Publications by authors named "Matthieu Defrance"

33Publications

DNAModAnnot: a R toolbox for DNA modification filtering and annotation.

Authors:
Alexis Hardy Mélody Matelot Amandine Touzeau Christophe Klopp Céline Lopez-Roques Sandra Duharcourt Matthieu Defrance

Bioinformatics 2021 Jan 20. Epub 2021 Jan 20.

Université Libre de Bruxelles, Interuniversity Institute of Bioinformatics in Brussels (IB2), Brussels, 1050, Belgium.

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January 2021

Combining single-cell RNA-sequencing with a molecular atlas unveils new markers for Caenorhabditis elegans neuron classes.

Authors:
Ramiro Lorenzo Michiho Onizuka Matthieu Defrance Patrick Laurent

Nucleic Acids Res 2020 07;48(13):7119-7134

Laboratory of Neurophysiology, ULB Neuroscience Institute (UNI), Université Libre de Bruxelles (ULB), Brussels, Belgium.

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July 2020

Retinal endothelial cell phenotypic modifications during experimental autoimmune uveitis: a transcriptomic approach.

Authors:
Deborah A Lipski Vincent Foucart Rémi Dewispelaere Laure E Caspers Matthieu Defrance Catherine Bruyns François Willermain

BMC Ophthalmol 2020 Mar 17;20(1):106. Epub 2020 Mar 17.

Ophthalmology Group, IRIBHM (Institut de Recherche Interdisciplinaire en Biologie Humaine et Moléculaire), Université Libre de Bruxelles (ULB), Erasme Campus, Building C, Room C6.117, 808 Route de Lennik, 1070, Brussels, Belgium.

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March 2020

EOMES interacts with RUNX3 and BRG1 to promote innate memory cell formation through epigenetic reprogramming.

Authors:
Nicolas Istaces Marion Splittgerber Viviana Lima Silva Muriel Nguyen Séverine Thomas Aurore Le Younes Achouri Emilie Calonne Matthieu Defrance François Fuks Stanislas Goriely Abdulkader Azouz

Nat Commun 2019 07 24;10(1):3306. Epub 2019 Jul 24.

Université Libre de Bruxelles, Institute for Medical Immunology (IMI), Gosselies, 6041, Belgium.

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July 2019

Distinct mesoderm migration phenotypes in extra-embryonic and embryonic regions of the early mouse embryo.

Authors:
Bechara Saykali Navrita Mathiah Wallis Nahaboo Marie-Lucie Racu Latifa Hammou Matthieu Defrance Isabelle Migeotte

Elife 2019 04 5;8. Epub 2019 Apr 5.

IRIBHM, Université Libre de Bruxelles, Brussels, Belgium.

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April 2019

Molecular chaperoning helps safeguarding mitochondrial integrity and motor functions in the Sahara silver ant Cataglyphis bombycina.

Authors:
Quentin Willot Patrick Mardulyn Matthieu Defrance Cyril Gueydan Serge Aron

Sci Rep 2018 06 15;8(1):9220. Epub 2018 Jun 15.

Evolutionary Biology and Ecology, Université Libre de Bruxelles, CP 160/12, Av. F.D. Roosevelt, 50, Brussels, 1050, Belgium.

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June 2018

The transcription factors Runx3 and ThPOK cross-regulate acquisition of cytotoxic function by human Th1 lymphocytes.

Authors:
Yasmina Serroukh Chunyan Gu-Trantien Baharak Hooshiar Kashani Matthieu Defrance Thien-Phong Vu Manh Abdulkader Azouz Aurélie Detavernier Alice Hoyois Jishnu Das Martin Bizet Emeline Pollet Tressy Tabbuso Emilie Calonne Klaas van Gisbergen Marc Dalod François Fuks Stanislas Goriely Arnaud Marchant

Elife 2018 02 28;7. Epub 2018 Feb 28.

Institute for Medical Immunology, Université Libre de Bruxelles, Charleroi, Belgium.

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February 2018

Changes in chromatin state reveal ARNT2 at a node of a tumorigenic transcription factor signature driving glioblastoma cell aggressiveness.

Authors:
Alexandra Bogeas Ghislaine Morvan-Dubois Elias A El-Habr François-Xavier Lejeune Matthieu Defrance Ashwin Narayanan Klaudia Kuranda Fanny Burel-Vandenbos Salwa Sayd Virgile Delaunay Luiz G Dubois Hugues Parrinello Stéphanie Rialle Sylvie Fabrega Ahmed Idbaih Jacques Haiech Ivan Bièche Thierry Virolle Michele Goodhardt Hervé Chneiweiss Marie-Pierre Junier

Acta Neuropathol 2018 02 17;135(2):267-283. Epub 2017 Nov 17.

