Michael E Cusick

Michael E Cusick

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Michael E Cusick

Michael E Cusick

Publications by authors named "Michael E Cusick"

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A proteome-scale map of the human interactome network.

Cell 2014 Nov;159(5):1212-1226

Center for Cancer Systems Biology (CCSB) and Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Department of Genetics, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://llama.mshri.on.ca/publications/Rolland_Cell_2014.pdf
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http://linkinghub.elsevier.com/retrieve/pii/S009286741401422
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http://dx.doi.org/10.1016/j.cell.2014.10.050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4266588PMC
November 2014

Edgotype: a fundamental link between genotype and phenotype.

Curr Opin Genet Dev 2013 Dec 26;23(6):649-57. Epub 2013 Nov 26.

Center for Cancer Systems Biology (CCSB) and Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA; Department of Genetics, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1016/j.gde.2013.11.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3902775PMC
December 2013

Protein-protein interactions and networks: forward and reverse edgetics.

Methods Mol Biol 2011 ;759:197-213

Department of Cancer Biology, Center for Cancer Systems Biology (CCSB), Dana-Farber Cancer Institute, Boston, MA, USA.

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http://dx.doi.org/10.1007/978-1-61779-173-4_12DOI Listing
December 2011

Interactome networks and human disease.

Cell 2011 Mar;144(6):986-98

Center for Cancer Systems Biology and Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.

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http://dx.doi.org/10.1016/j.cell.2011.02.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102045PMC
March 2011

High-quality binary interactome mapping.

Methods Enzymol 2010 1;470:281-315. Epub 2010 Mar 1.

Center for Cancer Systems Biology (CCSB), Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1016/S0076-6879(10)70012-4DOI Listing
January 2011

A genome-wide gene function prediction resource for Drosophila melanogaster.

PLoS One 2010 Aug 12;5(8):e12139. Epub 2010 Aug 12.

Department of Cancer Biology, Center for Cancer Systems Biology (CCSB), Dana-Farber Cancer Institute, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0012139PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2920829PMC
August 2010

Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome.

Genome Res 2009 Dec 2;19(12):2334-42. Epub 2009 Oct 2.

Center for Cancer Systems Biology (CCSB) and Department of Cancer Biology, Dana-Farber Cancer Institute, and Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1101/gr.098640.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2792173PMC
December 2009

'Edgetic' perturbation of a C. elegans BCL2 ortholog.

Nat Methods 2009 Nov 25;6(11):843-9. Epub 2009 Oct 25.

Center for Cancer Systems Biology (CCSB) and Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.

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http://dx.doi.org/10.1038/nmeth.1394DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2865203PMC
November 2009

VirusMINT: a viral protein interaction database.

Nucleic Acids Res 2009 Jan 30;37(Database issue):D669-73. Epub 2008 Oct 30.

Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica, 00133 Rome, Italy.

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http://dx.doi.org/10.1093/nar/gkn739DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686573PMC
January 2009

Literature-curated protein interaction datasets.

Nat Methods 2009 Jan;6(1):39-46

Center for Cancer Systems Biology and Department of Cancer Biology, Dana-Farber Cancer Institute, 44 Binney Street, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1038/nmeth.1284DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2683745PMC
January 2009

Revisiting the Saccharomyces cerevisiae predicted ORFeome.

Genome Res 2008 Aug 23;18(8):1294-303. Epub 2008 May 23.

Center for Cancer Systems Biology (CCSB) and Department of Cancer Biology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1101/gr.076661.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2493439PMC
August 2008

Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing.

Nat Methods 2008 Jul 15;5(7):597-600. Epub 2008 Jun 15.

Center for Cancer Systems Biology, Department of Cancer Biology, Dana Farber Cancer Institute, 44 Binney Street, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1038/nmeth.1224DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2743938PMC
July 2008

Drug-target network.

Nat Biotechnol 2007 Oct;25(10):1119-26

Center for Cancer Systems Biology (CCSB), Harvard Medical School, 44 Binney St., Boston, Massachusetts 02115, USA.

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http://www.nature.com/articles/nbt1338
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http://dx.doi.org/10.1038/nbt1338DOI Listing
October 2007

Fas-activated serine/threonine phosphoprotein (FAST) is a regulator of alternative splicing.

Proc Natl Acad Sci U S A 2007 Jul 25;104(27):11370-5. Epub 2007 Jun 25.

Division of Rheumatology, Immunology, and Allergy, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1073/pnas.0704964104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2040905PMC
July 2007

The human disease network.

Proc Natl Acad Sci U S A 2007 May 14;104(21):8685-90. Epub 2007 May 14.

Center for Complex Network Research and Department of Physics, University of Notre Dame, Notre Dame, IN 46556, USA.

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http://dx.doi.org/10.1073/pnas.0701361104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1885563PMC
May 2007

hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes.

Genomics 2007 Mar 5;89(3):307-15. Epub 2007 Jan 5.

Center for Cancer Systems Biology and Department of Cancer Biology, Dana-Farber Cancer Institute, and Department of Genetics, Harvard Medical School, Boston, MA 02115, USA.

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http://dx.doi.org/10.1016/j.ygeno.2006.11.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4647941PMC
March 2007

QUICKstep and GS-TAP: new moves for protein-interaction analysis.

Nat Methods 2006 Dec;3(12):975-6

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http://dx.doi.org/10.1038/nmeth1206-975DOI Listing
December 2006

Yeast Protein Interactome topology provides framework for coordinated-functionality.

Nucleic Acids Res 2006 22;34(9):2812-9. Epub 2006 May 22.

Biometry Research Group, Department of Health and Human Services, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/nar/gkl325DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1464412PMC
June 2006

Interactome: gateway into systems biology.

Hum Mol Genet 2005 Oct 14;14 Spec No. 2:R171-81. Epub 2005 Sep 14.

Center for Cancer Systems Biology and Department of Cancer Biology, Dana-Farber Cancer Institute, 44 Binney Street, Boston, MA 02115, USA.

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http://dx.doi.org/10.1093/hmg/ddi335DOI Listing
October 2005

Effect of sampling on topology predictions of protein-protein interaction networks.

Nat Biotechnol 2005 Jul;23(7):839-44

Center for Cancer Systems Biology and Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.

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http://www.iecb.u-bordeaux.fr/teams/DUPUY/DupuylabSite/Publi
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http://www.nature.com/doifinder/10.1038/nbt1116
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http://dx.doi.org/10.1038/nbt1116DOI Listing
July 2005

Evidence for dynamically organized modularity in the yeast protein-protein interaction network.

Nature 2004 Jul 9;430(6995):88-93. Epub 2004 Jun 9.

Center for Cancer Systems Biology and Department of Cancer Biology, Dana-Farber Cancer Institute, and Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.

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http://www.nature.com/articles/nature02555
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http://dx.doi.org/10.1038/nature02555DOI Listing
July 2004