Publications by authors named "Michael C Schatz"

100Publications

Ribbon: Intuitive visualization for complex genomic variation.

Bioinformatics 2020 Aug 7. Epub 2020 Aug 7.

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btaa680DOI Listing
August 2020

In memory of James Taylor: the birth of Galaxy.

Genome Biol 2020 04 30;21(1):105. Epub 2020 Apr 30.

Departments of Computer Science and Biology, Johns Hopkins University, Baltimore, MD, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13059-020-02016-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7193333PMC
April 2020

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes.

Nat Commun 2020 03 18;11(1):1432. Epub 2020 Mar 18.

Johns Hopkins University, Baltimore, MD, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41467-020-14998-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7080791PMC
March 2020

Recovering rearranged cancer chromosomes from karyotype graphs.

BMC Bioinformatics 2019 Dec 17;20(Suppl 20):641. Epub 2019 Dec 17.

Department of Computer Science, Johns Hopkins University, 3400 N. Charles st., Baltimore, 21210, MD, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-019-3208-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6915857PMC
December 2019

RaGOO: fast and accurate reference-guided scaffolding of draft genomes.

Genome Biol 2019 10 28;20(1):224. Epub 2019 Oct 28.

Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13059-019-1829-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6816165PMC
October 2019

Samovar: Single-Sample Mosaic Single-Nucleotide Variant Calling with Linked Reads.

iScience 2019 Aug 29;18:1-10. Epub 2019 May 29.

Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA; Department of Biology, Johns Hopkins University, Baltimore, MD, USA; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.isci.2019.05.037DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6609817PMC
August 2019

Addressing confounding artifacts in reconstruction of gene co-expression networks.

Genome Biol 2019 05 16;20(1):94. Epub 2019 May 16.

Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13059-019-1700-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6521369PMC
May 2019

Hypo-osmotic-like stress underlies general cellular defects of aneuploidy.

Nature 2019 06 8;570(7759):117-121. Epub 2019 May 8.

Center for Cell Dynamics, Department of Cell Biology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41586-019-1187-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6583789PMC
June 2019

A master regulator of regeneration.

Science 2019 03;363(6432):1152-1153

Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.aaw6258DOI Listing
March 2019

A multi-task convolutional deep neural network for variant calling in single molecule sequencing.

Nat Commun 2019 03 1;10(1):998. Epub 2019 Mar 1.

Department of Computer Science, Johns Hopkins University, Baltimore, 21218, MD, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41467-019-09025-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6397153PMC
March 2019

Graph genomes article collection.

Genome Biol 2019 02 1;20(1):25. Epub 2019 Feb 1.

Genome Biology, London, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13059-019-1636-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6357451PMC
February 2019

Genome-wide patterns of transposon proliferation in an evolutionary young hybrid fish.

Mol Ecol 2019 03 6;28(6):1491-1505. Epub 2019 Feb 6.

Institute for Biology and Environmental Sciences, Carl von Ossietzky University Oldenburg, Oldenburg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/mec.14969DOI Listing
March 2019

Publisher Correction: Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Nat Genet 2018 12;50(12):1754

Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign School of Integrative Biology Joint Center for Genomics and Biotechnology, National Sugarcane Engineering Technology Research Center, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Breeding and Multiple Utilization of Corps, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, China.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/s41588-018-0293-7
Publisher Site
http://dx.doi.org/10.1038/s41588-018-0293-7DOI Listing
December 2018

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Nat Genet 2018 11 8;50(11):1565-1573. Epub 2018 Oct 8.

Fujian Agriculture and Forestry University and University of Illinois at Urbana-Champaign School of Integrative Biology Joint Center for Genomics and Biotechnology, National Sugarcane Engineering Technology Research Center, Fujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology, Key Laboratory of Genetics, Breeding and Multiple Utilization of Corps, Ministry of Education, Fujian Agriculture and Forestry University, Fuzhou, China.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/s41588-018-0237-2
Publisher Site
http://dx.doi.org/10.1038/s41588-018-0237-2DOI Listing
November 2018

KBase: The United States Department of Energy Systems Biology Knowledgebase.

Nat Biotechnol 2018 07;36(7):566-569

Computer Science and Math, Computer Science Initiative, Brookhaven National Laboratory, Upton, New York, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nbt.4163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6870991PMC
July 2018

Precise detection of de novo single nucleotide variants in human genomes.

Proc Natl Acad Sci U S A 2018 05 7;115(21):5516-5521. Epub 2018 May 7.

Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, 62210 Morelos, México;

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1802244115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6003530PMC
May 2018

Accurate detection of complex structural variations using single-molecule sequencing.

