Melissa A Haendel

Melissa A Haendel

UNVERIFIED PROFILE

Are you Melissa A Haendel?   Register this Author

Register author
Melissa A Haendel

Melissa A Haendel

Publications by authors named "Melissa A Haendel"

Are you Melissa A Haendel?   Register this Author

53Publications

1920Reads

37Profile Views

An analysis and metric of reusable data licensing practices for biomedical resources.

PLoS One 2019 27;14(3):e0213090. Epub 2019 Mar 27.

Center for Genome Research and Biocomputing, Oregon State University, Corvallis, Oregon, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0213090PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6436688PMC
December 2019

New models for human disease from the International Mouse Phenotyping Consortium.

Mamm Genome 2019 Jun 24;30(5-6):143-150. Epub 2019 May 24.

William Harvey Research Institute, School of Medicine and Dentistry, Queen Mary University of London, London, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00335-019-09804-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6606664PMC
June 2019

Expansion of the Human Phenotype Ontology (HPO) knowledge base and resources.

Nucleic Acids Res 2019 Jan;47(D1):D1018-D1027

Monarch Initiative, monarchinitiative.org.

View Article

Download full-text PDF

Source
https://academic.oup.com/nar/advance-article/doi/10.1093/nar
Publisher Site
http://dx.doi.org/10.1093/nar/gky1105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324074PMC
January 2019

Classification, Ontology, and Precision Medicine.

N Engl J Med 2018 10;379(15):1452-1462

From the Oregon Clinical and Translational Research Institute, Oregon Health and Science University, Portland, and the Linus Pauling Institute and the Center for Genome Research and Biocomputing, Oregon State University, Corvallis (M.A.H.); Johns Hopkins University Schools of Medicine, Public Health, and Nursing, Baltimore (C.G.C.); and the Jackson Laboratory for Genomic Medicine and the Institute for Systems Genomics, University of Connecticut - both in Farmington (P.N.R.).

View Article

Download full-text PDF

Source
http://www.nejm.org/doi/10.1056/NEJMra1615014
Publisher Site
http://dx.doi.org/10.1056/NEJMra1615014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6503847PMC
October 2018

Matchmaker Exchange.

Curr Protoc Hum Genet 2017 10 18;95:9.31.1-9.31.15. Epub 2017 Oct 18.

The Broad Institute of MIT and Harvard, Cambridge, Massachusetts.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cphg.50DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6016856PMC
October 2017

Reproducible and reusable research: are journal data sharing policies meeting the mark?

PeerJ 2017 25;5:e3208. Epub 2017 Apr 25.

OHSU Library, Oregon Health & Science University, Portland, OR, United States.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7717/peerj.3208DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5407277PMC
April 2017

A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease.

Am J Hum Genet 2016 09 25;99(3):595-606. Epub 2016 Aug 25.

Institute for Medical and Human Genetics, Charité-Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin, Germany; Max Planck Institute for Molecular Genetics, Ihnestr. 63-73, 14195 Berlin, Germany; Berlin-Brandenburg Center for Regenerative Therapies (BCRT), Charité-Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin, Germany; Institute for Bioinformatics, Department of Mathematics and Computer Science, Freie Universität Berlin, Takustrasse, 14195 Berlin, Germany. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ajhg.2016.07.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011059PMC
September 2016

The Resource Identification Initiative: A Cultural Shift in Publishing.

J Comp Neurol 2016 Jan;524(1):8-22

Oregon Health & Science University (OHSU) Library, Department of Medical Informatics & Clinical Epidemiology, Portland, Oregon, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/cne.23913DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4684178PMC
January 2016

The Resource Identification Initiative: a cultural shift in publishing.

Brain Behav 2016 01 8;6(1):e00417. Epub 2015 Dec 8.

Department of Medical Informatics & Clinical Epidemiology OHSU Library Oregon Health and Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239 USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/brb3.417DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4834942PMC
January 2016

Disease insights through cross-species phenotype comparisons.

Mamm Genome 2015 Oct 20;26(9-10):548-55. Epub 2015 Jun 20.

Skarnes Faculty Group, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00335-015-9577-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602072PMC
October 2015

The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease.

