Publications by authors named "Mehdi Sadeghi"

110Publications

Inter-protein residue covariation information unravels physically interacting protein dimers.

Authors:
Sara Salmanian Hamid Pezeshk Mehdi Sadeghi

BMC Bioinformatics 2020 Dec 17;21(1):584. Epub 2020 Dec 17.

National Institute of Genetic Engineering and Biotechnology, Tehran, Iran.

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December 2020

A computational model of stem cell molecular mechanism to maintain tissue homeostasis.

Authors:
Najme Khorasani Mehdi Sadeghi Abbas Nowzari-Dalini

PLoS One 2020 30;15(7):e0236519. Epub 2020 Jul 30.

School of Mathematics, Statistics and Computer Science, College of Science, University of Tehran, Tehran, Iran.

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September 2020

LogicNet: probabilistic continuous logics in reconstructing gene regulatory networks.

Authors:
Seyed Amir Malekpour Amir Reza Alizad-Rahvar Mehdi Sadeghi

BMC Bioinformatics 2020 Jul 20;21(1):318. Epub 2020 Jul 20.

National Institute of Genetic Engineering and Biotechnology, Tehran, Iran.

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July 2020

Phylogenetic and phylodynamic study of Human T-cell lymphotropic virus Type 1 (HTLV-1) in Iran.

Authors:
Cobra Razavi Pashabayg Navid Momenifar Seyed Amir Malekpour Mehdi Sadeghi Abbas Rahimi Foroushani Houshang Rafatpanah Narges Valizadeh Faezeh Sabet Seyed Mohammad Jazayeri Hossein Keyvani Seyed Abdolrahim Rezaee Mehdi Norouzi

Infect Genet Evol 2020 Nov 16;85:104426. Epub 2020 Jun 16.

Department of Virology, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran; Research Center for Clinical Virology, Tehran University of Medical Sciences, Tehran, Iran. Electronic address:

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November 2020

Noise-driven cell differentiation and the emergence of spatiotemporal patterns.

Authors:
Hadiseh Safdari Ata Kalirad Cristian Picioreanu Rouzbeh Tusserkani Bahram Goliaei Mehdi Sadeghi

PLoS One 2020 24;15(4):e0232060. Epub 2020 Apr 24.

National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, Iran.

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July 2020

Mid-infrared hybrid Si/VO modulator electrically driven by graphene electrodes.

Authors:
Mehdi Sadeghi Babak Janjan Mohsen Heidari Derek Abbott

Opt Express 2020 Mar;28(7):9198-9207

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March 2020

Enhanced quasi-phase-matched second-harmonic generation in a silicon-organic hybrid microring resonator.

Authors:
Mehdi Sadeghi Babak Janjan

Appl Opt 2020 Feb;59(4):1117-1122

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February 2020

Integrative Analysis of Breast Cancer Cells Reveals an Epithelial-Mesenchymal Transition Role in Adaptation to Acidic Microenvironment.

Authors:
Mehdi Sadeghi Bryce Ordway Ilyia Rafiei Punit Borad Bin Fang John L Koomen Chaomei Zhang Sean Yoder Joseph Johnson Mehdi Damaghi

Front Oncol 2020 10;10:304. Epub 2020 Mar 10.

Department of Cancer Physiology, Moffitt Cancer Center and Research Institute, Tampa, FL, United States.

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March 2020

From indication to decision: A hierarchical approach to model the chemotactic behavior of Escherichia coli.

Authors:
Safar Vafadar Kaveh Kavousi Hadiseh Safdari Ata Kalirad Mehdi Sadeghi

J Theor Biol 2020 06 20;495:110253. Epub 2020 Mar 20.

School of Biological Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran; National Institute of Genetic Engineering and Biotechnology (NIGEB), Tehran, Iran. Electronic address:

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June 2020

A comparative study on the equine and camelid antivenoms upon cardiovascular changes induced with venom in rats.

Authors:
Hossein Fatemikia Mostafa Kamyab Ali Movahed Mehdi Sadeghi Euikyung Kim Mahdi Behdani Naser Mohammadpour Dounighi Mehrnaz Shahrivar Ramin Seyedian

Iran J Basic Med Sci 2019 Dec;22(12):1440-1444

Department of Pharmacology, Bushehr University of Medical Sciences, Bushehr, Iran.

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December 2019

A Stochastic Model of DNA Double-Strand Breaks Repair Throughout the Cell Cycle.

