Publications by authors named "Mehmet Sarikaya"

64Publications

Emotional State Estimation using Sensor Fusion of EEG and EDA.

Annu Int Conf IEEE Eng Med Biol Soc 2019 Jul;2019:5609-5612

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http://dx.doi.org/10.1109/EMBC.2019.8856895DOI Listing
July 2019

Thermal Selection of Aqueous Molecular Conformations for Tailored Energetics of Peptide Assemblies at Solid Interfaces.

Langmuir 2020 01 23;36(1):318-327. Epub 2019 Dec 23.

Molecular Engineering and Sciences Institute , University of Washington , Box 351653, Seattle , Washington 98195-1653 , United States.

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http://dx.doi.org/10.1021/acs.langmuir.9b02425DOI Listing
January 2020

Long-term durability of a physician-modified endovascular graft.

J Vasc Surg 2020 02 7;71(2):628-634. Epub 2019 Aug 7.

Division of Vascular Surgery, University of Washington, Seattle, Wash. Electronic address:

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http://dx.doi.org/10.1016/j.jvs.2019.04.471DOI Listing
February 2020

Conformationally directed assembly of peptides on 2D surfaces mediated by thermal stimuli.

Soft Matter 2019 Sep;15(37):7360-7368

Molecular Engineering and Sciences Institute, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1039/c9sm00426bDOI Listing
September 2019

Hermite-Hadamard type inequalities for -convex function involving fractional integrals.

J Inequal Appl 2018 29;2018(1):359. Epub 2018 Dec 29.

2Department of Mathematics, Faculty of Science and Arts, Düzce University, Düzce, Turkey.

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https://journalofinequalitiesandapplications.springeropen.co
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http://dx.doi.org/10.1186/s13660-018-1950-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6311190PMC
December 2018

Electrochemical Control of Peptide Self-Organization on Atomically Flat Solid Surfaces: A Case Study with Graphite.

Langmuir 2018 02 9;34(5):1819-1826. Epub 2017 Nov 9.

Genetically Engineered Materials Science and Engineering Center, Departments of Materials Science and Engineering and Chemical Engineering, University of Washington , Seattle, Washington 98195, United States.

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http://dx.doi.org/10.1021/acs.langmuir.7b02231DOI Listing
February 2018

Bioelectronic interfaces by spontaneously organized peptides on 2D atomic single layer materials.

Sci Rep 2016 Sep 22;6:33778. Epub 2016 Sep 22.

GEMSEC, Genetically Engineered Materials Science and Engineering Center, Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1038/srep33778DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5031961PMC
September 2016

Predicting improvement of postorthodontic white spot lesions.

Am J Orthod Dentofacial Orthop 2016 May;149(5):625-33

Professor and chair, Department of Orthodontics, University of Washington, Seattle, Wash. Electronic address:

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http://dx.doi.org/10.1016/j.ajodo.2015.10.025DOI Listing
May 2016

Engineered Chimeric Peptides as Antimicrobial Surface Coating Agents toward Infection-Free Implants.

ACS Appl Mater Interfaces 2016 Mar 22;8(8):5070-81. Epub 2016 Feb 22.

Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, University of Washington , Seattle, Washington 98195, United States.

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http://dx.doi.org/10.1021/acsami.5b03697DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5310947PMC
March 2016

Thermodynamics of engineered gold binding peptides: establishing the structure-activity relationships.

Biomacromolecules 2014 Jul 13;15(7):2369-77. Epub 2014 Jun 13.

GEMSEC, Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, Roberts Hall, Box: 352120, Seattle, Washington 98195, United States.

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http://dx.doi.org/10.1021/bm4019006DOI Listing
July 2014

Selective detection of target proteins by peptide-enabled graphene biosensor.

Small 2014 Apr 26;10(8):1505-13, 1504. Epub 2014 Mar 26.

GEMSEC, Genetically Engineered Materials Science and Engineering Center, Materials Science and Engineering, University of Washington, 302 Roberts Hall, Seattle, WA, 98195, USA.

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http://dx.doi.org/10.1002/smll.201302188DOI Listing
April 2014

Effect of solid surface charge on the binding behaviour of a metal-binding peptide.

