Publications by authors named "Maximilian Haeussler"

46Publications

CRISPR off-targets: a question of context.

Cell Biol Toxicol 2020 02 16;36(1):5-9. Epub 2019 Nov 16.

Genomics Institute, University of California at Santa Cruz, 1156 High Street, Santa Cruz, CA, 95064, USA.

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http://dx.doi.org/10.1007/s10565-019-09497-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7056574PMC
February 2020

Single-cell genomics identifies cell type-specific molecular changes in autism.

Science 2019 05;364(6441):685-689

Eli and Edythe Broad Center of Regeneration Medicine and Stem Cell Research, University of California, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1126/science.aav8130DOI Listing
May 2019

CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens.

Nucleic Acids Res 2018 07;46(W1):W242-W245

Genomics Institute, University of California at Santa Cruz, 1156 High Street, MS CBSE, Santa Cruz, CA 95060, USA.

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https://academic.oup.com/nar/article/46/W1/W242/4995687
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http://dx.doi.org/10.1093/nar/gky354DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030908PMC
July 2018

Integrated design, execution, and analysis of arrayed and pooled CRISPR genome-editing experiments.

Nat Protoc 2018 05 12;13(5):946-986. Epub 2018 Apr 12.

Molecular Pathology Unit and Cancer Center, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts, USA.

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http://www.nature.com/doifinder/10.1038/nprot.2018.005
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http://dx.doi.org/10.1038/nprot.2018.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6182299PMC
May 2018

HNRNPA1 promotes recognition of splice site decoys by U2AF2 in vivo.

Genome Res 2018 05 12;28(5):689-698. Epub 2018 Apr 12.

Department of Molecular, Cellular and Developmental Biology, University of California Santa Cruz, Santa Cruz, California 95064, USA.

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http://dx.doi.org/10.1101/gr.229062.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5932609PMC
May 2018

Evaluation and rational design of guide RNAs for efficient CRISPR/Cas9-mediated mutagenesis in Ciona.

Dev Biol 2017 05 22;425(1):8-20. Epub 2017 Mar 22.

Department of Biology, New York University, New York, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2017.03.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5502750PMC
May 2017

Genome Editing with CRISPR-Cas9: Can It Get Any Better?

J Genet Genomics 2016 05 24;43(5):239-50. Epub 2016 Apr 24.

Laboratoire Structure et Instabilité des Génomes, Inserm U1154, CNRS UMR7196, Muséum national d'Histoire naturelle, 43 rue Cuvier, 75005 Paris, France. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S16738527163004
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http://dx.doi.org/10.1016/j.jgg.2016.04.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5708852PMC
May 2016

Navigating protected genomics data with UCSC Genome Browser in a Box.

Bioinformatics 2015 Mar 27;31(5):764-6. Epub 2014 Oct 27.

Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA and Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu712DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4341066PMC
March 2015

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.

Nature 2014 Dec 28;516(7530):242-5. Epub 2014 Sep 28.

1] Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA [2] Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, California 95064, USA.

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http://dx.doi.org/10.1038/nature13760DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4268317PMC
December 2014

The UCSC Genome Browser database: 2014 update.

Nucleic Acids Res 2014 Jan 21;42(Database issue):D764-70. Epub 2013 Nov 21.

Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz (UCSC), 1156 High Street, Santa Cruz, CA 95064, USA, Computational Biology Graduate Group, University of California Berkeley, Berkeley, CA 94720, USA, Department of Genetics, Stanford University School of Medicine, 3165 Porter Drive, Stanford, CA 94305, USA and Howard Hughes Medical Institute, Center for Biomolecular Science and Engineering, UCSC, 1156 High Street, Santa Cruz, CA 95064, USA.

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http://dx.doi.org/10.1093/nar/gkt1168DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964947PMC
January 2014

Initial deployment of the cardiogenic gene regulatory network in the basal chordate, Ciona intestinalis.

Dev Biol 2012 Aug 14;368(1):127-39. Epub 2012 May 14.

Department of Molecular and Cellular Biology, Molecular Cardiovascular Research Program, University of Arizona, Arizona 85724, USA.

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http://dx.doi.org/10.1016/j.ydbio.2012.05.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3383925PMC
August 2012

pubmed2ensembl: a resource for mining the biological literature on genes.

PLoS One 2011 29;6(9):e24716. Epub 2011 Sep 29.

Faculty of Life Sciences, University of Manchester, Manchester, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0024716PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3183000PMC
April 2012

The GNAT library for local and remote gene mention normalization.

Bioinformatics 2011 Oct 3;27(19):2769-71. Epub 2011 Aug 3.

Pharma Research and Early Development, Hoffmann-La Roche Inc., Nutley, NJ 07110, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr455DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3179658PMC
October 2011

Annotating genes and genomes with DNA sequences extracted from biomedical articles.

Bioinformatics 2011 Apr 16;27(7):980-6. Epub 2011 Feb 16.

Faculty of Life Sciences, University of Manchester, Manchester, UK.

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http://dx.doi.org/10.1093/bioinformatics/btr043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065681PMC
April 2011

When needles look like hay: how to find tissue-specific enhancers in model organism genomes.

Dev Biol 2011 Feb 3;350(2):239-54. Epub 2010 Dec 3.

U1126 MSNC INRA Group, UPR3294 NED, Institut Fessard, CNRS, Gif-sur-Yvette, France.

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http://dx.doi.org/10.1016/j.ydbio.2010.11.026DOI Listing
February 2011

A cis-regulatory signature for chordate anterior neuroectodermal genes.

PLoS Genet 2010 Apr 15;6(4):e1000912. Epub 2010 Apr 15.

INRA group, UPR3294, Institute of Neurosciences Alfred Fessard, CNRS, Gif-sur-Yvette, France.

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http://dx.doi.org/10.1371/journal.pgen.1000912DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2855326PMC
April 2010

Similar regulatory logic in Ciona intestinalis for two Wnt pathway modulators, ROR and SFRP-1/5.

Dev Biol 2009 May 25;329(2):364-73. Epub 2009 Feb 25.

INRA "Morphogenèse du Système Nerveux des Chordés" Group, DEPSN, UPR2197, Institut Fessard, CNRS, 1 Avenue de la Terrasse, 91198 GIF SUR YVETTE, France.

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http://dx.doi.org/10.1016/j.ydbio.2009.02.018DOI Listing
May 2009

Text-mining assisted regulatory annotation.

Genome Biol 2008 13;9(2):R31. Epub 2008 Feb 13.

Laboratory of Neurogenetics, Department of Molecular and Developmental Genetics, VIB, Leuven, B-3000, Belgium.

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http://dx.doi.org/10.1186/gb-2008-9-2-r31DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2374703PMC
May 2008