Authors:
Fazeleh S Mohseni-Salehi Fatemeh Zare-Mirakabad Mehdi Sadeghi Soudeh Ghafouri-Fard

Bull Math Biol 2020 01 14;82(1):11. Epub 2020 Jan 14.

Department of Medical Genetics, Shahid Beheshti University of Medical Sciences, Tehran, Iran.

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January 2020

Molecular Basis of Bicalutamide Response Alteration of Androgen Receptor Caused by Single Nucleotide Polymorphisms: An In Silico Investigation.

Authors:
Noushin Hadian Farzaneh Mohamadi Farsani Mohamad Reza Ganjalikhany Hossein Sazegar Mehdi Sadeghi

Crit Rev Eukaryot Gene Expr 2019 ;29(2):177-187

Department of Cell and Molecular Biology, Faculty of Science, Semnan University, Semnan, Iran.

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February 2020

Identification of a missense variant in CLDN2 in obstructive azoospermia.

Authors:
Masomeh Askari Razieh Karamzadeh Naser Ansari-Pour Mohammad Hossein Karimi-Jafari Navid Almadani Mohammad Ali Sadighi Gilani Hamid Gourabi Ahmad Vosough Taghi Dizaj Anahita Mohseni Meybodi Mehdi Sadeghi Anu Bashamboo Ken McElreavey Mehdi Totonchi

J Hum Genet 2019 Oct 18;64(10):1023-1032. Epub 2019 Jul 18.

Department of Genetics at Reproductive Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACECR, Tehran, Iran.

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October 2019

New insights into resistance of Helicobacter pylori against third- and fourth-generation fluoroquinolones: A molecular docking study of prevalent GyrA mutations.

Authors:
Najmeh Salehi Bahareh Attaran Negin Eskini Maryam Esmaeili Atefeh Sharifirad Mehdi Sadeghi Marjan Mohammadi

Helicobacter 2019 Oct 7;24(5):e12628. Epub 2019 Jul 7.

HPGC Research Group, Department of Medical Biotechnology, Pasteur Institute of Iran, Tehran, Iran.

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October 2019

A Network-Based Comparison Between Molecular Apocrine Breast Cancer Tumor and Basal and Luminal Tumors by Joint Graphical Lasso.

Authors:
Maryam Shahdoust Hossein Mahjub Hamid Pezeshk Mehdi Sadeghi

IEEE/ACM Trans Comput Biol Bioinform 2020 Sep-Oct;17(5):1555-1562. Epub 2019 Apr 15.

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April 2019

The effects of branch-chain amino acids on fatigue in the athletes.

Authors:
Imanipour Vahid Banaiifar Abdolali Mahdi Fatemeh Naderi Alireza Sadeghi Mehdi

Interv Med Appl Sci 2018 Dec;10(4):233-235

Shiraz Branch, Islamic Azad University, Shiraz, Iran.

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December 2018

Ambiguity in logic-based models of gene regulatory networks: An integrative multi-perturbation analysis.

Authors:
Amir Reza Alizad-Rahvar Mehdi Sadeghi

PLoS One 2018 20;13(11):e0206976. Epub 2018 Nov 20.

National Institute for Genetic Engineering and Biotechnology, Tehran, Iran.

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April 2019

Assessing the impact of exact reads on reducing the error rate of read mapping.

Authors:
Farzaneh Salari Fatemeh Zare-Mirakabad Mehdi Sadeghi Hassan Rokni-Zadeh

BMC Bioinformatics 2018 Nov 6;19(1):406. Epub 2018 Nov 6.

Department of Biotechnology and Molecular Medicine, Zanjan University of Medical Sciences, Zanjan, Iran.

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November 2018

Modeling the probability distribution of the bacterial burst size via a game-theoretic approach.

Authors:
Seyed Amir Malekpour Parsa Pakzad Mohammad-Hadi Foroughmand-Araabi Sama Goliaei Ruzbeh Tusserkani Bahram Goliaei Mehdi Sadeghi

J Bioinform Comput Biol 2018 08 3;16(4):1850012. Epub 2018 May 3.

∥ Department of Medical Biochemistry, National Institute of Genetic Engineering and Biotechnology, Tehran, Iran.

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August 2018

MSeq-CNV: accurate detection of Copy Number Variation from Sequencing of Multiple samples.

Authors:
Seyed Amir Malekpour Hamid Pezeshk Mehdi Sadeghi

Sci Rep 2018 03 5;8(1):4009. Epub 2018 Mar 5.

National Institute of Genetic Engineering and Biotechnology, Tehran, Iran.

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March 2018