Mauro Delorenzi

Mauro Delorenzi

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Mauro Delorenzi

Publications by authors named "Mauro Delorenzi"

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Type I interferon/IRF7 axis instigates chemotherapy-induced immunological dormancy in breast cancer.

Oncogene 2019 04 13;38(15):2814-2829. Epub 2018 Dec 13.

Pathology Unit, Department of Oncology, Microbiology and Immunology (OMI), Faculty of Science and Medicine, University of Fribourg, 1700, Fribourg, Switzerland.

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http://dx.doi.org/10.1038/s41388-018-0624-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6477891PMC
April 2019

Differential regulation of RNA polymerase III genes during liver regeneration.

Nucleic Acids Res 2019 02;47(4):1786-1796

Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1093/nar/gky1282DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393285PMC
February 2019

Endothelial Calcineurin Signaling Restrains Metastatic Outgrowth by Regulating Bmp2.

Cell Rep 2019 Jan;26(5):1227-1241.e6

Department of Oncology, University of Lausanne, Lausanne 1011, Switzerland; Ludwig Institute for Cancer Research Lausanne, Lausanne, Switzerland; Division of Experimental Pathology, CHUV, Epalinges 1066, Switzerland; Swiss Institute for Cancer Research, École Polytechnique Fédérale de Lausanne, Lausanne 1015, Switzerland. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247193002
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http://dx.doi.org/10.1016/j.celrep.2019.01.016DOI Listing
January 2019

Context-based retrieval of functional modules in protein-protein interaction networks.

Brief Bioinform 2018 09;19(5):995-1007

Bioinformatics Core Facility at the Swiss Institute of Bioinformatics (SIB).

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http://dx.doi.org/10.1093/bib/bbx029DOI Listing
September 2018

Mutant and histological heterogeneity define metabolic subtypes of hepatoblastoma.

EMBO Mol Med 2017 11;9(11):1589-1604

Swiss Institute for Experimental Cancer Research, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland

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http://dx.doi.org/10.15252/emmm.201707814DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5666308PMC
November 2017

RIP4 inhibits STAT3 signaling to sustain lung adenocarcinoma differentiation.

Cell Death Differ 2017 10 2;24(10):1761-1771. Epub 2017 Jun 2.

Swiss Institute for Experimental Cancer Research, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne CH-1015, Switzerland.

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http://dx.doi.org/10.1038/cdd.2017.81DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5596425PMC
October 2017

The Transcription Factor Tcf1 Contributes to Normal NK Cell Development and Function by Limiting the Expression of Granzymes.

Cell Rep 2017 07;20(3):613-626

Ludwig Cancer Research Center, Department of Fundamental Oncology, University of Lausanne, 1066 Epalinges, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.06.071DOI Listing
July 2017

Increased ex vivo antigen presentation profile of B cells in multiple sclerosis.

Mult Scler 2017 05 8;23(6):802-809. Epub 2016 Aug 8.

Laboratory of Neuroimmunology, Neuroscience Research Centre, Department of Clinical Neurosciences, Lausanne University Hospital, Lausanne, Switzerland/Service of Neurology, Department of Clinical Neurosciences, Lausanne University Hospital, Lausanne, Switzerland.

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http://dx.doi.org/10.1177/1352458516664210DOI Listing
May 2017

Caloric dose-responsive genes in blood cells differentiate the metabolic status of obese men.

J Nutr Biochem 2017 05 4;43:156-165. Epub 2017 Mar 4.

Agroscope, Federal Department of Economic Affairs, Education and Research EAER, CH-3003 Bern, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.jnutbio.2017.02.012DOI Listing
May 2017

Broad and Conserved Immune Regulation by Genetically Heterogeneous Melanoma Cells.

Cancer Res 2017 04 19;77(7):1623-1636. Epub 2017 Jan 19.

Ludwig Cancer Research and Department of Oncology, University of Lausanne, Lausanne, Switzerland.

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http://dx.doi.org/10.1158/0008-5472.CAN-16-2680DOI Listing
April 2017

A Well-Controlled Experimental System to Study Interactions of Cytotoxic T Lymphocytes with Tumor Cells.

Front Immunol 2016 30;7:326. Epub 2016 Aug 30.

