ; Advanced Water Management Center (AWMC), The University of Queensland , St Lucia, QLD , Australia.

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http://dx.doi.org/10.7717/peerj.603DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183954PMC
October 2014

An expanded genomic representation of the phylum cyanobacteria.

Genome Biol Evol 2014 May;6(5):1031-45

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, Queensland, Australia.

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http://dx.doi.org/10.1093/gbe/evu073DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4040986PMC
May 2014

Inferring short tandem repeat variation from paired-end short reads.

Nucleic Acids Res 2014 Feb 17;42(3):e16. Epub 2013 Dec 17.

School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, St Lucia QLD 4072, Australia, Clayton School of Information Technology, Monash University, Clayton, VIC 3800, Australia, School of Biological Sciences, Monash University, Melbourne, Australia and Advanced Water Management Centre, The University of Queensland, Queensland, Australia.

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http://dx.doi.org/10.1093/nar/gkt1313DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3919575PMC
February 2014

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage.

Nature 2013 Aug 28;500(7464):567-70. Epub 2013 Jul 28.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Queensland 4072, Australia.

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http://dx.doi.org/10.1038/nature12375DOI Listing
August 2013

Crass: identification and reconstruction of CRISPR from unassembled metagenomic data.

Nucleic Acids Res 2013 May 19;41(10):e105. Epub 2013 Mar 19.

Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences and Advanced Water Management Centre, The University of Queensland, St Lucia, Brisbane, Queensland 4072, Australia.

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http://dx.doi.org/10.1093/nar/gkt183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3664793PMC
May 2013

Spatial uniformity of microbial diversity in a continuous bioelectrochemical system.

Bioresour Technol 2013 Feb 4;129:599-605. Epub 2012 Dec 4.

Advanced Water Management Centre, The University of Queensland, Brisbane, Queensland 4072, Australia.

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http://dx.doi.org/10.1016/j.biortech.2012.11.098DOI Listing
February 2013

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.

Plant Biotechnol J 2011 Sep 28;9(7):768-75. Epub 2011 Feb 28.

School of Land, Crop and Food Sciences and Australian Centre for Plant Functional Genomics, University of Queensland, Brisbane, QLD, Australia.

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http://dx.doi.org/10.1111/j.1467-7652.2010.00587.xDOI Listing
September 2011

Future tools for association mapping in crop plants.

Genome 2010 Nov;53(11):1017-23

University of Queensland, Australian Centre for Plant Functional Genomics, School of Land, Crop and Food Sciences, Brisbane, Australia.

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http://dx.doi.org/10.1139/G10-057DOI Listing
November 2010

Targeted identification of genomic regions using TAGdb.

Plant Methods 2010 Aug 20;6:19. Epub 2010 Aug 20.

University of Queensland, Australian Centre for Plant Functional Genomics, School of Land, Crop and Food Sciences, Brisbane, QLD 4067, Australia.

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http://dx.doi.org/10.1186/1746-4811-6-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2939534PMC
August 2010

CMap3D: a 3D visualization tool for comparative genetic maps.

Bioinformatics 2010 Jan 25;26(2):273-4. Epub 2009 Nov 25.

Australian Centre for Plant Functional Genomics, University of Queensland, Brisbane, QLD 4072, Australia.

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http://dx.doi.org/10.1093/bioinformatics/btp646DOI Listing
January 2010

De novo sequencing of plant genomes using second-generation technologies.

Brief Bioinform 2009 Nov;10(6):609-18

Australian Centre for Plant Functional Genomics, Institute for Molecular Biosciences and School of Land, Crop and Food Sciences, University of Queensland, Brisbane, QLD 4072, Australia.

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https://academic.oup.com/bib/article-lookup/doi/10.1093/bib/
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http://dx.doi.org/10.1093/bib/bbp039DOI Listing
November 2009

Genome sequencing approaches and successes.

Methods Mol Biol 2009 ;513:345-58

Australian Centre for Plant Functional Genomics, School of Land, Crop and Food Sciences, University of Queensland, Brisbane, Australia.

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http://dx.doi.org/10.1007/978-1-59745-427-8_18DOI Listing
May 2009

Discovering genetic polymorphisms in next-generation sequencing data.

Plant Biotechnol J 2009 May;7(4):312-7

Australian Centre for Plant Functional Genomics, School of Land, Crop and Food Sciences, University of Queensland, Brisbane, QLD 4072, Australia.

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http://dx.doi.org/10.1111/j.1467-7652.2009.00406.xDOI Listing
May 2009

Single nucleotide polymorphism discovery in barley using autoSNPdb.

Plant Biotechnol J 2009 May;7(4):326-33

Australian Centre for Plant Functional Genomics, School of Land, Crop and Food Sciences, Institute for Molecular Bioscience, University of Queensland, Brisbane, Qld 4072, Australia.

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http://doi.wiley.com/10.1111/j.1467-7652.2009.00407.x
Publisher Site
http://dx.doi.org/10.1111/j.1467-7652.2009.00407.xDOI Listing
May 2009

AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants.

Nucleic Acids Res 2009 Jan 14;37(Database issue):D951-3. Epub 2008 Oct 14.

Australian Centre for Plant Functional Genomics, Brisbane, School of Land, Crop and Food Sciences, University of Queensland, Brisbane, QLD 4072, Australia.

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http://dx.doi.org/10.1093/nar/gkn650DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686484PMC
January 2009