Mehdi Pirooznia

Mehdi Pirooznia

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Mehdi Pirooznia

Mehdi Pirooznia

Publications by authors named "Mehdi Pirooznia"

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56Publications

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De novo variation in bipolar disorder.

Mol Psychiatry 2019 Nov 27. Epub 2019 Nov 27.

Department of Psychiatry and Behavioral Sciences, Johns Hopkins University School of Medicine, 550 N. Broadway, Suite 202, Baltimore, MD, 21287, USA.

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http://dx.doi.org/10.1038/s41380-019-0611-1DOI Listing
November 2019

IKAP-Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis.

Gigascience 2019 10;8(10)

Bioinformatics and Computational Biology Laboratory, National Heart, Lung, and Blood Institute, National Institutes of Health, 12 South Drive, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/gigascience/giz121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6771546PMC
October 2019

Electron transport chain biogenesis activated by a JNK-insulin-Myc relay primes mitochondrial inheritance in .

Elife 2019 10 15;8. Epub 2019 Oct 15.

National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, United States.

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http://dx.doi.org/10.7554/eLife.49309DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6809605PMC
October 2019

Targeted RNA-sequencing for the quantification of measurable residual disease in acute myeloid leukemia.

Haematologica 2019 Feb 31;104(2):297-304. Epub 2018 Aug 31.

Laboratory of Myeloid Malignancies, Hematology Branch, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD

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http://dx.doi.org/10.3324/haematol.2018.203133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355494PMC
February 2019

The transcription factors TFE3 and TFEB amplify p53 dependent transcriptional programs in response to DNA damage.

Elife 2018 12 6;7. Epub 2018 Dec 6.

Cell and Developmental Biology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Maryland, United States.

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http://dx.doi.org/10.7554/eLife.40856DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6292694PMC
December 2018

Ancient Ancestry Informative Markers for Identifying Fine-Scale Ancient Population Structure in Eurasians.

Genes (Basel) 2018 Dec 12;9(12). Epub 2018 Dec 12.

Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK.

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http://dx.doi.org/10.3390/genes9120625DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6316245PMC
December 2018

GCN5L1 interacts with αTAT1 and RanBP2 to regulate hepatic α-tubulin acetylation and lysosome trafficking.

J Cell Sci 2018 11 20;131(22). Epub 2018 Nov 20.

Laboratory of Mitochondrial Biology and Metabolism, NHLBI, National Institutes of Health, Bethesda, MD 20892, USA

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http://dx.doi.org/10.1242/jcs.221036DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6262773PMC
November 2018

Circulating cell-free DNA as a biomarker of tissue injury: Assessment in a cardiac xenotransplantation model.

J Heart Lung Transplant 2018 08 26;37(8):967-975. Epub 2018 Apr 26.

Genomic Research Alliance for Transplantation (GRAfT), Division of Intramural Research, National Institutes of Health, Bethesda, Maryland; Division of Intramural Research, National Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland. Electronic address:

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http://dx.doi.org/10.1016/j.healun.2018.04.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6707066PMC
August 2018

Genome-wide Methyl-Seq analysis of blood-brain targets of glucocorticoid exposure.

Epigenetics 2017 08 30;12(8):637-652. Epub 2017 May 30.

a Mood Disorders Center, Department of Psychiatry and Behavioral Sciences , Johns Hopkins University School of Medicine , Baltimore , MD, USA.

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http://dx.doi.org/10.1080/15592294.2017.1334025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5687336PMC
August 2017

The Origins of Ashkenaz, Ashkenazic Jews, and Yiddish.

Front Genet 2017 21;8:87. Epub 2017 Jun 21.

Department of Animal and Plant Sciences, University of SheffieldSheffield, United Kingdom.

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http://journal.frontiersin.org/article/10.3389/fgene.2017.00
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http://dx.doi.org/10.3389/fgene.2017.00087DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5478715PMC
June 2017

Functional Genomics, Genetics, and Bioinformatics 2016.