Department of Oncology, Ludwig Center for Cancer Research, University of Lausanne , Epalinges , Switzerland.

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http://dx.doi.org/10.3389/fimmu.2016.00326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5003846PMC
September 2016

High antigen levels induce an exhausted phenotype in a chronic infection without impairing T cell expansion and survival.

J Exp Med 2016 08 25;213(9):1819-34. Epub 2016 Jul 25.

Swiss Vaccine Research Institute, 1066 Epalinges, Switzerland Division of Immunology and Allergy, Department of Medicine, Lausanne University Hospital, 1011 Lausanne, Switzerland

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http://dx.doi.org/10.1084/jem.20150598DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4995073PMC
August 2016

70-Gene Signature as an Aid to Treatment Decisions in Early-Stage Breast Cancer.

N Engl J Med 2016 Aug;375(8):717-29

From Champalimaud Clinical Center-Champalimaud Foundation, Lisbon, Portugal (F.C.); Helen Diller Family Comprehensive Cancer Center, University of California, San Francisco (L.J.V.); European Organization for Research and Treatment of Cancer Headquarters (J.B., L. Slaets, V.G., B.M., K.T.), Breast International Group Headquarters (T.G., C. Straehle), and Institut Jules Bordet, Université Libre de Bruxelles (C. Sotiriou, M.P.), Brussels, and Centre Hospitalier Universitaire Université Catholique de Louvain, Namur (P.V.) - both in Belgium; University of Milan and Istituto Europeo di Oncologia (G.V.) and Europa Donna-European Breast Cancer Coalition (S.K.), Milan, and Azienda Istituti Ospitalieri di Cremona, Cremona (R.P.) - both in Italy; Gustave Roussy, Villejuif (S.D., M.S.), Institut Curie Paris Sciences et Lettres, Université Paris Descartes, Sorbonne Paris Cité, Paris (J.-Y.P.). Institut Curie-Hôpital Rene Huguenin, Saint-Cloud (E.B.), and Centre Georges-Francois-Leclerc, Dijon (S.C.) - all in France; Swiss Institute of Bioinformatics and University of Lausanne, Lausanne, Switzerland (M.D.); Agendia (A.M.G., L. Stork) and the Netherlands Cancer Institute (R.B., E.R.), Amsterdam, Alrijne Ziekenhuis, Rijnland Leiderdorp (P.A.N.), Jeroen Bosch Hospital, 's-Hertogenbosch (T.J.S.), and Medisch Centrum Alkmaar, Alkmaar (J.M.H.) - all in the Netherlands; Institute of Oncology, Ljubljana, Slovenia (E.M.); Evangelisches Krankenhaus Bethesda, Duisburg, Germany (U.N.); University of Texas Health Sciences Center, San Antonio (P.R.); Hospital Universitario Vall d'Hebron, Barcelona (I.T.R.); Imperial College London, London (G.T.); and University of Texas M.D. Anderson Cancer Center, Houston (A.M.T.).

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http://dx.doi.org/10.1056/NEJMoa1602253DOI Listing
August 2016

Reduced Expression of SMAD4 Is Associated with Poor Survival in Colon Cancer.

Clin Cancer Res 2016 06 9;22(12):3037-47. Epub 2016 Feb 9.

Division of Anatomic Pathology, Department of Surgical and Diagnostic Sciences, University of Genoa and IRCCS S. Martino/IST University Hospital, Genoa, Italy.

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http://dx.doi.org/10.1158/1078-0432.CCR-15-0939DOI Listing
June 2016

Sensitivity Analysis of the MGMT-STP27 Model and Impact of Genetic and Epigenetic Context to Predict the MGMT Methylation Status in Gliomas and Other Tumors.

J Mol Diagn 2016 05 27;18(3):350-361. Epub 2016 Feb 27.

Department of Neurosurgery, Lausanne University Hospital, Lausanne, Switzerland; Neuroscience Research Center, Lausanne University Hospital, Lausanne, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.jmoldx.2015.11.009DOI Listing
May 2016

Modulation of mTOR Signalling Triggers the Formation of Stem Cell-like Memory T Cells.

EBioMedicine 2016 Feb 16;4:50-61. Epub 2016 Jan 16.