J R Soc Interface 2012 Oct 4;9(75):2688-95. Epub 2012 Apr 4.

Department of Materials Science and Engineering, Istanbul Technical University, Istanbul, Maslak 34469, Turkey.

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http://dx.doi.org/10.1098/rsif.2012.0060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3427497PMC
October 2012

Controlling the surface chemistry of graphite by engineered self-assembled peptides.

Langmuir 2012 Jun 18;28(23):8589-93. Epub 2012 Apr 18.

Materials Science and Engineering, Genetically Engineered Materials Science and Engineering Center, University of Washington, 302 Roberts Hall, Seattle, Washington 98195, USA.

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http://pubs.acs.org/doi/10.1021/la300268d
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http://dx.doi.org/10.1021/la300268dDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3374047PMC
June 2012

Electrical detection of biomolecular adsorption on sprayed graphene sheets.

Biosens Bioelectron 2012 Mar 24;33(1):304-8. Epub 2012 Jan 24.

Genetically Engineered Materials Science and Engineering Center, MSE, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1016/j.bios.2012.01.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4080793PMC
March 2012

Influence of the shape of nanostructured metal surfaces on adsorption of single peptide molecules in aqueous solution.

Small 2012 Apr 10;8(7):1049-59. Epub 2012 Feb 10.

Department of Polymer Engineering, University of Akron, Akron, OH 44325-0301, USA.

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http://dx.doi.org/10.1002/smll.201102066DOI Listing
April 2012

Engineered Escherichia coli silver-binding periplasmic protein that promotes silver tolerance.

Appl Environ Microbiol 2012 Apr 27;78(7):2289-96. Epub 2012 Jan 27.

Department of Microbiology, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1128/AEM.06823-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3302632PMC
April 2012

Direct interaction of ligand-receptor pairs specifying stomatal patterning.

Genes Dev 2012 Jan 12;26(2):126-36. Epub 2012 Jan 12.

Department of Biology, Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1101/gad.179895.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3273837PMC
January 2012

Controlling self-assembly of engineered peptides on graphite by rational mutation.

ACS Nano 2012 Feb 18;6(2):1648-56. Epub 2012 Jan 18.

Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, University of Washington, Seattle, Washington 98195, United States.

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http://dx.doi.org/10.1021/nn204631xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3304023PMC
February 2012

Fabrication of hierarchical hybrid structures using bio-enabled layer-by-layer self-assembly.

Biotechnol Bioeng 2012 May 26;109(5):1120-30. Epub 2011 Dec 26.

Department of Material Science and Engineering, Genetically Engineered Materials Science and Engineering Center (GEMSEC), University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1002/bit.24405DOI Listing
May 2012

Single-step fabrication of patterned gold film array by an engineered multi-functional peptide.

J Colloid Interface Sci 2012 Jan 10;365(1):97-102. Epub 2011 Sep 10.

GEMSEC - Genetically Engineered Materials Science and Engineering Center, Materials Science and Engineering Department, University of Washington, Seattle, WA 98195-2120, USA.

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http://dx.doi.org/10.1016/j.jcis.2011.09.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3711865PMC
January 2012

Assembly kinetics of nanocrystals via peptide hybridization.

Langmuir 2011 Apr 16;27(8):4867-72. Epub 2011 Mar 16.

Department of Electrical and Electronics Engineering, Department of Physics and UNAM-Institute of Materials Science and Nanotechnology, Bilkent University, 06800 Ankara, Turkey.

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http://dx.doi.org/10.1021/la104942tDOI Listing
April 2011

Spatially selective assembly of quantum dot light emitters in an LED using engineered peptides.

ACS Nano 2011 Apr 4;5(4):2735-41. Epub 2011 Mar 4.

Department of Electrical and Electronics Engineering, Bilkent University, 06800 Ankara, Turkey.

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http://dx.doi.org/10.1021/nn103127vDOI Listing
April 2011

In vitro labeling of hydroxyapatite minerals by an engineered protein.

Biotechnol Bioeng 2011 May 28;108(5):1021-30. Epub 2011 Jan 28.

Department of Molecular Biology, Genetics and Biotechnology, Istanbul Technical University, Istanbul, Turkey.

