Mattias Jakobsson

Mattias Jakobsson

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Mattias Jakobsson

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Genetic Affinities among Southern Africa Hunter-Gatherers and the Impact of Admixing Farmer and Herder Populations.

Mol Biol Evol 2019 09;36(9):1849-1861

Human Evolution, Department of Organismal Biology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1093/molbev/msz089DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6735883PMC
September 2019

McSwan: A joint site frequency spectrum method to detect and date selective sweeps across multiple population genomes.

Mol Ecol Resour 2019 Jan 22;19(1):283-295. Epub 2018 Nov 22.

EPHE, PSL Research University, CNRS, University of Montpellier, Montpellier SupAgro, IRD, INRA, UMR:5175 CEFE, Montpellier, France.

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http://doi.wiley.com/10.1111/1755-0998.12957
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http://dx.doi.org/10.1111/1755-0998.12957DOI Listing
January 2019

Genomic and Strontium Isotope Variation Reveal Immigration Patterns in a Viking Age Town.

Curr Biol 2018 09 23;28(17):2730-2738.e10. Epub 2018 Aug 23.

Archaeological Research Laboratory, Department of Archaeology and Classical Studies, University of Stockholm, Lilla Frescativägen 7, 106 91 Stockholm, Sweden; Science for Life Laboratory, Tomtebodavägen 23A, 17165 Solna, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2018.06.053DOI Listing
September 2018

Tales of Human Migration, Admixture, and Selection in Africa.

Annu Rev Genomics Hum Genet 2018 08 4;19:405-428. Epub 2018 May 4.

Human Evolution, Department of Organismal Biology, Uppsala University, SE-752 36 Uppsala, Sweden; email: ,

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http://dx.doi.org/10.1146/annurev-genom-083117-021759DOI Listing
August 2018

Estimating genetic kin relationships in prehistoric populations.

PLoS One 2018 23;13(4):e0195491. Epub 2018 Apr 23.

Uppsala University, Evolutionary Biology Centre, Department of Organismal Biology, Norbyvägen 18C, SE-752 36 Uppsala, Sweden.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0195491PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5912749PMC
July 2018

Patterns of variation in cis-regulatory regions: examining evidence of purifying selection.

BMC Genomics 2018 01 26;19(1):95. Epub 2018 Jan 26.

Department of Organismal Biology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1186/s12864-017-4422-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5787233PMC
January 2018

A female Viking warrior confirmed by genomics.

Am J Phys Anthropol 2017 12 8;164(4):853-860. Epub 2017 Sep 8.

Osteoarchaeological Research Laboratory, Department of Archaeology and Classical Studies, Stockholm University, Lilla Frescativägen 7, 106 91 Stockholm, Sweden.

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http://dx.doi.org/10.1002/ajpa.23308DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5724682PMC
December 2017

Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago.

Science 2017 11 28;358(6363):652-655. Epub 2017 Sep 28.

Department of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18C, SE-752 36 Uppsala, Sweden.

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http://dx.doi.org/10.1126/science.aao6266DOI Listing
November 2017

Genomic Analyses of Pre-European Conquest Human Remains from the Canary Islands Reveal Close Affinity to Modern North Africans.

Curr Biol 2017 Nov 26;27(21):3396-3402.e5. Epub 2017 Oct 26.

Department of Archaeology and Classical Studies, Stockholm University, 10691 Stockholm, Sweden; Research Centre in Evolutionary Anthropology and Palaeoecology, School of Natural Sciences and Psychology, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, UK. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2017.09.059DOI Listing
November 2017

Reply to Lazaridis and Reich: Robust model-based inference of male-biased admixture during Bronze Age migration from the Pontic-Caspian Steppe.

Proc Natl Acad Sci U S A 2017 05 5;114(20):E3875-E3877. Epub 2017 May 5.

Department of Organismal Biology, Uppsala University, 75236 Uppsala, Sweden;

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http://dx.doi.org/10.1073/pnas.1704442114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5441823PMC
May 2017

Adaptation to infectious disease exposure in indigenous Southern African populations.

