Mengjie Chen

Mengjie Chen

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Mengjie Chen

Publications by authors named "Mengjie Chen"

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SNV identification from single-cell RNA sequencing data.

Hum Mol Genet 2019 Aug 27. Epub 2019 Aug 27.

Department of Biostatistics, University of Michigan Medical School, Ann Arbor, Michigan, USA.

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http://dx.doi.org/10.1093/hmg/ddz207DOI Listing
August 2019

Imaging-guided focused ultrasound-induced thermal and sonodynamic effects of nanosonosensitizers for synergistic enhancement of glioblastoma therapy.

Biomater Sci 2019 Jun;7(7):3007-3015

Paul C. Lauterbur Research Center for Biomedical Imaging, Institute of Biomedical and Health Engineering, Shenzhen Institutes of Advance Technology, Chinese Academy of Sciences, Shenzhen 518055, P. R. China.

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http://dx.doi.org/10.1039/c9bm00292hDOI Listing
June 2019

CoMM: a collaborative mixed model to dissecting genetic contributions to complex traits by leveraging regulatory information.

Bioinformatics 2019 May;35(10):1644-1652

Centre for Quantitative Medicine, Program in Health Services and Systems Research, Duke-NUS Medical School, Singapore.

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https://academic.oup.com/bioinformatics/advance-article/doi/
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http://dx.doi.org/10.1093/bioinformatics/bty865DOI Listing
May 2019

On-Demand Detaching Nanosystem for the Spatiotemporal Control of Cancer Theranostics.

ACS Appl Mater Interfaces 2019 May 23;11(18):16285-16295. Epub 2019 Apr 23.

State Key Laboratory of High Performance Ceramics and Superfine Microstructures, Shanghai Institute of Ceramics , Chinese Academy of Sciences , Shanghai , 200050 , People's Republic of China.

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http://dx.doi.org/10.1021/acsami.9b02062DOI Listing
May 2019

Effects of resveratrol on regulation on UCP2 and cardiac function in diabetic rats.

J Physiol Biochem 2019 Feb 17;75(1):39-51. Epub 2018 Sep 17.

Department of Cardiovascular Medicine, The Second Affiliated Hospital, Xi'an Jiaotong University, Xi'an, 710000, China.

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http://link.springer.com/10.1007/s13105-018-0648-7
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http://dx.doi.org/10.1007/s13105-018-0648-7DOI Listing
February 2019

VIPER: variability-preserving imputation for accurate gene expression recovery in single-cell RNA sequencing studies.

Genome Biol 2018 11 12;19(1):196. Epub 2018 Nov 12.

Department of Biostatistics, University of Michigan, Ann Arbor, MI, 48109, USA.

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https://genomebiology.biomedcentral.com/articles/10.1186/s13
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http://dx.doi.org/10.1186/s13059-018-1575-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6233584PMC
November 2018

Pt alloy nanoparticles decorated on large-size nitrogen-doped graphene tubes for highly stable oxygen-reduction catalysts.

Nanoscale 2018 Sep;10(36):17318-17326

Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York, Buffalo, New York 14260, USA.

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http://dx.doi.org/10.1039/c8nr05888aDOI Listing
September 2018

Prediction and identification of human leukocyte antigen-A2-restricted cytotoxic T lymphocyte epitope peptides from the human papillomavirus 58 E7 protein.

Oncol Lett 2018 Aug 1;16(2):2003-2008. Epub 2018 Jun 1.

Gynecologist Tumor Department, Affiliated Tumor Hospital of Guangxi Medical University, Nanning, Guangxi Zhuang Autonomous Region 530021, P.R. China.

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http://dx.doi.org/10.3892/ol.2018.8875DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6036542PMC
August 2018

Optimization of the microwave-assisted enzymatic extraction of Rosa roxburghii Tratt. polysaccharides using response surface methodology and its antioxidant and α-d-glucosidase inhibitory activity.

Int J Biol Macromol 2018 Jun 2;112:473-482. Epub 2018 Feb 2.

School of Pharmacy, Jilin University, Changchun, Jilin 130021, PR China. Electronic address:

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http://dx.doi.org/10.1016/j.ijbiomac.2018.02.003DOI Listing
June 2018

Clinical study of a CT evaluation model combined with serum CA125 in predicting the treatment of newly diagnosed advanced epithelial ovarian cancer.

J Ovarian Res 2018 Jun 18;11(1):49. Epub 2018 Jun 18.

Department of Gynecologic Oncology, Affiliated Tumor Hospital of Guangxi Medical University, 71 Hedi Road, Qingxiu District, Nanning, Guangxi, 530021, People's Republic of China.

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http://dx.doi.org/10.1186/s13048-018-0422-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6006670PMC
June 2018

P2Y6 regulates cytoskeleton reorganization and cell migration of C2C12 myoblasts via ROCK pathway.

