Michael G Katze

Michael G Katze

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Michael G Katze

Michael G Katze

Publications by authors named "Michael G Katze"

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Early nasopharyngeal microbial signature associated with severe influenza in children: a retrospective pilot study.

J Gen Virol 2017 10 8;98(10):2425-2437. Epub 2017 Sep 8.

5​Centre National de Reference Virus Influenzae, IAI, CBN, Groupement Hospitalier Nord, Lyon, France.

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http://dx.doi.org/10.1099/jgv.0.000920DOI Listing
October 2017

Evaluation of the innate immune responses to influenza and live-attenuated influenza vaccine infection in primary differentiated human nasal epithelial cells.

Vaccine 2017 10 28;35(45):6112-6121. Epub 2017 Sep 28.

W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore, MD, USA; Department of Environmental Health Sciences, Johns Hopkins University Bloomberg School of Public Health, Baltimore, MD, USA. Electronic address:

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http://dx.doi.org/10.1016/j.vaccine.2017.09.058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5647870PMC
October 2017

Ebola virus glycoprotein directly triggers T lymphocyte death despite of the lack of infection.

PLoS Pathog 2017 May 22;13(5):e1006397. Epub 2017 May 22.

Department of Pathology, University of Texas Medical Branch, Galveston, Texas, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1006397DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5456411PMC
May 2017

FCGR2C Polymorphisms Associated with HIV-1 Vaccine Protection Are Linked to Altered Gene Expression of Fc-γ Receptors in Human B Cells.

PLoS One 2016 25;11(3):e0152425. Epub 2016 Mar 25.

Department of Microbiology, School of Medicine, University of Washington, Seattle, Washington, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0152425PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4807760PMC
August 2016

Genomic Signatures of Emerging Viruses: A New Era of Systems Epidemiology.

Cell Host Microbe 2016 May;19(5):611-8

Department of Microbiology, University of Washington, 960 Republican Street, Seattle, WA 98109, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2016.04.016DOI Listing
May 2016

SIV Infection of Lung Macrophages.

PLoS One 2015 1;10(5):e0125500. Epub 2015 May 1.

Nebraska Center for Virology, School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, Nebraska, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0125500PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416753PMC
February 2016

Sequencing, annotation and analysis of the Syrian hamster (Mesocricetus auratus) transcriptome.

PLoS One 2014 14;9(11):e112617. Epub 2014 Nov 14.

Department of Microbiology, University of Washington, Seattle, Washington, United States of America; Washington National Primate Research Center, University of Washington, Seattle, Washington, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0112617PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4232415PMC
December 2015

The 1918 Influenza Virus PB2 Protein Enhances Virulence through the Disruption of Inflammatory and Wnt-Mediated Signaling in Mice.

J Virol 2015 Dec 9;90(5):2240-53. Epub 2015 Dec 9.

Department of Microbiology, University of Washington, Seattle, Washington, USA Washington National Primate Research Center, University of Washington, Seattle, Washington, USA

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http://dx.doi.org/10.1128/JVI.02974-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4810726PMC
December 2015

Antioxidants Complement the Requirement for Protein Chaperone Function to Maintain β-Cell Function and Glucose Homeostasis.

Diabetes 2015 Aug 20;64(8):2892-904. Epub 2015 Mar 20.

Degenerative Diseases Program, Sanford-Burnham Medical Research Institute, La Jolla, CA Department of Biological Chemistry, University of Michigan Medical Center, Ann Arbor, MI Department of Internal Medicine, University of Michigan Medical Center, Ann Arbor, MI

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http://dx.doi.org/10.2337/db14-1357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4512214PMC
August 2015

Gene expression signatures as a therapeutic target for severe H7N9 influenza - what do we know so far?

Expert Opin Ther Targets 2015 Apr 20;19(4):447-50. Epub 2015 Jan 20.

University of Washington , Seattle, WA , USA .

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http://www.tandfonline.com/doi/full/10.1517/14728222.2015.10
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http://dx.doi.org/10.1517/14728222.2015.1006198DOI Listing
April 2015

Delayed inflammatory and cell death responses are associated with reduced pathogenicity in Lujo virus-infected cynomolgus macaques.

