Publications by authors named "Miaohua Zhang"

13Publications

A comparative encyclopedia of DNA elements in the mouse genome.

Authors:
Feng Yue Yong Cheng Alessandra Breschi Jeff Vierstra Weisheng Wu Tyrone Ryba Richard Sandstrom Zhihai Ma Carrie Davis Benjamin D Pope Yin Shen Dmitri D Pervouchine Sarah Djebali Robert E Thurman Rajinder Kaul Eric Rynes Anthony Kirilusha Georgi K Marinov Brian A Williams Diane Trout Henry Amrhein Katherine Fisher-Aylor Igor Antoshechkin Gilberto DeSalvo Lei-Hoon See Meagan Fastuca Jorg Drenkow Chris Zaleski Alex Dobin Pablo Prieto Julien Lagarde Giovanni Bussotti Andrea Tanzer Olgert Denas Kanwei Li M A Bender Miaohua Zhang Rachel Byron Mark T Groudine David McCleary Long Pham Zhen Ye Samantha Kuan Lee Edsall Yi-Chieh Wu Matthew D Rasmussen Mukul S Bansal Manolis Kellis Cheryl A Keller Christapher S Morrissey Tejaswini Mishra Deepti Jain Nergiz Dogan Robert S Harris Philip Cayting Trupti Kawli Alan P Boyle Ghia Euskirchen Anshul Kundaje Shin Lin Yiing Lin Camden Jansen Venkat S Malladi Melissa S Cline Drew T Erickson Vanessa M Kirkup Katrina Learned Cricket A Sloan Kate R Rosenbloom Beatriz Lacerda de Sousa Kathryn Beal Miguel Pignatelli Paul Flicek Jin Lian Tamer Kahveci Dongwon Lee W James Kent Miguel Ramalho Santos Javier Herrero Cedric Notredame Audra Johnson Shinny Vong Kristen Lee Daniel Bates Fidencio Neri Morgan Diegel Theresa Canfield Peter J Sabo Matthew S Wilken Thomas A Reh Erika Giste Anthony Shafer Tanya Kutyavin Eric Haugen Douglas Dunn Alex P Reynolds Shane Neph Richard Humbert R Scott Hansen Marella De Bruijn Licia Selleri Alexander Rudensky Steven Josefowicz Robert Samstein Evan E Eichler Stuart H Orkin Dana Levasseur Thalia Papayannopoulou Kai-Hsin Chang Arthur Skoultchi Srikanta Gosh Christine Disteche Piper Treuting Yanli Wang Mitchell J Weiss Gerd A Blobel Xiaoyi Cao Sheng Zhong Ting Wang Peter J Good Rebecca F Lowdon Leslie B Adams Xiao-Qiao Zhou Michael J Pazin Elise A Feingold Barbara Wold James Taylor Ali Mortazavi Sherman M Weissman John A Stamatoyannopoulos Michael P Snyder Roderic Guigo Thomas R Gingeras David M Gilbert Ross C Hardison Michael A Beer Bing Ren

Nature 2014 Nov;515(7527):355-64

Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature13992DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4266106PMC
November 2014

Distributed dictionary learning for sparse representation in sensor networks.

IEEE Trans Image Process 2014 Jun 10;23(6):2528-41. Epub 2014 Apr 10.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1109/TIP.2014.2316373DOI Listing
June 2014

Robust ellipse fitting based on sparse combination of data points.

IEEE Trans Image Process 2013 Jun 11;22(6):2207-18. Epub 2013 Feb 11.

School of Automation and Information Engineering, Xi'an University of Technology, Xi'an 710048, China.

View Article

Download full-text PDF

Source
http://ieeexplore.ieee.org/document/6459596/
Publisher Site
http://dx.doi.org/10.1109/TIP.2013.2246518DOI Listing
June 2013

Multiple nucleotide preferences determine cleavage-site recognition by the HIV-1 and M-MuLV RNases H.

J Mol Biol 2010 Mar 1;397(1):161-78. Epub 2010 Feb 1.

Department of Microbiology, School of Medicine, Box 357242, University of Washington, Seattle, WA 98195, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmb.2010.01.059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2830385PMC
March 2010

Preferred sequences within a defined cleavage window specify DNA 3' end-directed cleavages by retroviral RNases H.

J Biol Chem 2009 Nov 24;284(47):32225-38. Epub 2009 Sep 24.

Department of Microbiology, School of Medicine, University of Washington, Seattle, Washington 98195, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/jbc.M109.043158DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2781635PMC
November 2009

Substitution of alanine for tyrosine-64 in the fingers subdomain of M-MuLV reverse transcriptase impairs strand displacement synthesis and blocks viral replication in vivo.

Virology 2007 Sep 29;366(2):361-76. Epub 2007 May 29.

Department of Microbiology, School of Medicine, Box 357242, University of Washington, Seattle, WA 98195, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.virol.2007.04.028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2045069PMC
September 2007

Sequence, distance, and accessibility are determinants of 5'-end-directed cleavages by retroviral RNases H.

J Biol Chem 2006 Jan 22;281(4):1943-55. Epub 2005 Nov 22.

Department of Microbiology, School of Medicine, University of Washington, Seattle, WA 98195, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1074/jbc.M510504200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1360142PMC
January 2006

Recognition of internal cleavage sites by retroviral RNases H.

J Mol Biol 2004 Nov;344(3):635-52

Department of Microbiology, Box 357242, School of Medicine, University of Washington, Seattle, WA 98195-7242, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmb.2004.09.081DOI Listing
November 2004

Specific cleavages by RNase H facilitate initiation of plus-strand RNA synthesis by Moloney murine leukemia virus.

J Virol 2003 May;77(9):5275-85

Department of Microbiology, School of Medicine, University of Washington, Seattle 98195-7242, USA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153992PMC
http://dx.doi.org/10.1128/jvi.77.9.5275-5285.2003DOI Listing
May 2003

Evidence that DNase I hypersensitive site 5 of the human beta-globin locus control region functions as a chromosomal insulator in transgenic mice.

Nucleic Acids Res 2002 Jun;30(11):2484-91

Division of Medical Genetics, Box 357720, Department of Medicine, University of Washington Medical School, Seattle, WA 98195, USA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC117184PMC
http://dx.doi.org/10.1093/nar/30.11.2484DOI Listing
June 2002