J Cell Biochem 2018 02 7;119(2):1889-1898. Epub 2017 Sep 7.

Department of Otorhinolaryngology and Head and Neck Surgery, Changhai Hospital, Second Military Medical University, Shanghai, China.

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http://dx.doi.org/10.1002/jcb.26350DOI Listing
February 2018

Prediagnostic Smoking Is Associated with Binary and Quantitative Measures of ER Protein and mRNA Expression in Breast Tumors.

Cancer Epidemiol Biomarkers Prev 2018 01 13;27(1):67-74. Epub 2017 Nov 13.

Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, North Carolina.

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http://dx.doi.org/10.1158/1055-9965.EPI-17-0404DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5760366PMC
January 2018

Facile Synthesis of ZnS/N,S Co-doped Carbon Composite from Zinc Metal Complex for High-Performance Sodium-Ion Batteries.

ACS Appl Mater Interfaces 2018 Jan 28;10(1):704-712. Epub 2017 Dec 28.

Department of Chemistry, University of Missouri-Kansas City , Kansas City, Missouri 64110, United States.

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http://pubs.acs.org/doi/10.1021/acsami.7b15659
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http://dx.doi.org/10.1021/acsami.7b15659DOI Listing
January 2018

Controlling for Confounding Effects in Single Cell RNA Sequencing Studies Using both Control and Target Genes.

Sci Rep 2017 10 19;7(1):13587. Epub 2017 Oct 19.

Department of Biostatistics, University of Michigan, Ann Arbor, MI 48109, USA.

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http://dx.doi.org/10.1038/s41598-017-13665-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5648789PMC
October 2017

Preparation and Oxidation Stability Evaluation of Tea Polyphenols-Loaded Inverse Micro-Emulsion.

J Food Sci 2017 May 24;82(5):1247-1253. Epub 2017 Mar 24.

School of Agriculture and Biology, Shanghai Jiao Tong Univ., Shanghai, China.

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http://dx.doi.org/10.1111/1750-3841.13689DOI Listing
May 2017

Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations.

Nat Commun 2017 05 26;8:15290. Epub 2017 May 26.

Department of Etiology and Carcinogenesis, National Cancer Center/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, No.17 Panjiayuan Nanli, Chaoyang District, Beijing 100021, China.

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http://dx.doi.org/10.1038/ncomms15290DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5477513PMC
May 2017

A recurrent mutation in bone morphogenetic proteins-2-inducible kinase gene is associated with developmental dysplasia of the hip.

Exp Ther Med 2017 May 8;13(5):1773-1778. Epub 2017 Mar 8.

Department of Orthopedics, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai 200062, P.R. China.

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http://dx.doi.org/10.3892/etm.2017.4191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5443164PMC
May 2017

SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling.

Genome Biol 2017 04 8;18(1):66. Epub 2017 Apr 8.

Section of Genetic Medicine, Department of Medicine, The University of Chicago, 900 East 57th Street, KCBD 3220A, Chicago, IL, 60637, USA.

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http://dx.doi.org/10.1186/s13059-017-1193-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5385048PMC
April 2017

Controlled delivery of icariin on small intestine submucosa for bone tissue engineering.

Mater Sci Eng C Mater Biol Appl 2017 Feb 14;71:260-267. Epub 2016 Oct 14.

Zhejiang Key Laboratory of Pathophysiology, School of Medicine, Ningbo University, Ningbo, Zhejiang 315211, People's Republic of China. Electronic address:

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http://dx.doi.org/10.1016/j.msec.2016.10.016DOI Listing
February 2017

Self-targeted salinomycin-loaded DSPE-PEG-methotrexate nanomicelles for targeting both head and neck squamous cell carcinoma cancer cells and cancer stem cells.

Nanomedicine (Lond) 2017 Feb 17;12(4):295-315. Epub 2017 Jan 17.

Department of Otolaryngology Head & Neck Surgery, Shanghai Changhai Hospital, the Second Military Medical University, 168 Changhai Road, Shanghai 200433, China.

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http://dx.doi.org/10.2217/nnm-2016-0382DOI Listing
February 2017

Free flap combined with pectoralis major flap for reconstruction after total laryngopharyngectomy in patients with advanced hypopharyngeal carcinoma.

Acta Otolaryngol 2016 Aug 12;136(8):841-6. Epub 2016 Apr 12.

a Department of Otorhinolaryngology-Head and Neck Surgery , Changhai Hospital, Second Military Medical University , Shanghai , PR China.

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http://dx.doi.org/10.3109/00016489.2016.1164891DOI Listing
August 2016

Estimating DNA methylation levels by joint modeling of multiple methylation profiles from microarray data.