CNRS UMR8246, Inserm U1130, Neuroscience Paris Seine-IBPS, UPMC, Sorbonne Universités, Paris, France.

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February 2018

MHC class II expression and potential antigen-presenting cells in the retina during experimental autoimmune uveitis.

Authors:
Deborah A Lipski Rémi Dewispelaere Vincent Foucart Laure E Caspers Matthieu Defrance Catherine Bruyns François Willermain

J Neuroinflammation 2017 07 18;14(1):136. Epub 2017 Jul 18.

Ophthalmology Group, IRIBHM (Institut de Recherche Interdisciplinaire en Biologie Humaine et Moléculaire), Université Libre de Bruxelles (ULB), Erasme Campus, Building C, Room C6.117, 808 Route de Lennik, 1070, Brussels, Belgium.

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July 2017

DNA methylation-based immune response signature improves patient diagnosis in multiple cancers.

Authors:
Jana Jeschke Martin Bizet Christine Desmedt Emilie Calonne Sarah Dedeurwaerder Soizic Garaud Alexander Koch Denis Larsimont Roberto Salgado Gert Van den Eynden Karen Willard Gallo Gianluca Bontempi Matthieu Defrance Christos Sotiriou François Fuks

J Clin Invest 2017 Aug 17;127(8):3090-3102. Epub 2017 Jul 17.

Laboratory of Cancer Epigenetics, Faculty of Medicine, ULB-Cancer Research Center (U-CRC), Université Libre de Bruxelles (ULB), Brussels, Belgium.

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August 2017

FOXP1 is a regulator of quiescence in healthy human CD4 T cells and is constitutively repressed in T cells from patients with lymphoproliferative disorders.

Authors:
Soizic Garaud Florence Roufosse Pushpamali De Silva Chunyan Gu-Trantien Jean-Nicolas Lodewyckx Hugues Duvillier Sarah Dedeurwaerder Martin Bizet Matthieu Defrance François Fuks Françoise Bex Karen Willard-Gallo

Eur J Immunol 2017 01 30;47(1):168-179. Epub 2016 Nov 30.

Molecular Immunology Unit, Institut Jules Bordet, Université Libre de Bruxelles, Brussels, Belgium.

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January 2017

Portraying breast cancers with long noncoding RNAs.

Authors:
Olivier Van Grembergen Martin Bizet Eric J de Bony Emilie Calonne Pascale Putmans Sylvain Brohée Catharina Olsen Mingzhou Guo Gianluca Bontempi Christos Sotiriou Matthieu Defrance François Fuks

Sci Adv 2016 09 2;2(9):e1600220. Epub 2016 Sep 2.

Laboratory of Cancer Epigenetics, Faculty of Medicine, ULB-Cancer Research Center (U-CRC), Université Libre de Bruxelles (ULB), 1070 Brussels, Belgium.

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September 2016

The interplay between the lysine demethylase KDM1A and DNA methyltransferases in cancer cells is cell cycle dependent.

Authors:
Carmen Brenner Judith Luciani Martin Bizet Matladi Ndlovu Eleonore Josseaux Sarah Dedeurwaerder Emilie Calonne Pascale Putmans Pierre-Francois Cartron Matthieu Defrance François Fuks Rachel Deplus

Oncotarget 2016 Sep;7(37):58939-58952

Laboratory of Cancer Epigenetics, Faculty of Medicine, ULB-Cancer Research Centre (U-CRC), Université Libre de Bruxelles, 1070 Brussels, Belgium.

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September 2016

RNA biochemistry. Transcriptome-wide distribution and function of RNA hydroxymethylcytosine.

Authors:
Benjamin Delatte Fei Wang Long Vo Ngoc Evelyne Collignon Elise Bonvin Rachel Deplus Emilie Calonne Bouchra Hassabi Pascale Putmans Stephan Awe Collin Wetzel Judith Kreher Romuald Soin Catherine Creppe Patrick A Limbach Cyril Gueydan Véronique Kruys Alexander Brehm Svetlana Minakhina Matthieu Defrance Ruth Steward François Fuks

Science 2016 Jan;351(6270):282-5

Laboratory of Cancer Epigenetics, Faculty of Medicine, ULB Cancer Research Center (U-CRC), Université Libre de Bruxelles (ULB), Brussels, Belgium.

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January 2016

Genome-wide hydroxymethylcytosine pattern changes in response to oxidative stress.