J Virol 2015 Mar 17;89(5):2543-52. Epub 2014 Dec 17.

Department of Microbiology, University of Washington, Seattle, Washington, USA Washington National Primate Research Center, Seattle, Washington, USA

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http://dx.doi.org/10.1128/JVI.02246-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4325716PMC
March 2015

Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR).

Nucleic Acids Res 2015 Jan 11;43(Database issue):D737-42. Epub 2014 Nov 11.

Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY 10065, USA Institute for Computational Biology (ICB), Weill Cornell Medical College, New York, NY 10065, USA Feil Family Brain and Mind Research Institute (BMRI), Weill Cornell Medical College, New York, NY 10065, USA

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http://dx.doi.org/10.1093/nar/gku1110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4383927PMC
January 2015

Multiple low-dose challenges in a rhesus macaque AIDS vaccine trial result in an evolving host response that affects protective outcome.

Clin Vaccine Immunol 2014 Dec 1;21(12):1650-60. Epub 2014 Oct 1.

Department of Microbiology, University of Washington, Seattle, Washington, USA Washington National Primate Research Center, University of Washington, Seattle, Washington, USA

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http://dx.doi.org/10.1128/CVI.00455-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248781PMC
December 2014

Assessment and improvement of Indian-origin rhesus macaque and Mauritian-origin cynomolgus macaque genome annotations using deep transcriptome sequencing data.

J Med Primatol 2014 Oct 8;43(5):317-28. Epub 2014 May 8.

Department of Microbiology, University of Washington, Seattle, WA, USA; Washington National Primate Research Center, Seattle, WA, USA.

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http://dx.doi.org/10.1111/jmp.12125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4176519PMC
October 2014

A proteomic glimpse into the initial global epigenetic changes during HIV infection.

Proteomics 2014 Oct 5;14(19):2226-30. Epub 2014 Sep 5.

Department of Molecular Biology, Princeton University, Princeton, NJ, USA.

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http://dx.doi.org/10.1002/pmic.201400116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4198388PMC
October 2014

Enabling large-scale next-generation sequence assembly with Blacklight.

Concurr Comput 2014 Sep;26(13):2157-2166

Pittsburgh Supercomputing Center, Carnegie Mellon University, 300 S. Craig St. Pittsburgh, PA, 15213 USA.

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http://doi.wiley.com/10.1002/cpe.3231
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http://dx.doi.org/10.1002/cpe.3231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4185199PMC
September 2014

Deep sequencing of HIV-infected cells: insights into nascent transcription and host-directed therapy.

J Virol 2014 Aug 21;88(16):8768-82. Epub 2014 May 21.

Department of Microbiology, University of Washington, Seattle, Washington, USA Washington National Primate Research Center, Seattle, Washington, USA

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http://jvi.asm.org/content/88/16/8768.full.pdf
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http://jvi.asm.org/cgi/doi/10.1128/JVI.00768-14
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http://dx.doi.org/10.1128/JVI.00768-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136300PMC
August 2014

Infection with MERS-CoV causes lethal pneumonia in the common marmoset.

PLoS Pathog 2014 Aug 21;10(8):e1004250. Epub 2014 Aug 21.

Virus Ecology Unit, Laboratory of Virology, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rocky Mountain Laboratories, Hamilton, Montana, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1004250DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4140844PMC
August 2014

Genomic profiling of collaborative cross founder mice infected with respiratory viruses reveals novel transcripts and infection-related strain-specific gene and isoform expression.

G3 (Bethesda) 2014 Jun 5;4(8):1429-44. Epub 2014 Jun 5.

Department of Microbiology, School of Medicine, University of Washington, Seattle, Washington Pacific Northwest Regional Center of Excellence for Biodefense and Emerging Infectious Diseases Research, Portland, Oregon

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http://dx.doi.org/10.1534/g3.114.011759DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132174PMC
June 2014

Moving H5N1 studies into the era of systems biology.

