Publications by authors named "Michael B Eisen"

112Publications

A phylogeny for the Drosophila montium species group: a model clade for comparative analyses.

Authors:
William R Conner Emily K Delaney Michael J Bronski Paul S Ginsberg Timothy B Wheeler Kelly M Richardson Brooke Peckenpaugh Kevin J Kim Masayoshi Watada Ary A Hoffmann Michael B Eisen Artyom Kopp Brandon S Cooper Michael Turelli

Mol Phylogenet Evol 2020 Dec 30:107061. Epub 2020 Dec 30.

Department of Evolution and Ecology, University of California, Davis, CA 95616, USA. Electronic address:

View Article and Find Full Text PDF
December 2020

Kinetic sculpting of the seven stripes of the gene.

Authors:
Augusto Berrocal Nicholas C Lammers Hernan G Garcia Michael B Eisen

Elife 2020 Dec 10;9. Epub 2020 Dec 10.

Department of Molecular and Cell Biology and HHMI, University of California, Berkeley, Berkeley, United States.

View Article and Find Full Text PDF
December 2020

Implementing a "publish, then review" model of publishing.

Authors:
Michael B Eisen Anna Akhmanova Timothy E Behrens Diane M Harper Detlef Weigel Mone Zaidi

Elife 2020 12 1;9. Epub 2020 Dec 1.

eLife, Cambridge, United Kingdom.

View Article and Find Full Text PDF
December 2020

We need to act now.

Authors:
Michael B Eisen

Elife 2020 06 5;9. Epub 2020 Jun 5.

Department of Molecular and Cell Biology and HHMI, University of California, Berkeley, Berkeley, United States.

View Article and Find Full Text PDF
June 2020

Whole Genome Sequences of 23 Species from the Species Group (Diptera: Drosophilidae): A Resource for Testing Evolutionary Hypotheses.

Authors:
Michael J Bronski Ciera C Martinez Holli A Weld Michael B Eisen

G3 (Bethesda) 2020 05 4;10(5):1443-1455. Epub 2020 May 4.

Department of Molecular and Cell Biology, University of California, Berkeley

View Article and Find Full Text PDF
May 2020

Publishing in the time of COVID-19.

Authors:
Michael B Eisen Anna Akhmanova Timothy E Behrens Detlef Weigel

Elife 2020 03 25;9. Epub 2020 Mar 25.

eLife, Cambridge, United Kingdom.

View Article and Find Full Text PDF
March 2020

Dynamic multifactor hubs interact transiently with sites of active transcription in embryos.

Authors:
Mustafa Mir Michael R Stadler Stephan A Ortiz Colleen E Hannon Melissa M Harrison Xavier Darzacq Michael B Eisen

Elife 2018 12 27;7. Epub 2018 Dec 27.

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States.

View Article and Find Full Text PDF
December 2018

Single Molecule Imaging in Live Embryos Using Lattice Light-Sheet Microscopy.

Authors:
Mustafa Mir Armando Reimer Michael Stadler Astou Tangara Anders S Hansen Dirk Hockemeyer Michael B Eisen Hernan Garcia Xavier Darzacq

Methods Mol Biol 2018 ;1814:541-559

Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA.

View Article and Find Full Text PDF
March 2019

Convergent evolution of gene expression in two high-toothed stickleback populations.

Authors:
James C Hart Nicholas A Ellis Michael B Eisen Craig T Miller

PLoS Genet 2018 06 13;14(6):e1007443. Epub 2018 Jun 13.

Department of Molecular and Cell Biology, University of California-Berkeley, CA, United States of America.

View Article and Find Full Text PDF
June 2018

Gene family innovation, conservation and loss on the animal stem lineage.

Authors:
Daniel J Richter Parinaz Fozouni Michael B Eisen Nicole King

Elife 2018 05 31;7. Epub 2018 May 31.

Department of Molecular and Cell Biology, Howard Hughes Medical Institute, University of California, Berkeley, Berkeley, United States.