Authors:
Benjamin Delatte Jana Jeschke Matthieu Defrance Martin Bachman Catherine Creppe Emilie Calonne Martin Bizet Rachel Deplus Laura Marroquí Myriam Libin Mirunalini Ravichandran Françoise Mascart Decio L Eizirik Adele Murrell Tomasz P Jurkowski François Fuks

Sci Rep 2015 Aug 4;5:12714. Epub 2015 Aug 4.

Laboratory of Cancer Epigenetics, Faculty of Medicine, ULB, 1070 Brussels, Belgium.

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August 2015

Sox9 Controls Self-Renewal of Oncogene Targeted Cells and Links Tumor Initiation and Invasion.

Authors:
Jean-Christophe Larsimont Khalil Kass Youssef Adriana Sánchez-Danés Vijayakumar Sukumaran Matthieu Defrance Benjamin Delatte Mélanie Liagre Pieter Baatsen Jean-Christophe Marine Saskia Lippens Christopher Guerin Véronique Del Marmol Jean-Marie Vanderwinden Francois Fuks Cédric Blanpain

Cell Stem Cell 2015 Jul 18;17(1):60-73. Epub 2015 Jun 18.

Université Libre de Bruxelles, IRIBHM, Brussels 1070, Belgium; WELBIO, Université Libre de Bruxelles, Brussels 1070, Belgium. Electronic address:

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July 2015

RSAT 2015: Regulatory Sequence Analysis Tools.

Authors:
Alejandra Medina-Rivera Matthieu Defrance Olivier Sand Carl Herrmann Jaime A Castro-Mondragon Jeremy Delerce Sébastien Jaeger Christophe Blanchet Pierre Vincens Christophe Caron Daniel M Staines Bruno Contreras-Moreira Marie Artufel Lucie Charbonnier-Khamvongsa Céline Hernandez Denis Thieffry Morgane Thomas-Chollier Jacques van Helden

Nucleic Acids Res 2015 Jul 22;43(W1):W50-6. Epub 2015 Apr 22.

European Genomic Institute for Diabetes (EGID), F-3508, 59000 Lille, France Laboratoire de Bioinformatique des Génomes et des Réseaux (BiGRe), Université Libre de Bruxelles, Campus Plaine, CP 263, Bld du Triomphe, B-1050 Bruxelles, Belgium

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July 2015

5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer.

Authors:
Santiago Uribe-Lewis Rory Stark Thomas Carroll Mark J Dunning Martin Bachman Yoko Ito Lovorka Stojic Silvia Halim Sarah L Vowler Andy G Lynch Benjamin Delatte Eric J de Bony Laurence Colin Matthieu Defrance Felix Krueger Ana-Luisa Silva Rogier Ten Hoopen Ashraf Ek Ibrahim François Fuks Adele Murrell

Genome Biol 2015 Apr 1;16:69. Epub 2015 Apr 1.

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April 2015

Regulation of DNA methylation patterns by CK2-mediated phosphorylation of Dnmt3a.

Authors:
Rachel Deplus Loïc Blanchon Arumugam Rajavelu Abdelhalim Boukaba Matthieu Defrance Judith Luciani Françoise Rothé Sarah Dedeurwaerder Hélène Denis Arie B Brinkman Femke Simmer Fabian Müller Benjamin Bertin Maria Berdasco Pascale Putmans Emilie Calonne David W Litchfield Yvan de Launoit Tomasz P Jurkowski Hendrik G Stunnenberg Christoph Bock Christos Sotiriou Mario F Fraga Manel Esteller Albert Jeltsch François Fuks

Cell Rep 2014 Aug 24;8(3):743-53. Epub 2014 Jul 24.

Laboratory of Cancer Epigenetics, Faculty of Medicine, Université Libre de Bruxelles, 808 route de Lennik, 1070 Brussels, Belgium. Electronic address:

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August 2014

Dietary flavanols modulate the transcription of genes associated with cardiovascular pathology without changes in their DNA methylation state.

Authors:
Dragan Milenkovic Wim Vanden Berghe Céline Boby Christine Leroux Ken Declerck Katarzyna Szarc vel Szic Karen Heyninck Kris Laukens Martin Bizet Matthieu Defrance Sarah Dedeurwaerder Emilie Calonne Francois Fuks Guy Haegeman Guido R M M Haenen Aalt Bast Antje R Weseler

PLoS One 2014 24;9(4):e95527. Epub 2014 Apr 24.

Department of Toxicology, Maastricht University, MD Maastricht, Netherlands.

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January 2015