Proc Biol Sci 2017 Apr;284(1852)

Department of Organismal Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18C, 752 36 Uppsala, Sweden

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http://dx.doi.org/10.1098/rspb.2017.0226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5394675PMC
April 2017

Ancient X chromosomes reveal contrasting sex bias in Neolithic and Bronze Age Eurasian migrations.

Proc Natl Acad Sci U S A 2017 03 21;114(10):2657-2662. Epub 2017 Feb 21.

Department of Organismal Biology, Uppsala University, 75236 Uppsala, Sweden;

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http://dx.doi.org/10.1073/pnas.1616392114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5347611PMC
March 2017

Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5 millennium BC.

BMC Evol Biol 2017 03 16;17(1):80. Epub 2017 Mar 16.

Molecular Biology Techniques Laboratory, Faculty of Biology, Adam Mickiewicz University in Poznań, Umultowska 89, 61-614, Poznań, Poland.

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http://dx.doi.org/10.1186/s12862-017-0924-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5356262PMC
March 2017

Investigating kinship of Neolithic post-LBK human remains from Krusza Zamkowa, Poland using ancient DNA.

Forensic Sci Int Genet 2017 01 14;26:30-39. Epub 2016 Oct 14.

Molecular Biology Techniques Laboratory, Faculty of Biology, Adam Mickiewicz University in Poznań, Umultowska 89, 61-614 Poznań, Poland. Electronic address:

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http://dx.doi.org/10.1016/j.fsigen.2016.10.008DOI Listing
January 2017

Tracing the peopling of the world through genomics.

Nature 2017 01;541(7637):302-310

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, 1350 Copenhagen K, Denmark.

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http://dx.doi.org/10.1038/nature21347DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5772775PMC
January 2017

The disappearing San of southeastern Africa and their genetic affinities.

Hum Genet 2016 12 20;135(12):1365-1373. Epub 2016 Sep 20.

Division of Human Genetics, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, and National Health Laboratory Service, Johannesburg, South Africa.

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http://dx.doi.org/10.1007/s00439-016-1729-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5065584PMC
December 2016

Genes mirror migrations and cultures in prehistoric Europe-a population genomic perspective.

Curr Opin Genet Dev 2016 Dec 27;41:115-123. Epub 2016 Sep 27.

Department of Organismal Biology and SciLife Lab, Evolutionary Biology Centre, Uppsala University, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.gde.2016.09.004DOI Listing
December 2016

Inferring Past Effective Population Size from Distributions of Coalescent Times.

Genetics 2016 11 16;204(3):1191-1206. Epub 2016 Sep 16.

Department of Organismal Biology, Uppsala University, 75236 Uppsala, Sweden

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http://dx.doi.org/10.1534/genetics.115.185058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5105851PMC
November 2016

Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc.

Proc Natl Acad Sci U S A 2016 07 20;113(27):7485-90. Epub 2016 Jun 20.

Department of Anthropology, University of Oklahoma, Norman, OK 73019; Institute of Evolutionary Medicine, University of Zurich, Zurich CH-8057, Switzerland

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http://dx.doi.org/10.1073/pnas.1520844113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4941446PMC
July 2016

Genomic Evidence Establishes Anatolia as the Source of the European Neolithic Gene Pool.

Curr Biol 2016 Jan 31;26(2):270-275. Epub 2015 Dec 31.

Department of Archaeology and Classical Studies, Stockholm University, Lilla Frescativägen 7, 114 18, Stockholm, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2015.12.019DOI Listing
January 2016

Clumpak: a program for identifying clustering modes and packaging population structure inferences across K.

Mol Ecol Resour 2015 Sep 27;15(5):1179-91. Epub 2015 Feb 27.

Department of Molecular Biology and Ecology of Plants, Tel Aviv University, Ramat Aviv, 69978, Israel.

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http://dx.doi.org/10.1111/1755-0998.12387DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4534335PMC
September 2015

POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.

