Michael I Miller

Michael I Miller

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Michael I Miller

Michael I Miller

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Multi-atlas based detection and localization (MADL) for location-dependent quantification of white matter hyperintensities.

Neuroimage Clin 2019 13;22:101772. Epub 2019 Mar 13.

Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, USA; F.M. Kirby Research Center for Functional Brain Imaging, Kennedy Krieger Institute, Baltimore, MD, USA.

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http://dx.doi.org/10.1016/j.nicl.2019.101772DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6444296PMC
January 2020

Magnetic resonance imaging of mouse brain networks plasticity following motor learning.

PLoS One 2019 8;14(5):e0216596. Epub 2019 May 8.

Department of Neurology, Duke University Medical Center, Durham, NC, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0216596PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6505950PMC
January 2020

Association of peripheral inflammatory markers with connectivity in large-scale functional brain networks of non-demented older adults.

Brain Behav Immun 2020 Jan 11. Epub 2020 Jan 11.

Division of Geriatric Medicine and Gerontology, Center on Aging and Health, Johns Hopkins University School of Medicine, Baltimore, United States. Electronic address:

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http://dx.doi.org/10.1016/j.bbi.2020.01.006DOI Listing
January 2020

Cortical thickness atrophy in the transentorhinal cortex in mild cognitive impairment.

Neuroimage Clin 2019 5;21:101617. Epub 2018 Dec 5.

Center for Imaging Science, The Johns Hopkins University, Baltimore, MD 21218, USA; Institute for Computational Medicine, The Johns Hopkins University, Baltimore, MD 21218, USA; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205, USA; Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD 21218, USA.

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http://dx.doi.org/10.1016/j.nicl.2018.101617DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6412863PMC
December 2019

Using deep Siamese neural networks for detection of brain asymmetries associated with Alzheimer's Disease and Mild Cognitive Impairment.

Magn Reson Imaging 2019 12 15;64:190-199. Epub 2019 Jul 15.

Center for Imaging Science, Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA; Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD, USA. Electronic address:

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http://dx.doi.org/10.1016/j.mri.2019.07.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874905PMC
December 2019

Developmental trajectories of the human embryologic brain regions.

Neurosci Lett 2019 08 19;708:134342. Epub 2019 Jun 19.

Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, United States; The Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, United States. Electronic address:

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http://dx.doi.org/10.1016/j.neulet.2019.134342DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6697108PMC
August 2019

Response control correlates of anomalous basal ganglia morphology in boys, but not girls, with attention-deficit/hyperactivity disorder.

Behav Brain Res 2019 07 23;367:117-127. Epub 2019 Mar 23.

The Center for Neurodevelopmental and Imaging Research, Kennedy Krieger Institute, Baltimore, MD, USA; Department of Neuropsychology, Kennedy Krieger Institute, Baltimore, MD, USA. Electronic address:

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http://dx.doi.org/10.1016/j.bbr.2019.03.036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6520987PMC
July 2019

Extended multimodal whole-brain anatomical covariance analysis: detection of disrupted correlation networks related to amyloid deposition.

Heliyon 2019 Jul 20;5(7):e02074. Epub 2019 Jul 20.

The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.1016/j.heliyon.2019.e02074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6656959PMC
July 2019

Editorial: Bayesian Estimation and Inference in Computational Anatomy and Neuroimaging: Methods and Applications.

Front Neurosci 2019 29;13:562. Epub 2019 May 29.

Center for Imaging Science, Johns Hopkins University, Baltimore, MD, United States.

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http://dx.doi.org/10.3389/fnins.2019.00562DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6549538PMC
May 2019

Regional subcortical shape analysis in premanifest Huntington's disease.

Hum Brain Mapp 2019 04 30;40(5):1419-1433. Epub 2018 Oct 30.

Center for Imaging Science, Johns Hopkins University, Baltimore, Maryland.

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http://dx.doi.org/10.1002/hbm.24456DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6420821PMC
April 2019

Identifying Changepoints in Biomarkers During the Preclinical Phase of Alzheimer's Disease.