Biometrics 2016 06 4;72(2):354-63. Epub 2015 Oct 4.

Department of Biostatistics, Yale University, New Haven, Connecticut, 06520, U.S.A.

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http://dx.doi.org/10.1111/biom.12422DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4820364PMC
June 2016

Posterior Contraction Rates of the Phylogenetic Indian Buffet Processes.

Bayesian Anal 2016 Jun 5;11(2):477-497. Epub 2015 Jun 5.

University of North Carolina, Chapel Hill.

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http://dx.doi.org/10.1214/15-BA958DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4830498PMC
June 2016

Global copy number profiling of cancer genomes.

Bioinformatics 2016 03 16;32(6):926-8. Epub 2015 Nov 16.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, Department of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1093/bioinformatics/btv676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4907391PMC
March 2016

CHANGE POINT ANALYSIS OF HISTONE MODIFICATIONS REVEALS EPIGENETIC BLOCKS LINKING TO PHYSICAL DOMAINS.

Ann Appl Stat 2016 Mar 25;10(1):506-526. Epub 2016 Mar 25.

Department of Biostatistics, Yale School of Public Health, New Haven, CT 06520.

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http://dx.doi.org/10.1214/16-AOAS905DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4876974PMC
March 2016

Asymptotically Normal and Efficient Estimation of Covariate-Adjusted Gaussian Graphical Model.

J Am Stat Assoc 2016 Mar 5;111(513):394-406. Epub 2016 May 5.

Department of Statistics, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1080/01621459.2015.1010039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4974017PMC
March 2016

Identification of a panel of five serum miRNAs as a biomarker for Parkinson's disease.

Parkinsonism Relat Disord 2016 Jan 21;22:68-73. Epub 2015 Nov 21.

State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China; State Key Laboratory of Analytical Chemistry for Life Sciences and Collaborative Innovation Center of Chemistry for Life Sciences, Nanjing University, Nanjing, China. Electronic address:

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http://dx.doi.org/10.1016/j.parkreldis.2015.11.014DOI Listing
January 2016

Dual TNF-α/IL-12p40 Interference as a Strategy to Protect Against Colitis Based on miR-16 Precursors With Macrophage Targeting Vectors.

Mol Ther 2015 Oct 15;23(10):1611-21. Epub 2015 Jun 15.

State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China.

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http://dx.doi.org/10.1038/mt.2015.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817916PMC
October 2015

Association studies with imputed variants using expectation-maximization likelihood-ratio tests.

PLoS One 2014 10;9(11):e110679. Epub 2014 Nov 10.

Department of Biostatistics, University of North Carolina, Chapel Hill, North Carolina, United States of America; Department of Genetics, University of North Carolina, Chapel Hill, North Carolina, United States of America; Department of Computer Science, University of North Carolina, Chapel Hill, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0110679PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4226494PMC
July 2015

Admixture mapping analysis in the context of GWAS with GAW18 data.

BMC Proc 2014 17;8(Suppl 1):S3. Epub 2014 Jun 17.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA ; Department of Biostatistics, Yale School of Public Health, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1186/1753-6561-8-S1-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143627PMC
December 2014

Adjustment of familial relatedness in association test for rare variants.

BMC Proc 2014 17;8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S39. Epub 2014 Jun 17.

Department of Biostatistics, Yale School of Public Health, 60 College Street, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1186/1753-6561-8-S1-S39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143885PMC
December 2014

A penalized linear mixed model for genomic prediction using pedigree structures.

BMC Proc 2014 17;8(Suppl 1 Genetic Analysis Workshop 18Vanessa Olmo):S67. Epub 2014 Jun 17.

Department of Biostatistics, Yale School of Public Health, New Haven, CT 06520, USA ; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1186/1753-6561-8-S1-S67DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143686PMC
December 2014

SomatiCA: identifying, characterizing and quantifying somatic copy number aberrations from cancer genome sequencing data.

PLoS One 2013 12;8(11):e78143. Epub 2013 Nov 12.

Program of Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0078143PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3827077PMC
September 2014

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.