Authors:
Maanasa Raghavan Matthias Steinrücken Kelley Harris Stephan Schiffels Simon Rasmussen Michael DeGiorgio Anders Albrechtsen Cristina Valdiosera María C Ávila-Arcos Anna-Sapfo Malaspinas Anders Eriksson Ida Moltke Mait Metspalu Julian R Homburger Jeff Wall Omar E Cornejo J Víctor Moreno-Mayar Thorfinn S Korneliussen Tracey Pierre Morten Rasmussen Paula F Campos Peter de Barros Damgaard Morten E Allentoft John Lindo Ene Metspalu Ricardo Rodríguez-Varela Josefina Mansilla Celeste Henrickson Andaine Seguin-Orlando Helena Malmström Thomas Stafford Suyash S Shringarpure Andrés Moreno-Estrada Monika Karmin Kristiina Tambets Anders Bergström Yali Xue Vera Warmuth Andrew D Friend Joy Singarayer Paul Valdes Francois Balloux Ilán Leboreiro Jose Luis Vera Hector Rangel-Villalobos Davide Pettener Donata Luiselli Loren G Davis Evelyne Heyer Christoph P E Zollikofer Marcia S Ponce de León Colin I Smith Vaughan Grimes Kelly-Anne Pike Michael Deal Benjamin T Fuller Bernardo Arriaza Vivien Standen Maria F Luz Francois Ricaut Niede Guidon Ludmila Osipova Mikhail I Voevoda Olga L Posukh Oleg Balanovsky Maria Lavryashina Yuri Bogunov Elza Khusnutdinova Marina Gubina Elena Balanovska Sardana Fedorova Sergey Litvinov Boris Malyarchuk Miroslava Derenko M J Mosher David Archer Jerome Cybulski Barbara Petzelt Joycelynn Mitchell Rosita Worl Paul J Norman Peter Parham Brian M Kemp Toomas Kivisild Chris Tyler-Smith Manjinder S Sandhu Michael Crawford Richard Villems David Glenn Smith Michael R Waters Ted Goebel John R Johnson Ripan S Malhi Mattias Jakobsson David J Meltzer Andrea Manica Richard Durbin Carlos D Bustamante Yun S Song Rasmus Nielsen Eske Willerslev

Science 2015 Aug 21;349(6250):aab3884. Epub 2015 Jul 21.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.aab3884DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733658PMC
August 2015

HaploPOP: a software that improves population assignment by combining markers into haplotypes.

BMC Bioinformatics 2015 Jul 31;16:242. Epub 2015 Jul 31.

Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1186/s12859-015-0661-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4521458PMC
July 2015

Human adaptation to arsenic-rich environments.

Mol Biol Evol 2015 Jun 3;32(6):1544-55. Epub 2015 Mar 3.

Unit of Metals and Health, Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden

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http://dx.doi.org/10.1093/molbev/msv046DOI Listing
June 2015

Ancient mitochondrial DNA from the northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process.

Philos Trans R Soc Lond B Biol Sci 2015 Jan;370(1660):20130373

Department of Evolutionary Biology, Uppsala University, Norbyvägen 18D, 752 36 Uppsala, Sweden Archaeological Research Laboratory, Department of Archaeology and Classical Studies, Stockholm University, 106 91 Stockholm, Sweden.

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http://dx.doi.org/10.1098/rstb.2013.0373DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4275881PMC
January 2015

Genetic variation reveals large-scale population expansion and migration during the expansion of Bantu-speaking peoples.

Proc Biol Sci 2014 Oct 10;281(1793). Epub 2014 Sep 10.

Department of Evolutionary Biology, Evolutionary Biology Centre, Norbyvägen 18D, Uppsala 752 36, Sweden Science for Life Laboratory, Uppsala University, Norbyvägen 18D, Uppsala 752 36, Sweden

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http://dx.doi.org/10.1098/rspb.2014.1448DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4173682PMC
October 2014

Investigating population history using temporal genetic differentiation.

Mol Biol Evol 2014 Sep 17;31(9):2516-27. Epub 2014 Jun 17.