Front Aging Neurosci 2019 2;11:74. Epub 2019 Apr 2.

Department of Applied Mathematics and Statistics, Johns Hopkins University, Baltimore, MD, United States.

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http://dx.doi.org/10.3389/fnagi.2019.00074DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6454004PMC
April 2019

Atlas pre-selection strategies to enhance the efficiency and accuracy of multi-atlas brain segmentation tools.

PLoS One 2018 27;13(7):e0200294. Epub 2018 Jul 27.

The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, MD, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0200294PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6063392PMC
January 2019

On variational solutions for whole brain serial-section histology using a Sobolev prior in the computational anatomy random orbit model.

PLoS Comput Biol 2018 12 26;14(12):e1006610. Epub 2018 Dec 26.

Center for Imaging Science, Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.

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http://dx.doi.org/10.1371/journal.pcbi.1006610DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324828PMC
December 2018

Computational anatomy and diffeomorphometry: A dynamical systems model of neuroanatomy in the soft condensed matter continuum.

Wiley Interdiscip Rev Syst Biol Med 2018 11 4;10(6):e1425. Epub 2018 Jun 4.

Department of Applied Mathematics and Statistics, Johns Hopkins University, Baltimore, Maryland.

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http://dx.doi.org/10.1002/wsbm.1425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6195456PMC
November 2018

ESTIMATING DIFFEOMORPHIC MAPPINGS BETWEEN TEMPLATES AND NOISY DATA: VARIANCE BOUNDS ON THE ESTIMATED CANONICAL VOLUME FORM.

Q Appl Math 2019 20;77:467-488. Epub 2018 Nov 20.

Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland 21218.

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http://dx.doi.org/10.1090/qam/1527DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6924927PMC
November 2018

Whole-brain Segmentation and Change-point Analysis of Anatomical Brain MRI-Application in Premanifest Huntington's Disease.

J Vis Exp 2018 06 9(136). Epub 2018 Jun 9.

Center for Imaging Science, Johns Hopkins University; Institute for Computational Medicine, Johns Hopkins University; Department of Biomedical Engineering, Johns Hopkins University.

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http://dx.doi.org/10.3791/57256DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6101648PMC
June 2018

Progressive medial temporal lobe atrophy during preclinical Alzheimer's disease.

Neuroimage Clin 2017 25;16:439-446. Epub 2017 Aug 25.

Department of Neurology, Johns Hopkins School of Medicine, Baltimore, MD 21205, United States.

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http://dx.doi.org/10.1016/j.nicl.2017.08.022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5577409PMC
May 2018

Predicting progression from normal cognition to mild cognitive impairment for individuals at 5 years.

Brain 2018 03;141(3):877-887

Department of Biostatistics, Johns Hopkins University, Bloomberg School of Public Health, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1093/brain/awx365DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5837651PMC
March 2018

Population-averaged macaque brain atlas with high-resolution ex vivo DTI integrated into in vivo space.

Brain Struct Funct 2017 Dec 20;222(9):4131-4147. Epub 2017 Jun 20.

Radiology Research, Children's Hospital of Philadelphia, 3401 Civic Center Blvd, Philadelphia, PA, 19104, USA.

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http://dx.doi.org/10.1007/s00429-017-1463-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5687984PMC
December 2017

Cognitive reserve and long-term change in cognition in aging and preclinical Alzheimer's disease.

Neurobiol Aging 2017 12 11;60:164-172. Epub 2017 Sep 11.

Department of Neurology, The Johns Hopkins University School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.1016/j.neurobiolaging.2017.09.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5679465PMC
December 2017

Temporal Subtraction of Serial CT Images with Large Deformation Diffeomorphic Metric Mapping in the Identification of Bone Metastases.

Radiology 2017 11 3;285(2):629-639. Epub 2017 Jul 3.

