Michael Edmonson

Michael Edmonson

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Michael Edmonson

Michael Edmonson

Publications by authors named "Michael Edmonson"

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RNAIndel: discovering somatic coding indels from tumor RNA-Seq data.

Bioinformatics 2019 Oct 8. Epub 2019 Oct 8.

Computational Biology, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee, USA.

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http://dx.doi.org/10.1093/bioinformatics/btz753DOI Listing
October 2019

Inhibition of SF3B1 by molecules targeting the spliceosome results in massive aberrant exon skipping.

RNA 2018 08 29;24(8):1056-1066. Epub 2018 May 29.

Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee 38105-2794, USA.

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http://dx.doi.org/10.1261/rna.065383.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6049506PMC
August 2018

Genetic Risk for Subsequent Neoplasms Among Long-Term Survivors of Childhood Cancer.

J Clin Oncol 2018 07 30;36(20):2078-2087. Epub 2018 May 30.

Zhaoming Wang, Carmen L. Wilson, John Easton, Andrew Thrasher, Heather Mulder, Dale J. Hedges, Shuoguo Wang, Michael C. Rusch, Michael N. Edmonson, Jennifer Q. Lanctot, Eric Caron, Kyla Shelton, Kelsey Currie, Matthew Lear, Aman Patel, Celeste Rosencrance, Ying Shao, Bhavin Vadodaria, Donald Yergeau, Yadav Sapkota, Russell J. Brooke, Wonjong Moon, Evadnie Rampersaud, Xiaotu Ma, Ti-Cheng Chang, Stephen V. Rice, Cynthia Pepper, Xin Zhou, Xiang Chen, Wenan Chen, Matthew J. Ehrhardt, Matthew J. Krasin, Rebecca M. Howell, Nicholas S. Phillips, Courtney Lewis, Deokumar Srivastava, Ching-Hon Pui, Chimene A. Kesserwan, Gang Wu, Kim E. Nichols, James R. Downing, Melissa M. Hudson, Yutaka Yasui, Leslie L. Robison, and Jinghui Zhang, St Jude Children's Research Hospital, Memphis, TN; Qi Liu, University of Alberta, Edmonton, Alberta, Canada; Shawn Levy, Angela Jones, and Braden Boone, HudsonAlpha Institute for Biotechnology, Huntsville, AL; and Rebecca M. Howell, The University of Texas MD Anderson Cancer Center, Houston, TX.

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http://ascopubs.org/doi/10.1200/JCO.2018.77.8589
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http://dx.doi.org/10.1200/JCO.2018.77.8589DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6036620PMC
July 2018

The neoepitope landscape in pediatric cancers.

Genome Med 2017 08 31;9(1):78. Epub 2017 Aug 31.

Department of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, 38105, USA.

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http://dx.doi.org/10.1186/s13073-017-0468-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5577668PMC
August 2017

Germline Mutations in Predisposition Genes in Pediatric Cancer.

N Engl J Med 2015 Dec 18;373(24):2336-2346. Epub 2015 Nov 18.

Departments of Computational Biology (J.Z., G.W., M.N.E., D.H., X.M., X.Z., M.R.W., X.C., M.R., A.P., J.B.B., S.W.), Oncology (M.F.W., T.A.G., R.B.M., S.H.-D., R.N., E.Q., A.G., A.S.P., C.-H.P., K.E.N.), and Pathology (T.A.G., M.R.W., S.A.S., D.W.E., C.-H.P., J.R.D.) and the Pediatric Cancer Genome Project (J.Z., M.F.W., G.W., M.N.E., T.A.G., J.E., X.M., D.A.Y., B.V., X.C., R.B.M., S.H.-D., R.N., E.Q., S.A.S., M.R., A.P., J.B.B., S.W., M.S.W., A.G., D.W.E., A.S.P., C.-H.P., K.E.N., J.R.D.), St. Jude Children's Research Hospital, Memphis, TN; and the Department of Genetics and McDonnell Genome Institute, Washington University School of Medicine in St. Louis, St. Louis (L.D., E.R.M., R.K.W.).

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http://dx.doi.org/10.1056/NEJMoa1508054DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4734119PMC
December 2015

Germline ETV6 Mutations Confer Susceptibility to Acute Lymphoblastic Leukemia and Thrombocytopenia.

PLoS Genet 2015 Jun 23;11(6):e1005262. Epub 2015 Jun 23.

Department of Medicine, Memorial Sloan Kettering Cancer Center (MSKCC), New York, New York, United States of America; Cancer Biology and Genetics Program, Sloan Kettering Institute, New York, New York, United States of America; Weill Cornell Medical College, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1005262DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4477877PMC
June 2015

Mammalian adaptation of influenza A(H7N9) virus is limited by a narrow genetic bottleneck.

Nat Commun 2015 Apr 8;6:6553. Epub 2015 Apr 8.

1] Department of Infectious Diseases, St Jude Children's Research Hospital, 262 Danny Thomas Place, Memphis, Tennessee 38105-3678, USA [2] Department of Microbiology, Immunology &Biochemistry, College of Medicine, The University of Tennessee Health Science Center, Memphis, Tennessee 38163, USA.

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http://www.nature.com/articles/ncomms7553
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http://dx.doi.org/10.1038/ncomms7553DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4403340PMC
April 2015

The most informative spacing test effectively discovers biologically relevant outliers or multiple modes in expression.

Bioinformatics 2014 May 22;30(10):1400-8. Epub 2014 Jan 22.

Departments of Biostatistics, St. Jude Children's Research Hospital, Memphis, TN, USA, Institue of Mathematics, University of Silesia, Katowice, Poland, Department of Computational Biology and Department of Oncology, St. Jude Children's Research Hospital, Memphis, TN, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4068004PMC
May 2014

Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format.

Bioinformatics 2011 Mar 28;27(6):865-6. Epub 2011 Jan 28.

National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051333PMC
March 2011

Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB).

Genome Res 2007 Jul 24;17(7):1111-7. Epub 2007 May 24.

Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.5963407
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http://dx.doi.org/10.1101/gr.5963407DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1899122PMC
July 2007

Large-scale analysis of non-synonymous coding region single nucleotide polymorphisms.

Bioinformatics 2004 May 29;20(7):1006-14. Epub 2004 Jan 29.

Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bth029DOI Listing
May 2004

Bioinformatics tools for single nucleotide polymorphism discovery and analysis.

Ann N Y Acad Sci 2004 May;1020:101-9

Laboratory of Population Genetics, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1196/annals.1310.011DOI Listing
May 2004

Computation method to identify differential allelic gene expression and novel imprinted genes.

Bioinformatics 2003 May;19(8):952-5

Laboratory of Population Genetics, National Cancer Institute, Gaithersburg, MD 20877, USA.

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http://dx.doi.org/10.1093/bioinformatics/btg127DOI Listing
May 2003

A phylogenetic analysis identifies heterogeneity among hepatocellular carcinomas.

Hepatology 2002 Dec;36(6):1341-8

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, USA.

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http://dx.doi.org/10.1053/jhep.2002.37261DOI Listing
December 2002