Department of Evolutionary Biology, Uppsala University, Uppsala, SwedenScience for Life Laboratory, Uppsala, Sweden

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http://mbe.oxfordjournals.org/content/31/9/2516.full.pdf
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http://mbe.oxfordjournals.org/cgi/doi/10.1093/molbev/msu192
Publisher Site
http://dx.doi.org/10.1093/molbev/msu192DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4137715PMC
September 2014

Assessing the maximum contribution from ancient populations.

Mol Biol Evol 2014 May 3;31(5):1248-60. Epub 2014 Feb 3.

Department of Evolutionary Biology, Uppsala University, Norbyvägen, Sweden.

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http://dx.doi.org/10.1093/molbev/msu059DOI Listing
May 2014

Genomic diversity and admixture differs for Stone-Age Scandinavian foragers and farmers.

Science 2014 May 24;344(6185):747-50. Epub 2014 Apr 24.

Department of Evolutionary Biology, Uppsala University, Uppsala 752 36, Sweden. Science for Life Laboratory, Uppsala University, Uppsala 752 36, Sweden.

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http://dx.doi.org/10.1126/science.1253448DOI Listing
May 2014

Private haplotypes can reveal local adaptation.

BMC Genet 2014 May 22;15:61. Epub 2014 May 22.

Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1186/1471-2156-15-61DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4040116PMC
May 2014

Lactase persistence alleles reveal partial East African ancestry of southern African Khoe pastoralists.

Curr Biol 2014 Apr 3;24(8):852-8. Epub 2014 Apr 3.

Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 752 36 Uppsala, Sweden; Science for Life Laboratory, Uppsala University, Norbyvägen 18D, 752 36 Uppsala, Sweden. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2014.02.041DOI Listing
April 2014

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal.

Proc Natl Acad Sci U S A 2014 Feb 27;111(6):2229-34. Epub 2014 Jan 27.

Department of Evolutionary Biology and Science for Life Laboratory, Uppsala University, 75236 Uppsala, Sweden.

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http://dx.doi.org/10.1073/pnas.1318934111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3926038PMC
February 2014

Stronger signal of recent selection for lactase persistence in Maasai than in Europeans.

Eur J Hum Genet 2013 May 5;21(5):550-3. Epub 2012 Sep 5.

Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1038/ejhg.2012.199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3641376PMC
May 2013

The relationship between F(ST) and the frequency of the most frequent allele.

Genetics 2013 Feb 19;193(2):515-28. Epub 2012 Nov 19.

Department of Evolutionary Biology and Science for Life Laboratory, Uppsala University, SE-752 36, Uppsala, Sweden.

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http://dx.doi.org/10.1534/genetics.112.144758DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3567740PMC
February 2013

Possible positive selection for an arsenic-protective haplotype in humans.

Environ Health Perspect 2013 Jan 16;121(1):53-8. Epub 2012 Oct 16.

Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1289/ehp.1205504DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3553437PMC
January 2013

Genomic variation in seven Khoe-San groups reveals adaptation and complex African history.

Science 2012 Oct 20;338(6105):374-9. Epub 2012 Sep 20.

Department of Evolutionary Biology, Uppsala University, Norbyvägen 18D, 752 36 Uppsala, Sweden.

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http://dx.doi.org/10.1126/science.1227721DOI Listing
October 2012

Monte Carlo simulations of charge transport in organic systems with true off-diagonal disorder.

J Chem Phys 2012 Sep;137(11):114901

Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-58183 Linköping, Sweden.

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http://dx.doi.org/10.1063/1.4748796DOI Listing
September 2012

Resequencing data provide no evidence for a human bottleneck in Africa during the penultimate glacial period.

Mol Biol Evol 2012 Jul 1;29(7):1851-60. Epub 2012 Feb 1.

Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1093/molbev/mss061DOI Listing
July 2012

Population genetic nature of copy number variation.

Methods Mol Biol 2012 ;838:209-23

Department of Evolutionary Biology, EBC, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1007/978-1-61779-507-7_10DOI Listing
April 2012

Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe.