Am J Hum Genet 2015 Jul 25;97(1):111-24. Epub 2015 Jun 25.

Institute for Medical and Human Genetics, Charité-Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin, Germany; Max Planck Institute for Molecular Genetics, Ihnestrasse 63-73, 14195 Berlin, Germany; Berlin Brandenburg Center for Regenerative Therapies, Charité-Universitätsmedizin Berlin, Augustenburger Platz 1, 13353 Berlin, Germany; Institute of Bioinformatics, Department of Mathematics and Computer Science, Freie Universität Berlin, Takustrasse 9, 14195 Berlin, Germany. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ajhg.2015.05.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572507PMC
July 2015

Clinical interpretation of CNVs with cross-species phenotype data.

J Med Genet 2014 Nov 3;51(11):766-772. Epub 2014 Oct 3.

Institute for Medical Genetics and Human Genetics, Charité-Universitätsmedizin Berlin,Berlin, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1136/jmedgenet-2014-102633DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4501634PMC
November 2014

Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology.

J Biomed Semantics 2014 11;5:34. Epub 2014 Aug 11.

Library and Department of Medical Informatics & Epidemiology, Oregon Health & Science University, Portland, OR, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-5-34DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4137724PMC
August 2014

The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio.

J Biomed Semantics 2014 Feb 25;5(1):12. Epub 2014 Feb 25.

ZFIN, 5291 University of Oregon, Eugene, OR 97403-5291, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-5-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3944782PMC
February 2014

Ontology based molecular signatures for immune cell types via gene expression analysis.

BMC Bioinformatics 2013 Aug 30;14:263. Epub 2013 Aug 30.

Department of Neurology, University at Buffalo School of Medicine and Biomedical Sciences, 100 High Street, Buffalo, NY 14203, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-14-263DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3844401PMC
August 2013

Lost and found in behavioral informatics.

Int Rev Neurobiol 2012 ;103:1-18

Oregon Health & Science University, Portland, Oregon, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/B978-0-12-388408-4.00001-0DOI Listing
May 2013

The field of bioinformatics. Preface.

Int Rev Neurobiol 2012 ;103:xi-xii

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/B978-0-12-388408-4.09986-XDOI Listing
May 2013

Dealing with data: a case study on information and data management literacy.

PLoS Biol 2012 29;10(5):e1001339. Epub 2012 May 29.

Library, Oregon Health & Science University, Portland, Oregon, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pbio.1001339DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3362643PMC
August 2012

Uberon, an integrative multi-species anatomy ontology.

Genome Biol 2012 Jan 31;13(1):R5. Epub 2012 Jan 31.

Genomics Division, Lawrence Berkeley National Laboratory, 1 Cycltotron Road MS 64-121, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2012-13-1-r5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334586PMC
January 2012

Integrating phenotype ontologies across multiple species.

Genome Biol 2010 Jan 8;11(1):R2. Epub 2010 Jan 8.

Genome Dynamics Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2010-11-1-r2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2847714PMC
January 2010

Linking human diseases to animal models using ontology-based phenotype annotation.

PLoS Biol 2009 Nov 24;7(11):e1000247. Epub 2009 Nov 24.

Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pbio.1000247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774506PMC
November 2009

Leukaemia inhibitory factor (LIF) is functionally linked to axotrophin and both LIF and axotrophin are linked to regulatory immune tolerance.

FEBS Lett 2005 Jan;579(3):609-14

Department of Surgery, University of Cambridge, Box 202, Level E9, Addenbrooke's Hospital, Hills Road, Cambridge CB2 2QQ, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.febslet.2004.12.027DOI Listing
January 2005

Developmental toxicity of the dithiocarbamate pesticide sodium metam in zebrafish.

Toxicol Sci 2004 Oct 16;81(2):390-400. Epub 2004 Jun 16.

Linus Pauling Institute, Marine/Freshwater Biomedical Sciences Center, 571 Weniger Hall, Oregon State University, Corvallis, Oregon 97331, USA.

View Article

Download full-text PDF

Source
https://academic.oup.com/toxsci/article-lookup/doi/10.1093/t
Publisher Site
http://dx.doi.org/10.1093/toxsci/kfh202DOI Listing
October 2004