Publications by authors named "Maxwell W Libbrecht"

9Publications

PREDICTD PaRallel Epigenomics Data Imputation with Cloud-based Tensor Decomposition.

Nat Commun 2018 04 11;9(1):1402. Epub 2018 Apr 11.

Department of Genome Sciences, University of Washington, Foege Building S-250, Box 355065, 3720 15th Ave NE, Seattle, WA, 98195, USA.

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http://dx.doi.org/10.1038/s41467-018-03635-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5895786PMC
April 2018

Choosing non-redundant representative subsets of protein sequence data sets using submodular optimization.

Proteins 2018 04 1;86(4):454-466. Epub 2018 Feb 1.

Department of Genome Sciences, University of Washington, Seattle, Washington.

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http://dx.doi.org/10.1002/prot.25461DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5835207PMC
April 2018

Choosing panels of genomics assays using submodular optimization.

Genome Biol 2016 11 15;17(1):229. Epub 2016 Nov 15.

Department of Genome Sciences, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1186/s13059-016-1089-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5111315PMC
November 2016

Distinct epigenetic features of differentiation-regulated replication origins.

Epigenetics Chromatin 2016 10;9:18. Epub 2016 May 10.

DNA Replication Group, Developmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892 USA.

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http://dx.doi.org/10.1186/s13072-016-0067-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4862150PMC
May 2016

Machine learning applications in genetics and genomics.

Nat Rev Genet 2015 Jun 7;16(6):321-32. Epub 2015 May 7.

1] Department of Computer Science and Engineering, University of Washington, 185 Stevens Way, Seattle, Washington 98195-2350, USA. [2] Department of Genome Sciences, University of Washington, 3720 15th Ave NE Seattle, Washington 98195-5065, USA.

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https://data.broadinstitute.org/alkesgroup/HEATHER/Libbrecht
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http://www.nature.com/doifinder/10.1038/nrg3920
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http://dx.doi.org/10.1038/nrg3920DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5204302PMC
June 2015

Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression.

Genome Res 2015 Apr 12;25(4):544-57. Epub 2015 Feb 12.

Department of Computer Science and Engineering, University of Washington, Seattle, Washington 98195, USA Department of Genome Sciences, University of Washington, Seattle, Washington 98195, USA.

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http://dx.doi.org/10.1101/gr.184341.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4381526PMC
April 2015

Comparative analysis of metazoan chromatin organization.

Nature 2014 Aug;512(7515):449-52

1] Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA [3] Informatics Program, Children's Hospital, Boston, Massachusetts 02215, USA.

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http://dx.doi.org/10.1038/nature13415DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4227084PMC
August 2014