From the Department of Diagnostic Imaging and Nuclear Medicine, Graduate School of Medicine, Kyoto University, 54 Kawaharacho, Shogoin, Sakyo-ku, Kyoto 606-8507, Japan (R.S., M.Y., K.F., T.K., T.A., K.T.); Advanced Information & Real-world Technology Development Center 1, Canon, Kyoto, Japan (K.N., G.A., H.Y.); Clinical Research Center for Medical Equipment Development, Kyoto University Hospital, Shogoin, Sakyo-ku, Kyoto, Japan (K.N., G.A., H.Y.); Department of Medical Science, Kyoto College of Medical Science, Oyama-Higashimachi, Sonobe-cho, Nantan, Kyoto, Japan (Y.E.); Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Md (M.I.M.); Center for Imaging Science, Johns Hopkins University, Baltimore, Md (M.I.M.); Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, Md (S.M.); and F.M. Kirby Functional Imaging Center, Kennedy Krieger Institute, Johns Hopkins University, Baltimore, Md (S.M.).

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http://dx.doi.org/10.1148/radiol.2017161942DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5673054PMC
November 2017

Bayesian Parameter Estimation and Segmentation in the Multi-Atlas Random Orbit Model.

PLoS One 2013 18;8(6):e65591. Epub 2013 Jun 18.

Center for Imaging Science, The Johns Hopkins University, Baltimore, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0065591PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3688886PMC
October 2017

On the Complexity of Human Neuroanatomy at the Millimeter Morphome Scale: Developing Codes and Characterizing Entropy Indexed to Spatial Scale.

Front Neurosci 2017 18;11:577. Epub 2017 Oct 18.

Center for Imaging Science, Department of Biomedical Engineering, Kavli Neuroscience Discovery Institute, Johns Hopkins University, Baltimore, MD, United States.

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http://dx.doi.org/10.3389/fnins.2017.00577DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5651257PMC
October 2017

Brain MRI Pattern Recognition Translated to Clinical Scenarios.

Front Neurosci 2017 20;11:578. Epub 2017 Oct 20.

Department of Radiology, Johns Hopkins University, Baltimore, MD, United States.

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http://dx.doi.org/10.3389/fnins.2017.00578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5655969PMC
October 2017

BIOMARKER CHANGE-POINT ESTIMATION WITH RIGHT CENSORING IN LONGITUDINAL STUDIES.

Ann Appl Stat 2017 Sep;11(3):1738-1762

Center for Imaging Science, Johns Hopkins University, 3400 N. Charles St. Baltimore, Maryland 21218 USA.

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https://projecteuclid.org/euclid.aoas/1507168846
Publisher Site
http://dx.doi.org/10.1214/17-AOAS1056DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6157754PMC
September 2017

Education is associated with sub-regions of the hippocampus and the amygdala vulnerable to neuropathologies of Alzheimer's disease.

Brain Struct Funct 2017 04 17;222(3):1469-1479. Epub 2016 Aug 17.

Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.

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http://dx.doi.org/10.1007/s00429-016-1287-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5850930PMC
April 2017

Linking white matter and deep gray matter alterations in premanifest Huntington disease.

Neuroimage Clin 2016 26;11:450-460. Epub 2016 Feb 26.

Center for Imaging Science, The Johns Hopkins University, Baltimore, MD, USA; Institute for Computational Medicine, The Johns Hopkins University, Baltimore, MD, USA; Department of Biomedical Engineering, The Johns Hopkins University, Baltimore, MD, USA.

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http://dx.doi.org/10.1016/j.nicl.2016.02.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4827723PMC
December 2016

Shape and diffusion tensor imaging based integrative analysis of the hippocampus and the amygdala in Alzheimer's disease.

Magn Reson Imaging 2016 Oct 20;34(8):1087-99. Epub 2016 May 20.

Center for Imaging Science, Johns Hopkins University, Baltimore, MD, USA; Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.

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http://dx.doi.org/10.1016/j.mri.2016.05.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6058972PMC
October 2016

Hamiltonian Systems and Optimal Control in Computational Anatomy: 100 Years Since D'Arcy Thompson.

Annu Rev Biomed Eng 2015 4;17:447-509. Epub 2015 Nov 4.

Center of Imaging Science.