Virus Res 2013 Dec 14;178(1):151-67. Epub 2013 Mar 14.

Department of Microbiology, School of Medicine, University of Washington, Seattle, WA 98195, United States.

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https://linkinghub.elsevier.com/retrieve/pii/S01681702130007
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http://dx.doi.org/10.1016/j.virusres.2013.02.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3834220PMC
December 2013

Systems approaches to influenza-virus host interactions and the pathogenesis of highly virulent and pandemic viruses.

Semin Immunol 2013 Oct 5;25(3):228-39. Epub 2012 Dec 5.

Department of Microbiology, School of Medicine, and Washington National Primate Research Center, University of Washington, Seattle, WA 98195-8070, USA.

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http://dx.doi.org/10.1016/j.smim.2012.11.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3596458PMC
October 2013

Drug repurposing: a better approach for infectious disease drug discovery?

Curr Opin Immunol 2013 Oct 5;25(5):588-92. Epub 2013 Sep 5.

Department of Microbiology, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1016/j.coi.2013.08.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4015799PMC
October 2013

Treatment with interferon-α2b and ribavirin improves outcome in MERS-CoV-infected rhesus macaques.

Nat Med 2013 Oct 8;19(10):1313-7. Epub 2013 Sep 8.

Disease Modeling and Transmission Unit, Laboratory of Virology, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Rocky Mountain Laboratories, Hamilton, Montana, USA.

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http://dx.doi.org/10.1038/nm.3362DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4093902PMC
October 2013

Middle East respiratory syndrome coronavirus (MERS-CoV) causes transient lower respiratory tract infection in rhesus macaques.

Proc Natl Acad Sci U S A 2013 Oct 23;110(41):16598-603. Epub 2013 Sep 23.

Laboratory of Virology, Rocky Mountain Veterinary Branch, and Microscopy Unit, Research Technologies Branch, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, MT 59840.

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http://dx.doi.org/10.1073/pnas.1310744110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3799368PMC
October 2013

Playing the waiting game.

Authors:
Michael G Katze

Curr Opin Virol 2013 Aug 6;3(4):377-9. Epub 2013 Jul 6.

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http://dx.doi.org/10.1016/j.coviro.2013.06.009DOI Listing
August 2013

Mathematical models of viral latency.

Curr Opin Virol 2013 Aug 26;3(4):402-7. Epub 2013 Jul 26.

Department of Microbiology, University of Washington, Box 358070, Seattle, WA 98195-8070, USA. Electronic address:

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http://dx.doi.org/10.1016/j.coviro.2013.06.015DOI Listing
August 2013

Systems virology: host-directed approaches to viral pathogenesis and drug targeting.

Nat Rev Microbiol 2013 Jul 3;11(7):455-66. Epub 2013 Jun 3.

Department of Microbiology and Washington National Primate Research Center, University of Washington, Box 358070, Seattle, Washington 98195, USA.

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http://search.proquest.com/openview/5f852ad222203d709cd8e678
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http://www.nature.com/doifinder/10.1038/nrmicro3036
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http://dx.doi.org/10.1038/nrmicro3036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4028060PMC
July 2013

Protein co-expression network analysis (ProCoNA).

J Clin Bioinforma 2013 Jun 1;3(1):11. Epub 2013 Jun 1.

Division of Bioinformatics and Computational Biology, Oregon Health & Science University, 3181 S,W, Sam Jackson Park Rd, Portland, OR 97239, USA.

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http://dx.doi.org/10.1186/2043-9113-3-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3695838PMC
June 2013

Differential innate immune response programs in neuronal subtypes determine susceptibility to infection in the brain by positive-stranded RNA viruses.

Nat Med 2013 Apr 3;19(4):458-64. Epub 2013 Mar 3.

Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, Missouri, USA.

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http://dx.doi.org/10.1038/nm.3108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3618596PMC
April 2013

Antibodies are necessary for rVSV/ZEBOV-GP-mediated protection against lethal Ebola virus challenge in nonhuman primates.