Authors:
Catherine A Brownstein Alan H Beggs Nils Homer Barry Merriman Timothy W Yu Katherine C Flannery Elizabeth T DeChene Meghan C Towne Sarah K Savage Emily N Price Ingrid A Holm Lovelace J Luquette Elaine Lyon Joseph Majzoub Peter Neupert David McCallie Peter Szolovits Huntington F Willard Nancy J Mendelsohn Renee Temme Richard S Finkel Sabrina W Yum Livija Medne Shamil R Sunyaev Ivan Adzhubey Christopher A Cassa Paul I W de Bakker Hatice Duzkale Piotr Dworzyński William Fairbrother Laurent Francioli Birgit H Funke Monica A Giovanni Robert E Handsaker Kasper Lage Matthew S Lebo Monkol Lek Ignaty Leshchiner Daniel G MacArthur Heather M McLaughlin Michael F Murray Tune H Pers Paz P Polak Soumya Raychaudhuri Heidi L Rehm Rachel Soemedi Nathan O Stitziel Sara Vestecka Jochen Supper Claudia Gugenmus Bernward Klocke Alexander Hahn Max Schubach Mortiz Menzel Saskia Biskup Peter Freisinger Mario Deng Martin Braun Sven Perner Richard J H Smith Janeen L Andorf Jian Huang Kelli Ryckman Val C Sheffield Edwin M Stone Thomas Bair E Ann Black-Ziegelbein Terry A Braun Benjamin Darbro Adam P DeLuca Diana L Kolbe Todd E Scheetz Aiden E Shearer Rama Sompallae Kai Wang Alexander G Bassuk Erik Edens Katherine Mathews Steven A Moore Oleg A Shchelochkov Pamela Trapane Aaron Bossler Colleen A Campbell Jonathan W Heusel Anne Kwitek Tara Maga Karin Panzer Thomas Wassink Douglas Van Daele Hela Azaiez Kevin Booth Nic Meyer Michael M Segal Marc S Williams Gerard Tromp Peter White Donald Corsmeier Sara Fitzgerald-Butt Gail Herman Devon Lamb-Thrush Kim L McBride David Newsom Christopher R Pierson Alexander T Rakowsky Aleš Maver Luca Lovrečić Anja Palandačić Borut Peterlin Ali Torkamani Anna Wedell Mikael Huss Andrey Alexeyenko Jessica M Lindvall Måns Magnusson Daniel Nilsson Henrik Stranneheim Fulya Taylan Christian Gilissen Alexander Hoischen Bregje van Bon Helger Yntema Marcel Nelen Weidong Zhang Jason Sager Lu Zhang Kathryn Blair Deniz Kural Michael Cariaso Greg G Lennon Asif Javed Saloni Agrawal Pauline C Ng Komal S Sandhu Shuba Krishna Vamsi Veeramachaneni Ofer Isakov Eran Halperin Eitan Friedman Noam Shomron Gustavo Glusman Jared C Roach Juan Caballero Hannah C Cox Denise Mauldin Seth A Ament Lee Rowen Daniel R Richards F Anthony San Lucas Manuel L Gonzalez-Garay C Thomas Caskey Yu Bai Ying Huang Fang Fang Yan Zhang Zhengyuan Wang Jorge Barrera Juan M Garcia-Lobo Domingo González-Lamuño Javier Llorca Maria C Rodriguez Ignacio Varela Martin G Reese Francisco M De La Vega Edward Kiruluta Michele Cargill Reece K Hart Jon M Sorenson Gholson J Lyon David A Stevenson Bruce E Bray Barry M Moore Karen Eilbeck Mark Yandell Hongyu Zhao Lin Hou Xiaowei Chen Xiting Yan Mengjie Chen Cong Li Can Yang Murat Gunel Peining Li Yong Kong Austin C Alexander Zayed I Albertyn Kym M Boycott Dennis E Bulman Paul M K Gordon A Micheil Innes Bartha M Knoppers Jacek Majewski Christian R Marshall Jillian S Parboosingh Sarah L Sawyer Mark E Samuels Jeremy Schwartzentruber Isaac S Kohane David M Margulies

Genome Biol 2014 Mar 25;15(3):R53. Epub 2014 Mar 25.

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http://dx.doi.org/10.1186/gb-2014-15-3-r53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073084PMC
March 2014

Tdrkh is essential for spermatogenesis and participates in primary piRNA biogenesis in the germline.

EMBO J 2013 Jul 28;32(13):1869-85. Epub 2013 May 28.

Yale Stem Cell Center, Yale University, New Haven, CT 06519, USA.

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http://dx.doi.org/10.1038/emboj.2013.121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3981179PMC
July 2013

A glucose-responsive controlled release system using glucose oxidase-gated mesoporous silica nanocontainers.

Chem Commun (Camb) 2012 Oct;48(76):9522-4

Shanghai Key Laboratory of Chemical Biology, School of Pharmacy, East China University of Science and Technology, Meilong Road 130, Shanghai 200237, China.

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http://dx.doi.org/10.1039/c2cc34290aDOI Listing
October 2012

Paclitaxel-loaded silk fibroin nanospheres.

J Biomed Mater Res A 2012 Jan 23;100(1):203-10. Epub 2011 Oct 23.

State Key Laboratory of Molecular Engineering of Polymers, Department of Macromolecular Science, Laboratory of Advanced Materials, Fudan University, Shanghai 200433, People's Republic of China.

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http://dx.doi.org/10.1002/jbm.a.33265DOI Listing
January 2012