Biomed Res Int 2016 22;2016:2625831. Epub 2016 Nov 22.

Department of Biology, Indiana State University, Terre Haute, IN 47809, USA.

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http://dx.doi.org/10.1155/2016/2625831DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5138440PMC
February 2017

Reconstructing Druze population history.

Sci Rep 2016 11 16;6:35837. Epub 2016 Nov 16.

University of Sheffield, Department of Animal and Plant Sciences, Sheffield S10 2TN, UK.

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http://dx.doi.org/10.1038/srep35837DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5111078PMC
November 2016

Polygenic Risk of Schizophrenia and Cognition in a Population-Based Survey of Older Adults.

Schizophr Bull 2016 07 12;42(4):984-91. Epub 2016 Feb 12.

Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, Baltimore, MD;

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http://dx.doi.org/10.1093/schbul/sbw001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4903061PMC
July 2016

Localizing Ashkenazic Jews to Primeval Villages in the Ancient Iranian Lands of Ashkenaz.

Genome Biol Evol 2016 Apr 19;8(4):1132-49. Epub 2016 Apr 19.

Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK

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http://dx.doi.org/10.1093/gbe/evw046DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4860683PMC
April 2016

Evaluation of Plasma miR-21 and miR-152 as Diagnostic Biomarkers for Common Types of Human Cancers.

J Cancer 2016 5;7(5):490-9. Epub 2016 Feb 5.

1. Rush University Cancer Center, Chicago, IL 60612;; 2. Department of Pathology, Rush University Medical Center, Chicago, IL 60612;; 5. Department of Internal Medicine, Rush University Medical Center, Chicago, IL 60612;

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http://dx.doi.org/10.7150/jca.12351DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4780124PMC
March 2016

Genome-wide association study of schizophrenia in Ashkenazi Jews.

Am J Med Genet B Neuropsychiatr Genet 2015 Dec 21;168(8):649-59. Epub 2015 Jul 21.

Department of Psychiatry and Behavioral Sciences, Johns Hopkins University School of Medicine, Baltimore, Maryland.

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http://dx.doi.org/10.1002/ajmg.b.32349DOI Listing
December 2015

Whole-genome CNV analysis: advances in computational approaches.

Front Genet 2015 13;6:138. Epub 2015 Apr 13.

Mood Disorders Center, Department of Psychiatry and Behavioral Sciences, School of Medicine, Johns Hopkins University Baltimore, MD, USA ; Department of Mental Health, Johns Hopkins Bloomberg School of Public Health Baltimore, MD, USA USA.

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http://dx.doi.org/10.3389/fgene.2015.00138DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4394692PMC
April 2015

Validation and assessment of variant calling pipelines for next-generation sequencing.

Hum Genomics 2014 Jul 30;8:14. Epub 2014 Jul 30.

Department of Psychiatry and Behavioral Sciences, Johns Hopkins University, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1186/1479-7364-8-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4129436PMC
July 2014

Systematic review of genome-wide gene expression studies of bipolar disorder.

BMC Psychiatry 2013 Aug 15;13:213. Epub 2013 Aug 15.

Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.1186/1471-244X-13-213DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3765828PMC
August 2013

A hybrid likelihood model for sequence-based disease association studies.

PLoS Genet 2013 24;9(1):e1003224. Epub 2013 Jan 24.

Department of Biomedical Engineering and Institute for Computational Medicine, Johns Hopkins University, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1371/journal.pgen.1003224DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3554549PMC
May 2013

SVAw - a web-based application tool for automated surrogate variable analysis of gene expression studies.

Source Code Biol Med 2013 Mar 11;8(1). Epub 2013 Mar 11.

Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.1186/1751-0473-8-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3614430PMC
March 2013

Meta-analysis of genetic association studies on bipolar disorder.

Am J Med Genet B Neuropsychiatr Genet 2012 Jul 9;159B(5):508-18. Epub 2012 May 9.

Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, Baltimore, Maryland 21287, USA.

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http://dx.doi.org/10.1002/ajmg.b.32057DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3582382PMC
July 2012

Data mining approaches for genome-wide association of mood disorders.

Psychiatr Genet 2012 Apr;22(2):55-61

School of Medicine, Johns Hopkins University, Baltimore, MD 21205, USA.

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http://dx.doi.org/10.1097/YPG.0b013e32834dc40dDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3306768PMC
April 2012

SynaptomeDB: an ontology-based knowledgebase for synaptic genes.

Bioinformatics 2012 Mar 27;28(6):897-9. Epub 2012 Jan 27.

Department of Psychiatry and Behavioral Sciences, Johns Hopkins School of Medicine, MD, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3307115PMC
March 2012

Gene expression analysis of CL-20-induced reversible neurotoxicity reveals GABA(A) receptors as potential targets in the earthworm Eisenia fetida.

Environ Sci Technol 2012 Jan 6;46(2):1223-32. Epub 2012 Jan 6.

Environmental Services, SpecPro Inc., San Antonio, Texas 78216, United States.

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http://dx.doi.org/10.1021/es203642eDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3332050PMC
January 2012

Design, validation and annotation of transcriptome-wide oligonucleotide probes for the oligochaete annelid Eisenia fetida.

PLoS One 2010 Dec 8;5(12):e14266. Epub 2010 Dec 8.

Environmental Services, SpecPro Inc., Vicksburg, Mississippi, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0014266PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2999564PMC
December 2010

GOfetcher: a database with complex searching facility for gene ontology.

Bioinformatics 2008 Nov 26;24(21):2561-3. Epub 2008 Aug 26.

Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btn441DOI Listing
November 2008

Batch Blast Extractor: an automated blastx parser application.

BMC Genomics 2008 Sep 16;9 Suppl 2:S10. Epub 2008 Sep 16.

Department of Biological Sciences, University of Southern MS, Hattiesburg 39406, USA.

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http://dx.doi.org/10.1186/1471-2164-9-S2-S10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2559874PMC
September 2008

ILOOP--a web application for two-channel microarray interwoven loop design.

BMC Genomics 2008 Sep 16;9 Suppl 2:S11. Epub 2008 Sep 16.

Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406, USA.

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http://dx.doi.org/10.1186/1471-2164-9-S2-S11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2559875PMC
September 2008

A comparative study of different machine learning methods on microarray gene expression data.

BMC Genomics 2008 ;9 Suppl 1:S13

Department of Biological Sciences, University of Southern Mississippi, Hattiesburg 39406, USA.

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http://dx.doi.org/10.1186/1471-2164-9-S1-S13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2386055PMC
June 2008

Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida.

BMC Bioinformatics 2007 Nov 1;8 Suppl 7:S7. Epub 2007 Nov 1.

Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-8-S7-S7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2099499PMC
November 2007

GeneVenn - A web application for comparing gene lists using Venn diagrams.

Bioinformation 2007 Apr 10;1(10):420-2. Epub 2007 Apr 10.

Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, Mississippi 39406, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1899164PMC
http://dx.doi.org/10.6026/97320630001420DOI Listing
April 2007

SVM Classifier - a comprehensive java interface for support vector machine classification of microarray data.

BMC Bioinformatics 2006 Dec 12;7 Suppl 4:S25. Epub 2006 Dec 12.

Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, Mississippi 39406, USA.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
Publisher Site
http://dx.doi.org/10.1186/1471-2105-7-S4-S25DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1780131PMC
December 2006

RiboaptDB: a comprehensive database of ribozymes and aptamers.

BMC Bioinformatics 2006 Sep 6;7 Suppl 2:S6. Epub 2006 Sep 6.

Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, Mississippi 39406, USA.

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http://dx.doi.org/10.1186/1471-2105-7-S2-S6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1683567PMC
September 2006