Science 2012 Apr;336(6080):466-9

Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1126/science.1216304DOI Listing
April 2012

Estimating demographic parameters from large-scale population genomic data using Approximate Bayesian Computation.

BMC Genet 2012 Mar 27;13:22. Epub 2012 Mar 27.

Department of Evolutionary Biology, EBC, Uppsala University, Norbyvägen 18D, Uppsala SE-75236, Sweden.

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http://dx.doi.org/10.1186/1471-2156-13-22DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368717PMC
March 2012

Genetic variation of 15 autosomal STR loci in various populations from southern Africa.

Forensic Sci Int Genet 2012 Jan 1;6(1):e20-1. Epub 2011 Feb 1.

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http://dx.doi.org/10.1016/j.fsigen.2010.12.013DOI Listing
January 2012

Combining markers into haplotypes can improve population structure inference.

Genetics 2012 Jan 25;190(1):159-74. Epub 2011 Aug 25.

Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, SE-752 36, Uppsala, Sweden.

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http://dx.doi.org/10.1534/genetics.111.131136DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3249356PMC
January 2012

Joint analysis of demography and selection in population genetics: where do we stand and where could we go?

Mol Ecol 2012 Jan 14;21(1):28-44. Epub 2011 Oct 14.

Laboratory of Evolutionary Genomics, CAS Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Chinese Academy of Sciences, Shanghai, China.

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http://dx.doi.org/10.1111/j.1365-294X.2011.05308.xDOI Listing
January 2012

Haplotype variation and genotype imputation in African populations.

Genet Epidemiol 2011 Dec;35(8):766-80

Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.

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http://dx.doi.org/10.1002/gepi.20626DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3568705PMC
December 2011

Archaic human ancestry in East Asia.

Proc Natl Acad Sci U S A 2011 Nov 31;108(45):18301-6. Epub 2011 Oct 31.

Department of Evolutionary Biology, Uppsala University, 75236 Uppsala, Sweden.

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http://dx.doi.org/10.1073/pnas.1108181108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3215044PMC
November 2011

Polaron effects and electric field dependence of the charge carrier mobility in conjugated polymers.

J Chem Phys 2011 Oct;135(13):134902

Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-58183 Linköping, Sweden.

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http://dx.doi.org/10.1063/1.3644931DOI Listing
October 2011

Genetic variation and population structure of Sudanese populations as indicated by 15 Identifiler sequence-tagged repeat (STR) loci.

Investig Genet 2011 May 4;2(1):12. Epub 2011 May 4.

Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, SE-752 36 Uppsala, Sweden.

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http://investigativegenetics.biomedcentral.com/articles/10.1
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http://dx.doi.org/10.1186/2041-2223-2-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118356PMC
May 2011

Estimation of population divergence times from non-overlapping genomic sequences: examples from dogs and wolves.

Mol Biol Evol 2011 Apr 21;28(4):1505-17. Epub 2010 Dec 21.

Department of Evolutionary Biology, Uppsala University, Uppsala, Sweden.

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http://dx.doi.org/10.1093/molbev/msq342DOI Listing
April 2011

Deep divergences of human gene trees and models of human origins.

Mol Biol Evol 2011 Feb 7;28(2):889-98. Epub 2010 Oct 7.

Laboratoire des Techniques de l'Ingénierie Médicale et de la Complexité (TIMC-IMAG), Centre National de la Recherche Scientifique (CNRS), Université Joseph Fourier (UJF), Grenoble, France.

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http://dx.doi.org/10.1093/molbev/msq265DOI Listing
February 2011

Sequence determinants of human microsatellite variability.

BMC Genomics 2009 Dec 16;10:612. Epub 2009 Dec 16.

Department of Human Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA.

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http://dx.doi.org/10.1186/1471-2164-10-612DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2806349PMC
December 2009

COMPASS: a program for generating serial samples under an infinite sites model.

Bioinformatics 2009 Nov 17;25(21):2845-7. Epub 2009 Sep 17.

Department of Evolutionary Biology, Uppsala University, Norbyvägen 18D, 75236 Uppsala, Sweden.