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http://dx.doi.org/10.1146/annurev-bioeng-071114-040601DOI Listing
September 2016

Direct estimation of patient attributes from anatomical MRI based on multi-atlas voting.

Neuroimage Clin 2016;12:570-581. Epub 2016 Sep 14.

Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, USA; F.M. Kirby Research Center for Functional Brain Imaging, Kennedy Krieger Institute, Baltimore, MD, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031476PMC
http://dx.doi.org/10.1016/j.nicl.2016.09.008DOI Listing
September 2016

Resource atlases for multi-atlas brain segmentations with multiple ontology levels based on T1-weighted MRI.

Neuroimage 2016 Jan 21;125:120-130. Epub 2015 Oct 21.

Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, USA; F.M. Kirby Research Center for Functional Brain Imaging, Kennedy Krieger Institute, Baltimore, MD, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2015.10.042DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691373PMC
January 2016

Baseline shape diffeomorphometry patterns of subcortical and ventricular structures in predicting conversion of mild cognitive impairment to Alzheimer's disease.

J Alzheimers Dis 2015 ;44(2):599-611

Center for Imaging Science, Johns Hopkins University, Baltimore, MD, USA Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.

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http://dx.doi.org/10.3233/JAD-141605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4474004PMC
September 2015

Content-based image retrieval for brain MRI: an image-searching engine and population-based analysis to utilize past clinical data for future diagnosis.

Neuroimage Clin 2015 15;7:367-76. Epub 2015 Jan 15.

The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, MD, USA ; F.M. Kirby Research Center for Functional Brain Imaging, Kennedy Krieger Institute, Baltimore, MD, USA.

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http://dx.doi.org/10.1016/j.nicl.2015.01.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4309952PMC
September 2015

Network Neurodegeneration in Alzheimer's Disease via MRI Based Shape Diffeomorphometry and High-Field Atlasing.

Front Bioeng Biotechnol 2015 15;3:54. Epub 2015 May 15.

Center for Imaging Science, Johns Hopkins University , Baltimore, MD , USA ; Institute for Computational Medicine, Johns Hopkins University , Baltimore, MD , USA ; Department of Applied Mathematics and Statistics, Johns Hopkins University , Baltimore, MD , USA.

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http://dx.doi.org/10.3389/fbioe.2015.00054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4515983PMC
August 2015

Relationship of medial temporal lobe atrophy, APOE genotype, and cognitive reserve in preclinical Alzheimer's disease.

Hum Brain Mapp 2015 Jul 16;36(7):2826-41. Epub 2015 Apr 16.

Center for Imaging Science and Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA.

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http://dx.doi.org/10.1002/hbm.22810DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4478167PMC
July 2015

Multi-contrast multi-atlas parcellation of diffusion tensor imaging of the human brain.

PLoS One 2014 8;9(5):e96985. Epub 2014 May 8.

Center for Imaging Science, Johns Hopkins University, Baltimore, Maryland, United States of America; Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America; F.M. Kirby Research Center for Functional Brain Imaging, Kennedy Krieger Institute, Baltimore, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0096985PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4014574PMC
June 2015

The diffeomorphometry of regional shape change rates and its relevance to cognitive deterioration in mild cognitive impairment and Alzheimer's disease.

Hum Brain Mapp 2015 Jun 3;36(6):2093-117. Epub 2015 Feb 3.

Whiting School of Engineering, Center for Imaging Science, Johns Hopkins University, Baltimore, Maryland.

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http://dx.doi.org/10.1002/hbm.22758DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4474005PMC
June 2015

Morphometry of the amygdala in schizophrenia and psychotic bipolar disorder.

Schizophr Res 2015 May 9;164(1-3):199-202. Epub 2015 Mar 9.

Center for Imaging Science, Johns Hopkins University, Baltimore, MD, USA; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD, USA; Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA.

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http://dx.doi.org/10.1016/j.schres.2015.02.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4439197PMC
May 2015

Inferring changepoint times of medial temporal lobe morphometric change in preclinical Alzheimer's disease.

Neuroimage Clin 2014 21;5:178-87. Epub 2014 Apr 21.