Nat Methods 2018 06 30;15(6):461-468. Epub 2018 Apr 30.

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41592-018-0001-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5990442PMC
June 2018

Piercing the dark matter: bioinformatics of long-range sequencing and mapping.

Nat Rev Genet 2018 06;19(6):329-346

Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41576-018-0003-4DOI Listing
June 2018

Scikit-ribo Enables Accurate Estimation and Robust Modeling of Translation Dynamics at Codon Resolution.

Cell Syst 2018 Feb 17;6(2):180-191.e4. Epub 2018 Jan 17.

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA; Departments of Computer Science and Biology, Johns Hopkins University, Baltimore, MD 21211, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cels.2017.12.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5832574PMC
February 2018

LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning.

Comput Struct Biotechnol J 2017 9;15:478-484. Epub 2017 Nov 9.

Department of Computer Science, Johns Hopkins University, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.csbj.2017.10.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5711661PMC
November 2017

Erratum to: The advantages of SMRT sequencing.

Genome Biol 2017 08 16;18(1):156. Epub 2017 Aug 16.

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 11743, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13059-017-1295-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5559860PMC
August 2017

16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model.

Gigascience 2017 07;6(7):1-4

Department of Computer Science, Johns Hopkins University, Baltimore, MD 21218, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gigascience/gix045DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5570013PMC
July 2017

GenomeScope: fast reference-free genome profiling from short reads.

Bioinformatics 2017 Jul;33(14):2202-2204

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btx153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870704PMC
July 2017

Nanopore sequencing meets epigenetics.

Authors:
Michael C Schatz

Nat Methods 2017 03;14(4):347-348

Departments of Computer Science and Biology, Johns Hopkins University, Baltimore, Maryland, USA, and at the Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nmeth.4240DOI Listing
March 2017

The evolution of inflorescence diversity in the nightshades and heterochrony during meristem maturation.

Genome Res 2016 12 7;26(12):1676-1686. Epub 2016 Nov 7.

Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.207837.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5131819PMC
December 2016

Assemblytics: a web analytics tool for the detection of variants from an assembly.

Bioinformatics 2016 10 17;32(19):3021-3. Epub 2016 Jun 17.

Cold Spring Harbor Laboratory, Simons Center for Quantitative Biology, Cold Spring Harbor, NY, USA and Department of Computer Science, Johns Hopkins University, Baltimore, MD, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btw369DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6191160PMC
October 2016

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data.

Genome Biol 2015 Oct 22;16:235. Epub 2015 Oct 22.

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13059-015-0803-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4618857PMC
October 2015

Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome.

Genome Res 2015 Nov 7;25(11):1750-6. Epub 2015 Oct 7.

Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.191395.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617970PMC
November 2015

Biological data sciences in genome research.

Authors:
Michael C Schatz

Genome Res 2015 Oct;25(10):1417-22

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York 11724, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.191684.115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4579325PMC
October 2015

Metassembler: merging and optimizing de novo genome assemblies.

Genome Biol 2015 Sep 24;16:207. Epub 2015 Sep 24.

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s13059-015-0764-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4581417PMC
September 2015

Interactive analysis and assessment of single-cell copy-number variations.

Nat Methods 2015 Nov 7;12(11):1058-60. Epub 2015 Sep 7.

Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nmeth.3578DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4775251PMC
November 2015

Big Data: Astronomical or Genomical?

PLoS Biol 2015 Jul 7;13(7):e1002195. Epub 2015 Jul 7.

Carl R. Woese Institute for Genomic Biology, Department of Entomology, and Neuroscience Program, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pbio.1002195DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4494865PMC
July 2015

The challenge of small-scale repeats for indel discovery.

Front Bioeng Biotechnol 2015 26;3. Epub 2015 Jan 26.

Cold Spring Harbor Laboratory, Simons Center for Quantitative Biology, Cold Spring Harbor , New York, NY , USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fbioe.2015.00008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4306302PMC
February 2015

Reducing INDEL calling errors in whole genome and exome sequencing data.

Genome Med 2014 28;6(10):89. Epub 2014 Oct 28.

Stanley Institute for Cognitive Genomics, Cold Spring Harbor Laboratory, One Bungtown Road, Cold Spring Harbor, NY USA ; Stony Brook University, 100 Nicolls Rd, Stony Brook, NY USA.

View Article

Download full-text PDF

Source
http://schatzlab.cshl.edu/presentations/2014.11.08.Indel%20E
Web Search
http://genomemedicine.com/content/6/10/89
Publisher Site
http://dx.doi.org/10.1186/s13073-014-0089-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4240813PMC
November 2014

SplitMEM: a graphical algorithm for pan-genome analysis with suffix skips.