Proc Natl Acad Sci U S A 2013 Jan 14;110(5):1893-8. Epub 2013 Jan 14.

Laboratory of Virology, Rocky Mountain Laboratories, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, MT 59840, USA.

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http://dx.doi.org/10.1073/pnas.1209591110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3562844PMC
January 2013

Compression of next-generation sequencing reads aided by highly efficient de novo assembly.

Nucleic Acids Res 2012 Dec 16;40(22):e171. Epub 2012 Aug 16.

Department of Computer Science and Engineering, University of Washington, Seattle, WA 98195-2350, USA.

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https://academic.oup.com/nar/article/40/22/e171/1137542
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http://dx.doi.org/10.1093/nar/gks754DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3526293PMC
December 2012

A new approach to bias correction in RNA-Seq.

Bioinformatics 2012 Apr 28;28(7):921-8. Epub 2012 Jan 28.

Department of Computer Science and Engineering, University of Washington, Seattle, WA 98195-2350, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bts055DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3315719PMC
April 2012

Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis.

BMC Syst Biol 2012 Apr 30;6:28. Epub 2012 Apr 30.

Computational Biology and Bioinformatics Group, Pacific Northwest National Laboratory, Richland, WA 99352, USA.

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http://dx.doi.org/10.1186/1752-0509-6-28DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3383540PMC
April 2012

Into the eye of the cytokine storm.

Microbiol Mol Biol Rev 2012 Mar;76(1):16-32

Department of Microbiology, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1128/MMBR.05015-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3294426PMC
March 2012

Virology: Influenza's tale of tails.

Nature 2012 Mar 14;483(7390):416-7. Epub 2012 Mar 14.

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http://dx.doi.org/10.1038/nature11034DOI Listing
March 2012

Dynamics of innate immunity are key to chronic immune activation in AIDS.

Curr Opin HIV AIDS 2012 Jan;7(1):79-85

Institut des Hautes Etudes Scientifiques, Bures sur Yvette, VaccineResearch Institute, INSERM U955, Institut Mondor de Recherche Biomédicale, Créteil, France.

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http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:land
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http://dx.doi.org/10.1097/COH.0b013e32834dde31DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4328998PMC
January 2012

Functional genomics reveals an essential and specific role for Stat1 in protection of the central nervous system following herpes simplex virus corneal infection.

J Virol 2011 Dec 12;85(24):12972-81. Epub 2011 Oct 12.

Dartmouth Medical School, Department of Microbiology and Immunology, 630E Borwell Building, One Medical Center Drive HB 7556, Lebanon, NH 03756, USA.

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http://dx.doi.org/10.1128/JVI.06032-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3233176PMC
December 2011

Differential microRNA expression and virulence of avian, 1918 reassortant, and reconstructed 1918 influenza A viruses.

Virology 2011 Dec 13;421(2):105-13. Epub 2011 Oct 13.

Department of Microbiology, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1016/j.virol.2011.09.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3210927PMC
December 2011

Host regulatory network response to infection with highly pathogenic H5N1 avian influenza virus.

J Virol 2011 Nov 24;85(21):10955-67. Epub 2011 Aug 24.

University of Wisconsin-Madison, School of Veterinary Medicine, Department of Pathobiological Sciences, Influenza Research Institute, 575 Science Drive, Madison, WI 53711, USA.

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http://dx.doi.org/10.1128/JVI.05792-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3194976PMC
November 2011

2009 pandemic H1N1 influenza virus causes disease and upregulation of genes related to inflammatory and immune responses, cell death, and lipid metabolism in pigs.

J Virol 2011 Nov 7;85(22):11626-37. Epub 2011 Sep 7.

Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, K224B Mosier Hall, Manhattan, KS 66506, USA.

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http://dx.doi.org/10.1128/JVI.05705-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3209293PMC
November 2011

Network-based prediction and analysis of HIV dependency factors.

PLoS Comput Biol 2011 Sep 22;7(9):e1002164. Epub 2011 Sep 22.

Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, Virginia, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1002164DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3178628PMC
September 2011