View Article and Find Full Text PDF
May 2018

The ecology of the Drosophila-yeast mutualism in wineries.

Authors:
Allison S Quan Michael B Eisen

PLoS One 2018 16;13(5):e0196440. Epub 2018 May 16.

Department of Molecular and Cell Biology, University of California, Berkeley, California, United States of America.

View Article and Find Full Text PDF
August 2018

Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo.

Authors:
Jenna E Haines Michael B Eisen

PLoS Genet 2018 05 4;14(5):e1007367. Epub 2018 May 4.

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States of America.

View Article and Find Full Text PDF
May 2018

Rapid Global Spread of wRi-like Wolbachia across Multiple Drosophila.

Authors:
Michael Turelli Brandon S Cooper Kelly M Richardson Paul S Ginsberg Brooke Peckenpaugh Chenling X Antelope Kevin J Kim Michael R May Antoine Abrieux Derek A Wilson Michael J Bronski Brian R Moore Jian-Jun Gao Michael B Eisen Joanna C Chiu William R Conner Ary A Hoffmann

Curr Biol 2018 03 8;28(6):963-971.e8. Epub 2018 Mar 8.

School of BioSciences, Bio21 Institute, University of Melbourne, Parkville, Victoria, 3010, Australia. Electronic address:

View Article and Find Full Text PDF
March 2018

Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early embryo.

Authors:
Michael R Stadler Jenna E Haines Michael B Eisen

Elife 2017 11 17;6. Epub 2017 Nov 17.

Department of Molecular and Cell Biology, University of California, Berkeley, CA, United States.

View Article and Find Full Text PDF
November 2017

A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates.

Authors:
Jean-Louis Plouhinec Sofía Medina-Ruiz Caroline Borday Elsa Bernard Jean-Philippe Vert Michael B Eisen Richard M Harland Anne H Monsoro-Burq

PLoS Biol 2017 Oct 19;15(10):e2004045. Epub 2017 Oct 19.

Université Paris Sud, Université Paris Saclay, CNRS UMR 3347, INSERM U1021, Orsay, France.

View Article and Find Full Text PDF
October 2017

Atlas…t, patterns from every cell.

Authors:
Michael R Stadler Michael B Eisen

Science 2017 10;358(6360):172-173

Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.

View Article and Find Full Text PDF
October 2017

Dense Bicoid hubs accentuate binding along the morphogen gradient.

Authors:
Mustafa Mir Armando Reimer Jenna E Haines Xiao-Yong Li Michael Stadler Hernan Garcia Michael B Eisen Xavier Darzacq

Genes Dev 2017 09;31(17):1784-1794

Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, California, 94720, USA.

View Article and Find Full Text PDF
September 2017

Patterns of Genome-Wide Diversity and Population Structure in the Drosophila athabasca Species Complex.

Authors:
Karen M Wong Miller Ryan R Bracewell Michael B Eisen Doris Bachtrog

Mol Biol Evol 2017 08;34(8):1912-1923

Department of Integrative Biology, University of California Berkeley, Berkeley, CA.

View Article and Find Full Text PDF
August 2017

Genome-wide measurement of spatial expression in patterning mutants of .

Authors:
Peter A Combs Michael B Eisen

F1000Res 2017 12;6:41. Epub 2017 Jan 12.

Department of Molecular and Cell Biology and Howard Hughes Medical Institute, University of California, Berkeley, USA.

View Article and Find Full Text PDF
January 2017

Stable Host Gene Expression in the Gut of Adult Drosophila melanogaster with Different Bacterial Mono-Associations.

Authors:
Carolyn Elya Vivian Zhang William B Ludington Michael B Eisen

PLoS One 2016 29;11(11):e0167357. Epub 2016 Nov 29.

Department of Molecular and Cell Biology, University of California, Berkeley, California, United States of America.

View Article and Find Full Text PDF
June 2017