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http://dx.doi.org/10.1002/bit.23041DOI Listing
May 2011

Chemically self-assembled antibody nanorings (CSANs): design and characterization of an anti-CD3 IgM biomimetic.

J Am Chem Soc 2010 Dec 15;132(48):17247-57. Epub 2010 Nov 15.

Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1021/ja107153aDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342400PMC
December 2010

Surface plasmon enhanced fluorescence of cationic conjugated polymer on periodic nanoarrays.

ACS Appl Mater Interfaces 2010 Nov 9;2(11):3153-9. Epub 2010 Nov 9.

Departments of Chemistry and Materials Science and Engineering, University of Washington, Seattle, Washington 98195-2120, USA.

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http://dx.doi.org/10.1021/am100635vDOI Listing
November 2010

Solution study of engineered quartz binding peptides using replica exchange molecular dynamics.

Biomacromolecules 2010 Dec 22;11(12):3266-74. Epub 2010 Oct 22.

Department of Chemistry, University of Warwick, Coventry, CV4 7AL, United Kingdom.

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http://dx.doi.org/10.1021/bm100646zDOI Listing
December 2010

An engineered DNA-binding protein self-assembles metallic nanostructures.

Chembiochem 2010 Oct;11(15):2108-12

Department of Microbiology, University of Washington, Seattle, WA 98195, USA.

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http://doi.wiley.com/10.1002/cbic.201000407
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http://dx.doi.org/10.1002/cbic.201000407DOI Listing
October 2010

Biofunctionalization of materials for implants using engineered peptides.

Acta Biomater 2010 Dec 3;6(12):4634-41. Epub 2010 Jul 3.

GEMSEC, Genetically Engineered Materials Science and Engineering Center, Department of Materials Science & Engineering, University of Washington, Seattle, 98195 WA, USA.

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http://dx.doi.org/10.1016/j.actbio.2010.06.004DOI Listing
December 2010

Self assembled bi-functional peptide hydrogels with biomineralization-directing peptides.

Biomaterials 2010 Oct 29;31(28):7266-74. Epub 2010 Jun 29.

Materials Science and Engineering, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1016/j.biomaterials.2010.06.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4120958PMC
October 2010

Probing the molecular mechanisms of quartz-binding peptides.

Langmuir 2010 Jul;26(13):11003-9

Department of Materials Science and Engineering, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1021/la100049sDOI Listing
July 2010

Molecular biomimetics: GEPI-based biological routes to technology.

Biopolymers 2010 ;94(1):78-94

Genetically Engineered Materials Science and Engineering Center, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1002/bip.21368DOI Listing
March 2010

Genetically designed Peptide-based molecular materials.

ACS Nano 2009 Jul;3(7):1606-15

Genetically Engineered Materials Science and Engineering, Department of Materials Science and Engineering, University of Washington, Seattle, Washington 98195.

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http://dx.doi.org/10.1021/nn900720gDOI Listing
July 2009

Isolation of cobalt hyper-resistant mutants of Saccharomyces cerevisiae by in vivo evolutionary engineering approach.

J Biotechnol 2009 Aug 3;143(2):130-8. Epub 2009 Jul 3.

Department of Molecular Biology and Genetics, Faculty of Science & Letters, Istanbul Technical University, 34469 Maslak, Istanbul, Turkey.

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http://dx.doi.org/10.1016/j.jbiotec.2009.06.024DOI Listing
August 2009

Molecular recognition and supramolecular self-assembly of a genetically engineered gold binding peptide on Au{111}.

ACS Nano 2009 Jun;3(6):1525-31

Genetically Engineered Materials Science and Engineering Center, Department of Materials Science and Engineering, University of Washington, Seattle, WA 98105, USA.

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http://dx.doi.org/10.1021/nn900171sDOI Listing
June 2009

Surface-plasmon-enhanced fluorescence from periodic quantum dot arrays through distance control using biomolecular linkers.

Nanotechnology 2009 Jan 5;20(1):015305. Epub 2008 Dec 5.

Department of Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA.