Translational Tumor Immunology Group, Ludwig Cancer Research (LICR), University of Lausanne (UNIL), 1066 Epalinges, Vaud, Switzerland; Department of Oncology, Lausanne University Hospital (CHUV), 1011 Lausanne, Vaud, Switzerland.

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http://dx.doi.org/10.1016/j.ebiom.2016.01.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4776068PMC
February 2016

BCL9/9L-β-catenin Signaling is Associated With Poor Outcome in Colorectal Cancer.

EBioMedicine 2015 Dec 30;2(12):1932-43. Epub 2015 Oct 30.

Swiss Institute for Experimental Cancer Research (ISREC), Ecole Polytechnique Fédérale de Lausanne (EPFL), School of Life Sciences, CH-1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1016/j.ebiom.2015.10.030DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4703711PMC
December 2015

Clinical Application of Prognostic Gene Expression Signature in Fusion Gene-Negative Rhabdomyosarcoma: A Report from the Children's Oncology Group.

Clin Cancer Res 2015 Oct;21(20):4733-9

Pauline Allen Gill Center for Cancer and Blood Disorders, Children's Medical Center, Dallas, Texas. Department of Pediatrics, Division of Hematology/Oncology, University of Texas Southwestern Medical Center, Dallas, Texas.

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http://dx.doi.org/10.1158/1078-0432.CCR-14-3326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4610152PMC
October 2015

Genomics and drug profiling of fatal TCF3-HLF-positive acute lymphoblastic leukemia identifies recurrent mutation patterns and therapeutic options.

Nat Genet 2015 Sep 27;47(9):1020-1029. Epub 2015 Jul 27.

Department of Vertebrate Genomics, Max Planck Institute for Molecular Genetics, Berlin, Germany.

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http://dx.doi.org/10.1038/ng.3362DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4603357PMC
September 2015

Genome-wide RNA profiling of long-lasting stem cell-like memory CD8 T cells induced by Yellow Fever vaccination in humans.

Genom Data 2015 Sep 2;5:297-301. Epub 2015 Jul 2.

Ludwig Cancer Center, University of Lausanne, Switzerland ; Department of Oncology, Lausanne University Hospital (CHUV), Switzerland.

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https://linkinghub.elsevier.com/retrieve/pii/S22135960150013
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http://dx.doi.org/10.1016/j.gdata.2015.06.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4583680PMC
September 2015

A 12-gene signature to distinguish colon cancer patients with better clinical outcome following treatment with 5-fluorouracil or FOLFIRI.

J Pathol Clin Res 2015 Jul 9;1(3):160-72. Epub 2015 Apr 9.

Department of molecular biology medical biochemistry and pathology Laval University Centre de Recherche du CHU de Québec, Centre Hospitalier de l'Université Laval Québec Canada.

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http://dx.doi.org/10.1002/cjp2.17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4939880PMC
July 2015

Long-lasting stem cell-like memory CD8+ T cells with a naïve-like profile upon yellow fever vaccination.

Sci Transl Med 2015 Apr;7(282):282ra48

Ludwig Cancer Center, University of Lausanne, Epalinges CH-1066, Switzerland. Department of Oncology, University Hospital of Lausanne (Centre Hospitalier Universitaire Vaudois), Lausanne CH-1011, Switzerland.

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http://stm.sciencemag.org/lookup/doi/10.1126/scitranslmed.aa
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http://dx.doi.org/10.1126/scitranslmed.aaa3700DOI Listing
April 2015

Response.

J Natl Cancer Inst 2015 Mar 10;107(5). Epub 2015 Mar 10.

SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland (MD); Ludwig Center for Cancer Research and Oncology Department, University of Lausanne, Lausanne, Switzerland (MD); Digestive Oncology Unit and Center for Human Genetics, University Hospital Gasthuisberg, Leuven, Belgium (ST); Oncosurgery, Geneva University Hospital Geneva, Switzerland (AR); Department of Pathology, Lausanne University, Lausanne, Switzerland (FTB).

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http://dx.doi.org/10.1093/jnci/djv056DOI Listing
March 2015

Batch effect confounding leads to strong bias in performance estimates obtained by cross-validation.

PLoS One 2014 26;9(6):e100335. Epub 2014 Jun 26.

SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland; Ludwig Center for Cancer Research, University of Lausanne, Lausanne, Switzerland; Oncology Department, University of Lausanne, Lausanne, Switzerland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100335PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4072626PMC
February 2015

Test of four colon cancer risk-scores in formalin fixed paraffin embedded microarray gene expression data.

J Natl Cancer Inst 2014 Oct 22;106(10). Epub 2014 Sep 22.

SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland (AFDN, SR, VP, PW, EB, MD); Digestive Oncology Unit and Center for Human Genetics, University Hospital Gasthuisberg, Leuven, Belgium (ST); Department of Pathology, Lausanne University, Lausanne, Switzerland (PY, FB); Oncology Research Unit, Worldwide Research and Development, Pfizer Inc., La Jolla, CA (TX, HE, AP, MM, EM, WS); Oncosurgery, Geneva University Hospital Geneva, Switzerland (AR); SAKK Coordination Center, Bern, Switzerland (AR); Ludwig Center for Cancer Research (MD) and Oncology Department, University of Lausanne, Lausanne, Switzerland (MD).

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http://dx.doi.org/10.1093/jnci/dju247DOI Listing
October 2014

PROX1 promotes metabolic adaptation and fuels outgrowth of Wnt(high) metastatic colon cancer cells.

Cell Rep 2014 Sep 18;8(6):1957-1973. Epub 2014 Sep 18.

Department of Oncology, Centre Hospitalier Universitaire Vaudois (CHUV) and University of Lausanne, Lausanne 1066, Switzerland; Department of Biochemistry, University of Lausanne, Lausanne 1066, Switzerland; Swiss Institute for Cancer Research, EPFL, Lausanne 1015, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2014.08.041DOI Listing
September 2014

The Hippo transducer YAP1 transforms activated satellite cells and is a potent effector of embryonal rhabdomyosarcoma formation.

Cancer Cell 2014 Aug 31;26(2):273-87. Epub 2014 Jul 31.

Stem Cell Program, Boston Children's Hospital, Boston, MA 02115, USA; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138, USA; Harvard Stem Cell Institute, Cambridge, MA 02138, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccr.2014.05.029DOI Listing
August 2014

Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization.

Genome Res 2014 Jul 7;24(7):1157-68. Epub 2014 Apr 7.

Bioinformatics Core Facility, SIB Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland; Department of Oncology and the Ludwig Center for Cancer Research, Faculty of Biology and Medicine, University of Lausanne, 1011 Lausanne, Switzerland.

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http://genome.cshlp.org/cgi/doi/10.1101/gr.168260.113
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http://dx.doi.org/10.1101/gr.168260.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079971PMC
July 2014

Context-dependent interpretation of the prognostic value of BRAF and KRAS mutations in colorectal cancer.

BMC Cancer 2013 Sep 27;13:439. Epub 2013 Sep 27.

Institute of Biostatistics and Analyses, Masaryk University, Kotlarska 2, Brno, 611 37, Czech Republic.

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http://dx.doi.org/10.1186/1471-2407-13-439DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3849526PMC
September 2013

A comparison of methods for differential expression analysis of RNA-seq data.

BMC Bioinformatics 2013 Mar 9;14:91. Epub 2013 Mar 9.

Bioinformatics Core Facility, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-14-91DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608160PMC
March 2013

microRNAs in colon cancer: a roadmap for discovery.

FEBS Lett 2012 Sep;586(19):3000-7

Bioinformatics Core Facility, Swiss Institute of Bioinformatics, Lausanne, Switzerland.

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http://dx.doi.org/10.1016/j.febslet.2012.07.048DOI Listing
September 2012

New frontiers in therapeutic resistance in cancer.

Expert Rev Anticancer Ther 2012 Jul;12(7):877-9

Falck Division of Medical Oncology, Department of Oncology, Ospedale Niguarda Ca' Granda, Piazza Ospedale Maggiore, 3 20162 Milano, Italy.

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http://dx.doi.org/10.1586/era.12.71DOI Listing
July 2012

DNA fingerprinting of glioma cell lines and considerations on similarity measurements.

Neuro Oncol 2012 Jun 8;14(6):701-11. Epub 2012 May 8.

Laboratory of Brain Tumor Biology and Genetics, Department of Clinical Neurosciences, University Center of Legal Medicine, Lausanne, Switzerland.