Center for Imaging Science, Johns Hopkins University, Baltimore, MD 21218, USA ; Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD 21218, USA ; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.

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http://dx.doi.org/10.1016/j.nicl.2014.04.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4110355PMC
March 2015

Segmentation of brain magnetic resonance images based on multi-atlas likelihood fusion: testing using data with a broad range of anatomical and photometric profiles.

Front Neurosci 2015 3;9:61. Epub 2015 Mar 3.

Center for Imaging Science, Johns Hopkins University Baltimore, MD, USA ; Department of Biomedical Engineering, Johns Hopkins University School of Medicine Baltimore, MD, USA.

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http://dx.doi.org/10.3389/fnins.2015.00061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4347448PMC
March 2015

Diffusion tensor imaging for understanding brain development in early life.

Annu Rev Psychol 2015 Jan;66:853-76

Department of Biomedical Engineering and Clinical Imaging Research Center, National University of Singapore, 117576 Singapore; email:

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http://dx.doi.org/10.1146/annurev-psych-010814-015340DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4474038PMC
January 2015

Tools for multiple granularity analysis of brain MRI data for individualized image analysis.

Neuroimage 2014 Nov 27;101:168-76. Epub 2014 Jun 27.

The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, MD, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2014.06.046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165692PMC
November 2014

A Bayesian approach to the creation of a study-customized neonatal brain atlas.

Neuroimage 2014 Nov 12;101:256-67. Epub 2014 Jul 12.

The Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2014.07.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165785PMC
November 2014

Detection of time-varying structures by large deformation diffeomorphic metric mapping to aid reading of high-resolution CT images of the lung.

PLoS One 2014 13;9(1):e85580. Epub 2014 Jan 13.

Department of Diagnostic Imaging and Nuclear Medicine, Kyoto University Graduate School of Medicine, Kyoto, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0085580PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3890326PMC
September 2014

Shape abnormalities of subcortical and ventricular structures in mild cognitive impairment and Alzheimer's disease: detecting, quantifying, and predicting.

Hum Brain Mapp 2014 Aug 17;35(8):3701-25. Epub 2014 Jan 17.

Center for Imaging Science, Johns Hopkins University, Baltimore, MD, USA; Department of Electrical and Computer Engineering, Johns Hopkins University, Baltimore, MD, USA.

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http://dx.doi.org/10.1002/hbm.22431DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4474087PMC
August 2014

Regionally selective atrophy of subcortical structures in prodromal HD as revealed by statistical shape analysis.

Hum Brain Mapp 2014 Mar 20;35(3):792-809. Epub 2012 Dec 20.

Center for Imaging Science, Institute for Computational Medicine and Department of Applied Mathematics and Statistics, Johns Hopkins University, WSE, Baltimore, Maryland.

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http://dx.doi.org/10.1002/hbm.22214DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715588PMC
March 2014

Knowledge-based automated reconstruction of human brain white matter tracts using a path-finding approach with dynamic programming.

Neuroimage 2014 Mar 14;88:271-81. Epub 2013 Oct 14.

The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, MD, USA; F. M. Kirby Research Center for Functional Brain Imaging, Kennedy Krieger Institute, Baltimore, MD, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2013.10.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3944922PMC
March 2014

Atlas-based neuroinformatics via MRI: harnessing information from past clinical cases and quantitative image analysis for patient care.

Annu Rev Biomed Eng 2013 29;15:71-92. Epub 2013 Apr 29.

The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1146/annurev-bioeng-071812-152335DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3719383PMC
February 2014

Evaluation of group-specific, whole-brain atlas generation using Volume-based Template Estimation (VTE): application to normal and Alzheimer's populations.

Neuroimage 2014 Jan 16;84:406-19. Epub 2013 Sep 16.

Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, MD, USA; The Russell H. Morgan Department of Radiology and Radiological Science, Johns Hopkins University School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2013.09.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3860098PMC
January 2014

High-throughput neuro-imaging informatics.

Front Neuroinform 2013 17;7:31. Epub 2013 Dec 17.