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http://stacks.iop.org/0957-4484/20/i=1/a=015305?key=crossref
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http://dx.doi.org/10.1088/0957-4484/20/1/015305DOI Listing
January 2009

Molecular biomimetics: nanotechnology and bionanotechnology using genetically engineered peptides.

Philos Trans A Math Phys Eng Sci 2009 May;367(1894):1705-26

Genetically Engineered Materials Science and Engineering Center, University of WashingtonSeattle, WA 98195, USA.

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http://dx.doi.org/10.1098/rsta.2009.0018DOI Listing
May 2009

Adsorption, diffusion, and self-assembly of an engineered gold-binding peptide on Au(111) investigated by atomic force microscopy.

Angew Chem Int Ed Engl 2009 ;48(28):5174-7

Genetically Engineered Materials Science and Engineering Center, University of Washington, 302 Roberts Hall, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1002/anie.200805259DOI Listing
September 2009

Nanopatterning peptides as bifunctional inks for templated assembly.

Small 2009 Mar;5(6):689-93

Department of Chemistry University of Washington Box 351700, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1002/smll.200801911DOI Listing
March 2009

Enzyme nanorings.

ACS Nano 2008 Dec;2(12):2519-25

Department of Medicinal Chemistry, University of Minnesota, Minneapolis, MN 55455, USA.

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http://dx.doi.org/10.1021/nn800577hDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2682639PMC
December 2008

Tooth-forming potential in embryonic and postnatal tooth bud cells.

Med Mol Morphol 2008 Dec 24;41(4):183-92. Epub 2008 Dec 24.

Department of Anatomy, Nihon University School of Dentistry, 1-8-13 Kanda-Surugadai, Chiyoda-ku, Tokyo, 101-8310, Japan.

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http://link.springer.com/10.1007/s00795-008-0416-9
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http://dx.doi.org/10.1007/s00795-008-0416-9DOI Listing
December 2008

Quantitative affinity of genetically engineered repeating polypeptides to inorganic surfaces.

Biomacromolecules 2009 Feb;10(2):250-7

Materials Science and Engineering, University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1021/bm8009895DOI Listing
February 2009

Effect of molecular conformations on the adsorption behavior of gold-binding peptides.

Langmuir 2008 Nov 8;24(21):12440-5. Epub 2008 Oct 8.

Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1021/la801468cDOI Listing
November 2008

Three-dimensional architecture of inorganic nanoarrays electrodeposited through a surface-layer protein mask.

Nano Lett 2008 May 1;8(5):1434-8. Epub 2008 Apr 1.

Department of Chemical Engineering, University of Washington, Seattle, Washington 98195, USA.

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http://pubs.acs.org/doi/abs/10.1021/nl0803444
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http://dx.doi.org/10.1021/nl0803444DOI Listing
May 2008

Regulation of in vitro calcium phosphate mineralization by combinatorially selected hydroxyapatite-binding peptides.

Biomacromolecules 2008 Mar 14;9(3):966-73. Epub 2008 Feb 14.

University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1021/bm701037xDOI Listing
March 2008

A novel knowledge-based approach to design inorganic-binding peptides.

Bioinformatics 2007 Nov 17;23(21):2816-22. Epub 2007 Sep 17.

Materials Science and Engineering Department, University of Washington, Seattle, USA.

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http://dx.doi.org/10.1093/bioinformatics/btm436DOI Listing
November 2007

Assembly of nanomaterials through highly ordered self-assembled monolayers and peptide-organic hybrid conjugates as templates.

J Nanosci Nanotechnol 2007 Aug;7(8):2549-66

Department of Materials Science and Engineering, University of Washington, Box 352120, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1166/jnn.2007.615DOI Listing
August 2007

Adsorption behavior of linear and cyclic genetically engineered platinum binding peptides.

Langmuir 2007 Jul 19;23(15):7895-900. Epub 2007 Jun 19.

Genetically Engineered Materials Science and Engineering Center, Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1021/la700446gDOI Listing
July 2007

Stability of S-layer proteins for electrochemical nanofabrication.

Colloids Surf B Biointerfaces 2007 Jun 16;57(2):256-61. Epub 2007 Feb 16.

