Publications by authors named "Melissa Cline"

50Publications

Human genetics special issue on computational molecular medicine.

Hum Genet 2015 May;134(5):455-7

Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, Baltimore, USA,

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May 2015

A comparative encyclopedia of DNA elements in the mouse genome.

Authors:
Feng Yue Yong Cheng Alessandra Breschi Jeff Vierstra Weisheng Wu Tyrone Ryba Richard Sandstrom Zhihai Ma Carrie Davis Benjamin D Pope Yin Shen Dmitri D Pervouchine Sarah Djebali Robert E Thurman Rajinder Kaul Eric Rynes Anthony Kirilusha Georgi K Marinov Brian A Williams Diane Trout Henry Amrhein Katherine Fisher-Aylor Igor Antoshechkin Gilberto DeSalvo Lei-Hoon See Meagan Fastuca Jorg Drenkow Chris Zaleski Alex Dobin Pablo Prieto Julien Lagarde Giovanni Bussotti Andrea Tanzer Olgert Denas Kanwei Li M A Bender Miaohua Zhang Rachel Byron Mark T Groudine David McCleary Long Pham Zhen Ye Samantha Kuan Lee Edsall Yi-Chieh Wu Matthew D Rasmussen Mukul S Bansal Manolis Kellis Cheryl A Keller Christapher S Morrissey Tejaswini Mishra Deepti Jain Nergiz Dogan Robert S Harris Philip Cayting Trupti Kawli Alan P Boyle Ghia Euskirchen Anshul Kundaje Shin Lin Yiing Lin Camden Jansen Venkat S Malladi Melissa S Cline Drew T Erickson Vanessa M Kirkup Katrina Learned Cricket A Sloan Kate R Rosenbloom Beatriz Lacerda de Sousa Kathryn Beal Miguel Pignatelli Paul Flicek Jin Lian Tamer Kahveci Dongwon Lee W James Kent Miguel Ramalho Santos Javier Herrero Cedric Notredame Audra Johnson Shinny Vong Kristen Lee Daniel Bates Fidencio Neri Morgan Diegel Theresa Canfield Peter J Sabo Matthew S Wilken Thomas A Reh Erika Giste Anthony Shafer Tanya Kutyavin Eric Haugen Douglas Dunn Alex P Reynolds Shane Neph Richard Humbert R Scott Hansen Marella De Bruijn Licia Selleri Alexander Rudensky Steven Josefowicz Robert Samstein Evan E Eichler Stuart H Orkin Dana Levasseur Thalia Papayannopoulou Kai-Hsin Chang Arthur Skoultchi Srikanta Gosh Christine Disteche Piper Treuting Yanli Wang Mitchell J Weiss Gerd A Blobel Xiaoyi Cao Sheng Zhong Ting Wang Peter J Good Rebecca F Lowdon Leslie B Adams Xiao-Qiao Zhou Michael J Pazin Elise A Feingold Barbara Wold James Taylor Ali Mortazavi Sherman M Weissman John A Stamatoyannopoulos Michael P Snyder Roderic Guigo Thomas R Gingeras David M Gilbert Ross C Hardison Michael A Beer Bing Ren

Nature 2014 Nov;515(7527):355-64

Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.

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November 2014

The UCSC Cancer Genomics Browser: update 2015.

Nucleic Acids Res 2015 Jan 11;43(Database issue):D812-7. Epub 2014 Nov 11.

Center for Biomolecular Science and Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA

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January 2015

The Cancer Genomics Hub (CGHub): overcoming cancer through the power of torrential data.

Database (Oxford) 2014 29;2014. Epub 2014 Sep 29.

Biomolecular Engineering, School of Engineering, University of California Santa Cruz, Santa Cruz, CA, USA, Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA, Annai Systems Inc., 2100 Palomar Airport Road, Suite 210 Carlsbad, California 92011, USA, Cardinal Peak, LLC, 1380 Forest Park Circle, Suite 202 Lafayette, CO 80026, USA and Information Technology Services, University of California Santa Cruz (UCSC), Santa Cruz, CA 95064, USA.

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February 2015

RBPmap: a web server for mapping binding sites of RNA-binding proteins.

Nucleic Acids Res 2014 Jul 14;42(Web Server issue):W361-7. Epub 2014 May 14.

Department of Biology, Technion - Israel Institute of Technology, Technion City, Haifa 32000, Israel

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July 2014

The UCSC Genome Browser database: 2014 update.

Nucleic Acids Res 2014 Jan 21;42(Database issue):D764-70. Epub 2013 Nov 21.

Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), 1156 High Street, Santa Cruz, CA 95064, USA, Computational Biology Graduate Group, University of California Berkeley, Berkeley, CA 94720, USA, Department of Genetics, Stanford University School of Medicine, 3165 Porter Drive, Stanford, CA 94305, USA and Howard Hughes Medical Institute, Center for Biomolecular Science and Engineering, UCSC, 1156 High Street, Santa Cruz, CA 95064, USA.

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January 2014

Exploring TCGA Pan-Cancer data at the UCSC Cancer Genomics Browser.

Sci Rep 2013 Oct 2;3:2652. Epub 2013 Oct 2.

Center for Biomolecular Science and Engineering, University of California, Santa Cruz.

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October 2013

Splicing biomarkers of disease severity in myotonic dystrophy.

Ann Neurol 2013 Dec;74(6):862-72

Department of Neurology, University of Rochester Medical Center, Rochester, NY; Center for Neural Development and Disease, University of Rochester Medical Center, Rochester, NY.

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December 2013

Quaking and PTB control overlapping splicing regulatory networks during muscle cell differentiation.

RNA 2013 May 22;19(5):627-38. Epub 2013 Mar 22.

RNA Center, Department of Molecular, Cell, and Developmental Biology, Sinsheimer Labs, University of California, Santa Cruz, California 95064, USA.

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May 2013

Rbfox1 downregulation and altered calpain 3 splicing by FRG1 in a mouse model of Facioscapulohumeral muscular dystrophy (FSHD).

PLoS Genet 2013 3;9(1):e1003186. Epub 2013 Jan 3.

Dulbecco Telethon Institute and Division of Regenerative Medicine, San Raffaele Scientific Institute, Milano, Italy.

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May 2013

The UCSC Cancer Genomics Browser: update 2013.

Nucleic Acids Res 2013 Jan 29;41(Database issue):D949-54. Epub 2012 Oct 29.

Center for Biomolecular Science and Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA.

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January 2013