The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine Baltimore, MD, USA.

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http://dx.doi.org/10.3389/fninf.2013.00031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3865387PMC
January 2014

Gross feature recognition of Anatomical Images based on Atlas grid (GAIA): Incorporating the local discrepancy between an atlas and a target image to capture the features of anatomic brain MRI.

Neuroimage Clin 2013 14;3:202-11. Epub 2013 Aug 14.

The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, MD, USA ; Department of Radiology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.

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http://dx.doi.org/10.1016/j.nicl.2013.08.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791278PMC
November 2013

Northwestern University Schizophrenia Data and Software Tool (NUSDAST).

Front Neuroinform 2013 7;7:25. Epub 2013 Nov 7.

Department of Radiology, Northwestern University Feinberg School of Medicine Chicago, IL, USA ; Department of Psychiatry and Behavioral Sciences, Northwestern University Feinberg School of Medicine Chicago, IL, USA.

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http://dx.doi.org/10.3389/fninf.2013.00025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3819522PMC
November 2013

Robust Diffeomorphic Mapping via Geodesically Controlled Active Shapes.

Int J Biomed Imaging 2013 3;2013:205494. Epub 2013 Apr 3.

Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.

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http://dx.doi.org/10.1155/2013/205494DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3638714PMC
May 2013

Diffeomorphic brain mapping based on T1-weighted images: improvement of registration accuracy by multichannel mapping.

J Magn Reson Imaging 2013 Jan 12;37(1):76-84. Epub 2012 Sep 12.

Department of Biomedical Engineering, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1002/jmri.23790DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3525783PMC
January 2013

Computational medicine: translating models to clinical care.

Sci Transl Med 2012 Oct;4(158):158rv11

The Institute for Computational Medicine, Center for Cardiovascular Bioinformatics and Modeling, and Department of Biomedical Engineering, The Johns Hopkins University School of Medicine, Baltimore, MD 21218, USA.

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http://dx.doi.org/10.1126/scitranslmed.3003528DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3618897PMC
October 2012

Atlas-based analysis of resting-state functional connectivity: evaluation for reproducibility and multi-modal anatomy-function correlation studies.

Neuroimage 2012 Jul 3;61(3):613-21. Epub 2012 Apr 3.

The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2012.03.078DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3358461PMC
July 2012

Spatiotemporal mapping of brain atrophy in mouse models of Huntington's disease using longitudinal in vivo magnetic resonance imaging.

Neuroimage 2012 May 9;60(4):2086-95. Epub 2012 Feb 9.

Division of NMR Research, Department of Radiology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2012.01.141DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3321064PMC
May 2012

Principal component based diffeomorphic surface mapping.

IEEE Trans Med Imaging 2012 Feb 19;31(2):302-11. Epub 2011 Sep 19.

Department of Bioengineering and Clinical Imaging Research Center, National University of Singapore, 117574 Singapore.

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http://dx.doi.org/10.1109/TMI.2011.2168567DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3619441PMC
February 2012

A bayesian generative model for surface template estimation.

Int J Biomed Imaging 2010 20;2010. Epub 2010 Sep 20.

Center for Imaging Science, Department of Biomedical Engineering, The Johns Hopkins University, 320 Clark Hall, Baltimore, MD 21218, USA.

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http://dx.doi.org/10.1155/2010/974957DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2946602PMC
July 2011

A framework on surface-based connectivity quantification for the human brain.

J Neurosci Methods 2011 Apr 17;197(2):324-32. Epub 2011 Mar 17.

Advanced Imaging Research Center, University of Texas Southwestern Medical Center, United States.

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http://dx.doi.org/10.1016/j.jneumeth.2011.02.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3081907PMC
April 2011

Quantitative analysis of brain pathology based on MRI and brain atlases--applications for cerebral palsy.

Neuroimage 2011 Feb 5;54(3):1854-61. Epub 2010 Nov 5.

The Russell H. Morgan Department of Radiology and Radiological Science, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2010.09.061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3008311PMC
February 2011