Matti Kankainen

Matti Kankainen

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Matti Kankainen

Matti Kankainen

Publications by authors named "Matti Kankainen"

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Exome Sequencing Identifies Susceptibility Loci for Sarcoidosis Prognosis.

Front Immunol 2019 24;10:2964. Epub 2019 Dec 24.

Transplantation Laboratory, Department of Pathology, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.3389/fimmu.2019.02964DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6937869PMC
December 2019

Donor Simvastatin Treatment in Heart Transplantation.

Circulation 2019 08 29;140(8):627-640. Epub 2019 Jul 29.

Transplantation Laboratory (A.I.N., E.J.H., R.T., R.K., K.D., S.O.S., K.B.L.), University of Helsinki and Helsinki University Hospital, Finland.

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http://dx.doi.org/10.1161/CIRCULATIONAHA.119.039932DOI Listing
August 2019

Birch pollen allergen immunotherapy reprograms nasal epithelial transcriptome and recovers microbial diversity.

J Allergy Clin Immunol 2019 Jun 12;143(6):2293-2296.e11. Epub 2019 Feb 12.

Haartman Institute, University of Helsinki, Helsinki, Finland; Skin and Allergy Hospital, University of Helsinki and Helsinki University Hospital, Helsinki, Finland. Electronic address:

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http://dx.doi.org/10.1016/j.jaci.2019.02.002DOI Listing
June 2019

Association of tamoxifen resistance and lipid reprogramming in breast cancer.

BMC Cancer 2018 Aug 24;18(1):850. Epub 2018 Aug 24.

Institute for Molecular Medicine Finland, FIMM, Helsinki Institute for Life Sciences (HiLIFE), University of Helsinki, Helsinki, Finland.

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https://bmccancer.biomedcentral.com/articles/10.1186/s12885-
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http://dx.doi.org/10.1186/s12885-018-4757-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6109356PMC
August 2018

The impact of RNA sequence library construction protocols on transcriptomic profiling of leukemia.

BMC Genomics 2017 Aug 17;18(1):629. Epub 2017 Aug 17.

Institute for Molecular Medicine Finland (FIMM), Helsinki Institute of Life Science, University of Helsinki, P.O. Box 20, Tukholmankatu 8, FI-00014, Helsinki, Finland.

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http://dx.doi.org/10.1186/s12864-017-4039-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5561555PMC
August 2017

Functional genomics provides insights into the role of Propionibacterium freudenreichii ssp. shermanii JS in cheese ripening.

Int J Food Microbiol 2017 Jan 26;241:39-48. Epub 2016 Sep 26.

Institute of Biotechnology, University of Helsinki, Viikinkaari 4, PO Box 56, FI-00014 Helsinki, Finland.

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http://dx.doi.org/10.1016/j.ijfoodmicro.2016.09.022DOI Listing
January 2017

Fusarium mycotoxin enniatin B: Cytotoxic effects and changes in gene expression profile.

Toxicol In Vitro 2016 Aug 6;34:309-320. Epub 2016 May 6.

Chemistry and Toxicology Research Unit, Finnish Food Safety Authority (Evira), Mustialankatu 3, FI-00790 Helsinki, Finland; Finnish Safety and Chemicals Agency (Tukes), Opastinsilta 12 B, FI-00521 Helsinki, Finland.

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http://dx.doi.org/10.1016/j.tiv.2016.04.017DOI Listing
August 2016

Loss of Rad51c accelerates tumourigenesis in sebaceous glands of Trp53-mutant mice.

J Pathol 2015 Jan;235(1):136-46

Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Finland.

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http://dx.doi.org/10.1002/path.4455DOI Listing
January 2015

Comparative proteome profiling of bovine and human Staphylococcus epidermidis strains for screening specifically expressed virulence and adaptation proteins.

Proteomics 2014 Aug 10;14(16):1890-4. Epub 2014 Jul 10.

Institute of Biotechnology, Proteomics Unit, University of Helsinki, Helsinki, Finland; Department of Food and Environmental Sciences, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1002/pmic.201300275DOI Listing
August 2014

Comparative exoprotein profiling of different Staphylococcus epidermidis strains reveals potential link between nonclassical protein export and virulence.

J Proteome Res 2014 Jul 2;13(7):3249-61. Epub 2014 Jun 2.

Department of Food and Environmental Sciences, ‡Institute of Biotechnology, and §Department of Veterinary Biosciences, University of Helsinki , FI-00014 Helsinki, Finland.

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http://dx.doi.org/10.1021/pr500075jDOI Listing
July 2014

Systems-level analysis of clinically different phenotypes of juvenile nasopharyngeal angiofibromas.

Laryngoscope 2012 Dec 10;122(12):2728-35. Epub 2012 Sep 10.

Department of Otorhinolaryngology-Head and Neck Surgery, Haartman Institute and HusLab, Helsinki University Central Hospital and University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1002/lary.23592DOI Listing
December 2012

Effect of acid stress on protein expression and phosphorylation in Lactobacillus rhamnosus GG.

J Proteomics 2012 Feb 16;75(4):1357-74. Epub 2011 Nov 16.

Institute of Biotechnology, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1016/j.jprot.2011.11.009DOI Listing
February 2012

BLANNOTATOR: enhanced homology-based function prediction of bacterial proteins.

BMC Bioinformatics 2012 Feb 15;13:33. Epub 2012 Feb 15.