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http://dx.doi.org/10.1093/neuonc/nos072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367844PMC
June 2012

Identification of a poor-prognosis BRAF-mutant-like population of patients with colon cancer.

J Clin Oncol 2012 Apr 5;30(12):1288-95. Epub 2012 Mar 5.

Bioinformatics Core Facility, Swiss Institute of Bioinformatics, Quartier Sorge, Genopode, CH-1015 Lausanne, Switzerland.

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http://ascopubs.org/doi/10.1200/JCO.2011.39.5814
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http://dx.doi.org/10.1200/JCO.2011.39.5814DOI Listing
April 2012

Identification of prognostic molecular features in the reactive stroma of human breast and prostate cancer.

PLoS One 2011 18;6(5):e18640. Epub 2011 May 18.

Institute of Pathology, CHUV, and Faculty of Biology and Medicine, University of Lausanne, Lausanne, Switzerland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0018640PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3097176PMC
September 2011

Rgtsp: a generalized top scoring pairs package for class prediction.

Bioinformatics 2011 Jun 19;27(12):1729-30. Epub 2011 Apr 19.

Bioinformatics Core Facility, Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1093/bioinformatics/btr233DOI Listing
June 2011

Detecting epistasis with restricted response patterns in pairs of biallelic loci.

Ann Hum Genet 2011 Jan 30;75(1):133-45. Epub 2010 Nov 30.

Swiss Institute of Bioinformatics, Lausanne, Switzerland.

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http://dx.doi.org/10.1111/j.1469-1809.2010.00625.xDOI Listing
January 2011

Functional analysis: evaluation of response intensities--tailoring ANOVA for lists of expression subsets.

BMC Bioinformatics 2010 Oct 13;11:510. Epub 2010 Oct 13.

Bioinformatics and Biostatistics Laboratory, Molecular Biology Research Unit (URBM), FUNDP University of Namur, Namur, Belgium.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-11-510DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2964684PMC
October 2010

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.

Authors:
Leming Shi Gregory Campbell Wendell D Jones Fabien Campagne Zhining Wen Stephen J Walker Zhenqiang Su Tzu-Ming Chu Federico M Goodsaid Lajos Pusztai John D Shaughnessy André Oberthuer Russell S Thomas Richard S Paules Mark Fielden Bart Barlogie Weijie Chen Pan Du Matthias Fischer Cesare Furlanello Brandon D Gallas Xijin Ge Dalila B Megherbi W Fraser Symmans May D Wang John Zhang Hans Bitter Benedikt Brors Pierre R Bushel Max Bylesjo Minjun Chen Jie Cheng Jing Cheng Jeff Chou Timothy S Davison Mauro Delorenzi Youping Deng Viswanath Devanarayan David J Dix Joaquin Dopazo Kevin C Dorff Fathi Elloumi Jianqing Fan Shicai Fan Xiaohui Fan Hong Fang Nina Gonzaludo Kenneth R Hess Huixiao Hong Jun Huan Rafael A Irizarry Richard Judson Dilafruz Juraeva Samir Lababidi Christophe G Lambert Li Li Yanen Li Zhen Li Simon M Lin Guozhen Liu Edward K Lobenhofer Jun Luo Wen Luo Matthew N McCall Yuri Nikolsky Gene A Pennello Roger G Perkins Reena Philip Vlad Popovici Nathan D Price Feng Qian Andreas Scherer Tieliu Shi Weiwei Shi Jaeyun Sung Danielle Thierry-Mieg Jean Thierry-Mieg Venkata Thodima Johan Trygg Lakshmi Vishnuvajjala Sue Jane Wang Jianping Wu Yichao Wu Qian Xie Waleed A Yousef Liang Zhang Xuegong Zhang Sheng Zhong Yiming Zhou Sheng Zhu Dhivya Arasappan Wenjun Bao Anne Bergstrom Lucas Frank Berthold Richard J Brennan Andreas Buness Jennifer G Catalano Chang Chang Rong Chen Yiyu Cheng Jian Cui Wendy Czika Francesca Demichelis Xutao Deng Damir Dosymbekov Roland Eils Yang Feng Jennifer Fostel Stephanie Fulmer-Smentek James C Fuscoe Laurent Gatto Weigong Ge Darlene R Goldstein Li Guo Donald N Halbert Jing Han Stephen C Harris Christos Hatzis Damir Herman Jianping Huang Roderick V Jensen Rui Jiang Charles D Johnson Giuseppe Jurman Yvonne Kahlert Sadik A Khuder Matthias Kohl Jianying Li Li Li Menglong Li Quan-Zhen Li Shao Li Zhiguang Li Jie Liu Ying Liu Zhichao Liu Lu Meng Manuel Madera Francisco Martinez-Murillo Ignacio Medina Joseph Meehan Kelci Miclaus Richard A Moffitt David Montaner Piali Mukherjee George J Mulligan Padraic Neville Tatiana Nikolskaya Baitang Ning Grier P Page Joel Parker R Mitchell Parry Xuejun Peng Ron L Peterson John H Phan Brian Quanz Yi Ren Samantha Riccadonna Alan H Roter Frank W Samuelson Martin M Schumacher Joseph D Shambaugh Qiang Shi Richard Shippy Shengzhu Si Aaron Smalter Christos Sotiriou Mat Soukup Frank Staedtler Guido Steiner Todd H Stokes Qinglan Sun Pei-Yi Tan Rong Tang Zivana Tezak Brett Thorn Marina Tsyganova Yaron Turpaz Silvia C Vega Roberto Visintainer Juergen von Frese Charles Wang Eric Wang Junwei Wang Wei Wang Frank Westermann James C Willey Matthew Woods Shujian Wu Nianqing Xiao Joshua Xu Lei Xu Lun Yang Xiao Zeng Jialu Zhang Li Zhang Min Zhang Chen Zhao Raj K Puri Uwe Scherf Weida Tong Russell D Wolfinger