Bioinformatics 2014 Dec 13;30(24):3476-83. Epub 2014 Nov 13.

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA and Department of Computer Science, Stony Brook University, Stony Brook, NY 11794, USA Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA and Department of Computer Science, Stony Brook University, Stony Brook, NY 11794, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btu756DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4253837PMC
December 2014

Accurate de novo and transmitted indel detection in exome-capture data using microassembly.

Nat Methods 2014 Oct 17;11(10):1033-6. Epub 2014 Aug 17.

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nmeth.3069DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4180789PMC
October 2014

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Gigascience 2013 Jul 22;2(1):10. Epub 2013 Jul 22.

Genome Center, UC, Davis, CA 95616, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2047-217X-2-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3844414PMC
July 2013

The DNA60IFX contest.

Genome Biol 2013 Jun 28;14(6):124. Epub 2013 Jun 28.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2013-14-6-124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3706964PMC
June 2013

Aluminum tolerance in maize is associated with higher MATE1 gene copy number.

Proc Natl Acad Sci U S A 2013 Mar 11;110(13):5241-6. Epub 2013 Mar 11.

Robert W. Holley Center for Agriculture and Health, US Department of Agriculture-Agricultural Research Service, Cornell University, Ithaca, NY 14853, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1220766110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3612656PMC
March 2013

Computational thinking in the era of big data biology.

Authors:
Michael C Schatz

Genome Biol 2012 Nov 29;13(11):177. Epub 2012 Nov 29.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2012-13-11-177DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3580488PMC
November 2012

Genotyping in the cloud with Crossbow.

Curr Protoc Bioinformatics 2012 Sep;Chapter 15:Unit15.3

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/0471250953.bi1503s39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3465669PMC
September 2012

Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score.

Bioinformatics 2012 Aug 4;28(16):2097-105. Epub 2012 Jun 4.

Department of Computer Science, Stony Brook University, Stony Brook, NY, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/bts330DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3413383PMC
August 2012

Current challenges in de novo plant genome sequencing and assembly.

Genome Biol 2012 ;13(4):243

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb4015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3446297PMC
January 2013

The rise of a digital immune system.

Gigascience 2012 Jul 12;1(1). Epub 2012 Jul 12.

Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 11724, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2047-217X-1-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3617452PMC
July 2012

Rate of meristem maturation determines inflorescence architecture in tomato.

Proc Natl Acad Sci U S A 2012 Jan 27;109(2):639-44. Epub 2011 Dec 27.

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.1114963109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3258637PMC
January 2012

Quake: quality-aware detection and correction of sequencing errors.

Genome Biol 2010 29;11(11):R116. Epub 2010 Nov 29.

Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, and Department of Computer Science, University of Maryland, College Park, MD 20742, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2010-11-11-r116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3156955PMC
June 2011

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis.

PLoS Biol 2010 Sep 7;8(9). Epub 2010 Sep 7.

Avian Immunobiology Laboratory, Department of Animal and Poultry Sciences, Virginia Tech, Blacksburg, Virginia, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pbio.1000475DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2935454PMC
September 2010

The missing graphical user interface for genomics.

Authors:
Michael C Schatz

Genome Biol 2010 25;11(8):128. Epub 2010 Aug 25.

Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2010-11-8-128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2945776PMC
January 2011

Cloud computing and the DNA data race.

Nat Biotechnol 2010 Jul;28(7):691-3

Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nbt0710-691DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2904649PMC
July 2010

Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray.

Appl Environ Microbiol 2010 Aug 25;76(16):5636-8. Epub 2010 Jun 25.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1128/AEM.00303-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2918976PMC
August 2010

Assembly of large genomes using second-generation sequencing.

Genome Res 2010 Sep 27;20(9):1165-73. Epub 2010 May 27.

Center for Bioinformatics and Computational Biology, University of Maryland, College Park, Maryland 20742, USA.

View Article

Download full-text PDF

Source
http://genome.cshlp.org/cgi/doi/10.1101/gr.101360.109
Publisher Site
http://dx.doi.org/10.1101/gr.101360.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2928494PMC
September 2010

Optimizing Data Intensive GPGPU Computations for DNA Sequence Alignment.

Parallel Comput 2009 Aug;35(8):429-440

Center for Bioinformatics and Computational Biology, University of Maryland.

View Article

Download full-text PDF

Source
http://linkinghub.elsevier.com/retrieve/pii/S016781910900071
Publisher Site
http://dx.doi.org/10.1016/j.parco.2009.05.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2749273PMC
August 2009