Institute of Biotechnology, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1186/1471-2105-13-33DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3386020PMC
February 2012

Comparative proteome cataloging of Lactobacillus rhamnosus strains GG and Lc705.

J Proteome Res 2011 Aug 17;10(8):3460-73. Epub 2011 Jun 17.

Institute of Biotechnology, University of Helsinki, Finland.

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http://pubs.acs.org/doi/abs/10.1021/pr2000896
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http://dx.doi.org/10.1021/pr2000896DOI Listing
August 2011

Identification of regulatory elements in the AGT1 promoter of ale and lager strains of brewer's yeast.

Yeast 2011 Aug 13;28(8):579-94. Epub 2011 Jul 13.

VTT Technical Research Centre of Finland, PO Box 1000, FI-02044 VTT, Finland.

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http://dx.doi.org/10.1002/yea.1888DOI Listing
August 2011

MPEA--metabolite pathway enrichment analysis.

Bioinformatics 2011 Jul 5;27(13):1878-9. Epub 2011 May 5.

VTT Technical Research Centre of Finland, Espooi, Finland.

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http://dx.doi.org/10.1093/bioinformatics/btr278DOI Listing
July 2011

Adhesive polypeptides of Staphylococcus aureus identified using a novel secretion library technique in Escherichia coli.

BMC Microbiol 2011 May 27;11:117. Epub 2011 May 27.

Division of General Microbiology, Department of Biosciences, University of Helsinki, Viikinkaari 9C, University of Helsinki, Finland.

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http://dx.doi.org/10.1186/1471-2180-11-117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3127751PMC
May 2011

Genome sequence of Lactobacillus crispatus ST1.

J Bacteriol 2010 Jul 30;192(13):3547-8. Epub 2010 Apr 30.

Division of Genetics, Department of Biosciences, P.O. Box 56, FIN-00014 University of Helsinki, Finland.

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http://dx.doi.org/10.1128/JB.00399-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2897677PMC
July 2010

Mucosal adhesion properties of the probiotic Lactobacillus rhamnosus GG SpaCBA and SpaFED pilin subunits.

Appl Environ Microbiol 2010 Apr 29;76(7):2049-57. Epub 2010 Jan 29.

Department of Veterinary Biosciences, Veterinary Microbiology and Epidemiology, P.O. Box 66, FIN-00014 University of Helsinki, Finland.

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http://aem.asm.org/cgi/doi/10.1128/AEM.01958-09
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http://dx.doi.org/10.1128/AEM.01958-09DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2849237PMC
April 2010

LOCP--locating pilus operons in gram-positive bacteria.

Bioinformatics 2009 May 4;25(9):1187-8. Epub 2009 Mar 4.

Institute of Biotechnology, University of Helsinki, P.O.Box 56 (Viikinkaari 5), FIN-00014 University of Helsinki, Finland.

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http://dx.doi.org/10.1093/bioinformatics/btp127DOI Listing
May 2009

Regulation of xylose metabolism in recombinant Saccharomyces cerevisiae.

Microb Cell Fact 2008 Jun 4;7:18. Epub 2008 Jun 4.

VTT, Technical Research Centre of Finland, P,O, Box 1000, FI-02044 VTT, Finland.

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http://dx.doi.org/10.1186/1475-2859-7-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2435516PMC
June 2008

MATLIGN: a motif clustering, comparison and matching tool.

BMC Bioinformatics 2007 Jun 8;8:189. Epub 2007 Jun 8.

Institute of Biotechnology, University of Helsinki, Helsinki, Finland.

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http://dx.doi.org/10.1186/1471-2105-8-189DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1925120PMC
June 2007

POXO: a web-enabled tool series to discover transcription factor binding sites.

Nucleic Acids Res 2006 Jul;34(Web Server issue):W534-40

Institute of Biotechnology, University of Helsinki, PO Box 56 (Viikinkaari 5), FIN-00014 Helsinki, Finland.

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https://nar.oxfordjournals.org/content/34/suppl_2/W534.full-
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http://nar.oxfordjournals.org/lookup/doi/10.1093/nar/gkl296
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http://dx.doi.org/10.1093/nar/gkl296DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538773PMC
July 2006

POCO: discovery of regulatory patterns from promoters of oppositely expressed gene sets.

Nucleic Acids Res 2005 Jul;33(Web Server issue):W427-31

Institute of Biotechnology, University of Helsinki, PO Box 56 (Viikinkaari 5), FIN-00014, Helsinki, Finland.

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http://dx.doi.org/10.1093/nar/gki467DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160228PMC
July 2005

POBO, transcription factor binding site verification with bootstrapping.

Nucleic Acids Res 2004 Jul;32(Web Server issue):W222-9

Structural Genomics Group, Institute of Biotechnology, University of Helsinki, PO Box 56 (Viikinkaari 5), Fin-00014, Helsinki, Finland.

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http://dx.doi.org/10.1093/nar/gkh463DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC441601PMC
July 2004

DANCER: a program for digital anatomical reconstruction of gene expression data.

Nucleic Acids Res 2003 Nov;31(21):e132

Laboratory of Functional Genomics and Bioinformatics, Department of Neurobiology, A.I. Virtanen Institute for Molecular Sciences, University of Kuopio, PO Box 1627, FIN-70211, Kuopio, Finland.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC275489PMC
http://dx.doi.org/10.1093/nar/gng132DOI Listing
November 2003