Nat Biotechnol 2010 Aug 30;28(8):827-38. Epub 2010 Jul 30.

National Center for Toxicological Research, US Food and Drug Administration, Jefferson, Arkansas, USA.

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http://dx.doi.org/10.1038/nbt.1665DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3315840PMC
August 2010

Bcl9/Bcl9l are critical for Wnt-mediated regulation of stem cell traits in colon epithelium and adenocarcinomas.

Cancer Res 2010 Aug 3;70(16):6619-28. Epub 2010 Aug 3.

Swiss Institute for Experimental Cancer Research, Swiss National Center of Competence in Research Molecular Oncology, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.

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http://dx.doi.org/10.1158/0008-5472.CAN-10-0148DOI Listing
August 2010

The effect of translocation-induced nuclear reorganization on gene expression.

Genome Res 2010 May 8;20(5):554-64. Epub 2010 Mar 8.

Center for Integrative Genomics, University of Lausanne, Lausanne CH-1015, Switzerland.

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http://dx.doi.org/10.1101/gr.103622.109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860158PMC
May 2010

Relationship between estrogen receptor alpha location and gene induction reveals the importance of downstream sites and cofactors.

BMC Genomics 2009 Aug 18;10:381. Epub 2009 Aug 18.

School of Life Sciences, Swiss Institute for Experimental Cancer Research (ISREC), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland.

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http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
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http://dx.doi.org/10.1186/1471-2164-10-381DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2907696PMC
August 2009

Modulation of angiogenic and inflammatory response in glioblastoma by hypoxia.

PLoS One 2009 Jun 17;4(6):e5947. Epub 2009 Jun 17.

Laboratory of Brain Tumor Biology and Genetics, University Hospital Lausanne (CHUV) and University of Lausanne, Lausanne, Switzerland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0005947PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2694268PMC
June 2009

Selecting control genes for RT-QPCR using public microarray data.

BMC Bioinformatics 2009 Feb 2;10:42. Epub 2009 Feb 2.

Bioinformatics Core Facility, Swiss Institute of Bioinformatics, CH-1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1186/1471-2105-10-42DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2640357PMC
February 2009

A stroma-related gene signature predicts resistance to neoadjuvant chemotherapy in breast cancer.

Nat Med 2009 Jan 4;15(1):68-74. Epub 2009 Jan 4.

Swiss National Centre of Competence in Research Molecular Oncology, Swiss Institute for Experimental Cancer Research, Ecole Polytechnique Fédérale de Lausanne, School of Life Sciences, Epalinges s/Lausanne, Switzerland.

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http://dx.doi.org/10.1038/nm.1908DOI Listing
January 2009