Department of Chemical Engineering, University of Washington, Seattle, WA, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S092777650700075
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http://dx.doi.org/10.1016/j.colsurfb.2007.02.011DOI Listing
June 2007

Molecular biomimetics: utilizing nature's molecular ways in practical engineering.

Acta Biomater 2007 May 25;3(3):289-99. Epub 2007 Jan 25.

Materials Science and Engineering, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1016/j.actbio.2006.10.009DOI Listing
May 2007

Assembly of gold nanoparticles using genetically engineered polypeptides.

Small 2005 Jul;1(7):698-702

Department of Materials Science and Engineering, University of Washington, Seattle, WA 98195-2120, USA.

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http://doi.wiley.com/10.1002/smll.200400164
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http://dx.doi.org/10.1002/smll.200400164DOI Listing
July 2005

Materials specificity and directed assembly of a gold-binding peptide.

Small 2006 Nov;2(11):1372-8

Materials Science & Engineering Department, Roberts Hall, Box: 352120, University of Washington, Seattle, WA 98195, USA.

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http://dx.doi.org/10.1002/smll.200600070DOI Listing
November 2006

Adsorption kinetics of an engineered gold binding Peptide by surface plasmon resonance spectroscopy and a quartz crystal microbalance.

Langmuir 2006 Aug;22(18):7712-8

Material Science and Engineering, University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1021/la0606897DOI Listing
August 2006

Nonequilibrium synthesis and assembly of hybrid inorganic-protein nanostructures using an engineered DNA binding protein.

J Am Chem Soc 2005 Nov;127(44):15637-43

Departments of Chemical Engineering, Materials Science and Engineering, and Microbiology, University of Washington, Seattle, WA 98195-1750, USA.

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http://dx.doi.org/10.1021/ja055499hDOI Listing
November 2005

Through-mask anodic patterning of copper surfaces and film stability in biological media.

Langmuir 2004 Apr;20(8):3483-6

Department of Chemical Engineering, University of Washington, Seattle, Washington 98195-1750, USA.

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http://dx.doi.org/10.1021/la0350711DOI Listing
April 2004

Electrochemical nanofabrication using crystalline protein masks.

Nano Lett 2005 Apr;5(4):609-13

Chemical Engineering Department, University of Washington, Seattle, Washington 98195-1750, USA.

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http://dx.doi.org/10.1021/nl047967bDOI Listing
April 2005

Metal recognition of septapeptides via polypod molecular architecture.

Nano Lett 2005 Mar;5(3):415-9

Materials Science & Engineering and Chemical Engineering, University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1021/nl048425xDOI Listing
March 2005

Hsp70 and Hsp40 attenuate formation of spherical and annular polyglutamine oligomers by partitioning monomer.

Nat Struct Mol Biol 2004 Dec 14;11(12):1215-22. Epub 2004 Nov 14.

Department of Pharmacology, University of Washington, Seattle, Washington, 98195-2120, USA.

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http://www.nature.com/articles/nsmb860
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http://dx.doi.org/10.1038/nsmb860DOI Listing
December 2004

Ordered self-assembly and electronic behavior of C60-anthrylphenylacetylene hybrid.

Angew Chem Int Ed Engl 2004 Mar;43(12):1512-6

Department of Materials Science and Engineering, University of Washington, Seattle, WA 98195-2120, USA.

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http://doi.wiley.com/10.1002/anie.200353001
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http://dx.doi.org/10.1002/anie.200353001DOI Listing
March 2004

Enamel structure properties controlled by engineered proteins in transgenic mice.

J Bone Miner Res 2003 Nov;18(11):2052-9

Department of Materials Science and Engineering, University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1359/jbmr.2003.18.11.2052DOI Listing
November 2003

Molecular biomimetics: nanotechnology through biology.

Nat Mater 2003 Sep;2(9):577-85

Materials Science & Engineering, University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1038/nmat964DOI Listing
September 2003

Genetically engineered gold-binding polypeptides: structure prediction and molecular dynamics.

J Biomater Sci Polym Ed 2002 ;13(7):747-57

Beckman Institute and Department of Physics, University of Illinois, Urbana 61801, USA.

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http://dx.doi.org/10.1163/156856202760197384DOI Listing
April 2003