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http://dx.doi.org/10.1093/bioinformatics/btp534DOI Listing
November 2009

Hole mobility and transport mechanisms in lambda-DNA.

J Chem Phys 2009 Oct;131(15):155102

Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden.

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http://dx.doi.org/10.1063/1.3244677DOI Listing
October 2009

Out of Africa: modern human origins special feature: explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa.

Proc Natl Acad Sci U S A 2009 Sep 17;106(38):16057-62. Epub 2009 Aug 17.

Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109-2218, USA.

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http://dx.doi.org/10.1073/pnas.0903341106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752555PMC
September 2009

ADZE: a rarefaction approach for counting alleles private to combinations of populations.

Bioinformatics 2008 Nov 8;24(21):2498-504. Epub 2008 Sep 8.

Center for Computational Medicine and Biology, Department of Human Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA.

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http://dx.doi.org/10.1093/bioinformatics/btn478DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2732282PMC
November 2008

A Monte Carlo study of charge transfer in DNA.

J Chem Phys 2008 Sep;129(12):125102

Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden.

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http://dx.doi.org/10.1063/1.2981803DOI Listing
September 2008

The relationship between homozygosity and the frequency of the most frequent allele.

Genetics 2008 Aug 9;179(4):2027-36. Epub 2008 Aug 9.

Department of Human Genetics, Center for Computational Medicine and Biology, and the Life Sciences Institute, University of Michigan, Ann Arbor, Michigan 48109-2218, USA.

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http://dx.doi.org/10.1534/genetics.107.084772DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2516077PMC
August 2008

Demographic history of european populations of Arabidopsis thaliana.

PLoS Genet 2008 May 16;4(5):e1000075. Epub 2008 May 16.

Institut National Polytechnique de Grenoble, Grenoble, France.

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http://dx.doi.org/10.1371/journal.pgen.1000075DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2364639PMC
May 2008

CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure.

Bioinformatics 2007 Jul 7;23(14):1801-6. Epub 2007 May 7.

Center for Computational Medicine and Biology, Department of Human Genetics, University of Michigan, Ann Arbor, MI, USA.

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http://dx.doi.org/10.1093/bioinformatics/btm233DOI Listing
July 2007

The probability distribution under a population divergence model of the number of genetic founding lineages of a population or species.

Theor Popul Biol 2007 Jun 14;71(4):502-23. Epub 2007 Jan 14.

Bioinformatics Program, Department of Human Genetics, University of Michigan, 2017 Palmer Commons, 100 Washtenaw Ave, Ann Arbor, MI 48109-2218, USA.

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http://dx.doi.org/10.1016/j.tpb.2007.01.004DOI Listing
June 2007

Evolution of chloroplast mononucleotide microsatellites in Arabidopsis thaliana.

Theor Appl Genet 2007 Jan 23;114(2):223-35. Epub 2006 Nov 23.

Department of Cell and Organism Biology, Genetics, Lund University, Lund, Sweden.

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http://dx.doi.org/10.1007/s00122-006-0425-9DOI Listing
January 2007

A worldwide survey of haplotype variation and linkage disequilibrium in the human genome.

Nat Genet 2006 Nov 22;38(11):1251-60. Epub 2006 Oct 22.

Department of Human Genetics, University of Chicago, 920 East 58th Street, Chicago, Illinois 60637, USA.

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http://dx.doi.org/10.1038/ng1911DOI Listing
November 2006

Mode of reproduction in Arabidopsis suecica.

Hereditas 2004 ;141(3):313-7

Department of Cell and Organism Biology, Genetics, Lund University, Lund, Sweden.

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http://dx.doi.org/10.1111/j.1601-5223.2004.01833.xDOI Listing
June 2006

A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markers.

Mol Biol Evol 2006 Jun 20;23(6):1217-31. Epub 2006 Mar 20.

Bioinformatics Program, Department of Human Genetics, University of Michigan, USA.

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http://academic.oup.com/mbe/article/23/6/1217/1055343/A-Uniq
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http://dx.doi.org/10.1093/molbev/msk006DOI Listing
June 2006