Melanie Schirmer

Melanie Schirmer

UNVERIFIED PROFILE

Are you Melanie Schirmer?   Register this Author

Register author
Melanie Schirmer

Melanie Schirmer

Publications by authors named "Melanie Schirmer"

Are you Melanie Schirmer?   Register this Author

26Publications

936Reads

25Profile Views

Microbial genes and pathways in inflammatory bowel disease.

Nat Rev Microbiol 2019 Aug;17(8):497-511

Broad Institute of MIT and Harvard, Cambridge, MA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/s41579-019-0213-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6759048PMC
August 2019

Spatial and Temporal Mapping of Human Innate Lymphoid Cells Reveals Elements of Tissue Specificity.

Immunity 2019 02 12;50(2):505-519.e4. Epub 2019 Feb 12.

Jill Roberts Institute for Research in Inflammatory Bowel Disease, Joan and Stanford I. Weill Department of Medicine, Weill Cornell Medicine, New York, NY, 10021, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.immuni.2019.01.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6594374PMC
February 2019

The causes and consequences of variation in human cytokine production in health.

Curr Opin Immunol 2018 10 15;54:50-58. Epub 2018 Jun 15.

The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital, Boston, MA 02114, USA; Center for Computational and Integrative Biology, Massachusetts General Hospital, Boston, MA 02114, USA; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.coi.2018.05.012DOI Listing
October 2018

Compositional and Temporal Changes in the Gut Microbiome of Pediatric Ulcerative Colitis Patients Are Linked to Disease Course.

Cell Host Microbe 2018 10;24(4):600-610.e4

The Broad Institute of MIT and Harvard, Infectious Disease and Microbiome, Cambridge, MA 02142, USA; Center for Computational and Integrative Biology, Massachusetts General Hospital, Boston, MA 02114, USA; Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital, Boston, MA 02114, USA; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Molecular Biology, Massachusetts General Hospital, Boston, MA 02114, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.chom.2018.09.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6277984PMC
October 2018

Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.

Cell 2016 11;167(4):1125-1136.e8

The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; Center for Computational and Integrative Biology, Massachusetts General Hospital, Boston, MA 02114, USA; Gastrointestinal Unit and Center for the Study of Inflammatory Bowel Disease, Massachusetts General Hospital, Boston, MA 02114, USA; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cell.2016.10.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5131922PMC
November 2016

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data.

BMC Bioinformatics 2016 Mar 11;17:125. Epub 2016 Mar 11.

University of Warwick, Warwick Medical School, Coventry, CV4 7AL, UK.

View Article

Download full-text PDF

Source
http://www.biomedcentral.com/1471-2105/17/125
Publisher Site
http://dx.doi.org/10.1186/s12859-016-0976-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4787001PMC
March 2016

PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes.

PeerJ 2016 8;4:e1603. Epub 2016 Feb 8.

Max-Planck Research Group for Computational Genomics and Epidemiology, Max-Planck Institute for Informatics, Saarbrücken, Germany; Department of Algorithmic Bioinformatics, Heinrich-Heine-University Düsseldorf, Düsseldorf, Germany; Computational Biology of Infection Research, Helmholtz Center for Infection Research, Braunschweig, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.7717/peerj.1603DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4748697PMC
February 2016

Metagenomic Sequencing Unravels Gene Fragments with Phylogenetic Signatures of O2-Tolerant NiFe Membrane-Bound Hydrogenases in Lacustrine Sediment.

Curr Microbiol 2015 Aug 5;71(2):296-302. Epub 2015 Jun 5.

Division of Infrastructure and Environment, School of Engineering, University of Glasgow, Rankine Building, Level 5, Glasgow, G12 8LT, Scotland, UK,

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00284-015-0846-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4486115PMC
August 2015

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform.

Nucleic Acids Res 2015 Mar 13;43(6):e37. Epub 2015 Jan 13.

School of Engineering, University of Glasgow, Glasgow, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gku1341DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4381044PMC
March 2015

Binning metagenomic contigs by coverage and composition.

Nat Methods 2014 Nov 14;11(11):1144-6. Epub 2014 Sep 14.

1] School of Engineering, University of Glasgow, Glasgow, UK. [2].

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nmeth.3103DOI Listing
November 2014

Benchmarking of viral haplotype reconstruction programmes: an overview of the capacities and limitations of currently available programmes.

Brief Bioinform 2014 May 19;15(3):431-42. Epub 2012 Dec 19.

University of Glasgow, Rankine Building, Oakfield Avenue, Glasgow G12 8LT, UK. Tel.: +44-141-330-6311.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bib/bbs081DOI Listing
May 2014