Matthias Samwald

Matthias Samwald

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Matthias Samwald

Matthias Samwald

Publications by authors named "Matthias Samwald"

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45Publications

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Deep contextualized embeddings for quantifying the informative content in biomedical text summarization.

Comput Methods Programs Biomed 2020 Feb 4;184:105117. Epub 2019 Oct 4.

Institute for Artificial Intelligence and Decision Support, Center for Medical Statistics, Informatics, and Intelligent Systems, Medical University of Vienna, Vienna, Austria.

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http://dx.doi.org/10.1016/j.cmpb.2019.105117DOI Listing
February 2020

Neural sentence embedding models for semantic similarity estimation in the biomedical domain.

BMC Bioinformatics 2019 Apr 11;20(1):178. Epub 2019 Apr 11.

Section for Artificial Intelligence and Decision Support, Center for Medical Statistics, Informatics, and Intelligent Systems, Medical University of Vienna, Währinger Straße 25a, 1090, Vienna, Austria.

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http://dx.doi.org/10.1186/s12859-019-2789-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6460644PMC
April 2019

Fast and scalable neural embedding models for biomedical sentence classification.

BMC Bioinformatics 2018 Dec 22;19(1):541. Epub 2018 Dec 22.

Section for Artificial Intelligence and Decision Support, Medical University of Vienna, Währinger Strasse 25A, OG1, Vienna, 1090, Austria.

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http://dx.doi.org/10.1186/s12859-018-2496-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6303852PMC
December 2018

Effects of Medical Device Regulations on the Development of Stand-Alone Medical Software: A Pilot Study.

Stud Health Technol Inform 2018 ;248:180-187

Center for Medical Statistics, Informatics, and Intelligent Systems. Medical University of Vienna.

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June 2018

The Importance of Gene-Drug-Drug-Interactions in Pharmacogenomics Decision Support: An Analysis Based on Austrian Claims Data.

Stud Health Technol Inform 2017 ;236:121-127

Center for Medical Statistics, Informatics, and Intelligent Systems. Medical University of Vienna, Austria.

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April 2018

How Many Patients Could Benefit From Pre-emptive Pharmacogenomic Testing and Decision Support? A Retrospective Study Based on Nationwide Austrian Claims Data.

Stud Health Technol Inform 2016 ;223:253-8

Center for Medical Statistics, Informatics, and Intelligent Systems. Medical University of Vienna.

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March 2018

A brighter future for the implementation of pharmacogenomic testing.

Eur J Hum Genet 2016 12 31;24(12):1658-1660. Epub 2016 Aug 31.

Department of Clinical Pharmacy & Toxicology, Leiden University Medical Center, Leiden, The Netherlands.

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http://dx.doi.org/10.1038/ejhg.2016.116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5117920PMC
December 2016

Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.

Nat Commun 2016 10 10;7:13205. Epub 2016 Oct 10.

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http://dx.doi.org/10.1038/ncomms13205DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5062501PMC
October 2016

Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.

Nat Commun 2016 08 23;7:12460. Epub 2016 Aug 23.

Sage Bionetworks, Seattle, Washington 98115, USA.

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http://dx.doi.org/10.1038/ncomms12460DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4996969PMC
August 2016

Analyzing the potential for incorrect haplotype calls with different pharmacogenomic assays in different populations: a simulation based on 1000 Genomes data.

Pharmacogenomics 2015 30;16(15):1713-21. Epub 2015 Sep 30.

Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.

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http://dx.doi.org/10.2217/pgs.15.108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4946345PMC
July 2016

Examining perceptions of the usefulness and usability of a mobile-based system for pharmacogenomics clinical decision support: a mixed methods study.

PeerJ 2016 8;4:e1671. Epub 2016 Feb 8.

Center for Medical Statistics, Informatics, and Intelligent Systems, Medical University of Vienna , Vienna , Austria.

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https://peerj.com/articles/1671.pdf
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https://peerj.com/articles/1671
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http://dx.doi.org/10.7717/peerj.1671DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4768706PMC
February 2016

Towards a global IT system for personalized medicine: the Medicine Safety Code initiative.

Stud Health Technol Inform 2014 ;205:261-5

Section for Medical Expert and Knowledge-Based Systems, Medical University of Vienna, Vienna, Austria.

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May 2015

An open-source, mobile-friendly search engine for public medical knowledge.

Stud Health Technol Inform 2014 ;205:358-62

Information & Software Engineering Group; Institute of Software Technology and Interactive Systems; Vienna University of Technology, Austria.

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May 2015

Exploring the application of deep learning techniques on medical text corpora.

Stud Health Technol Inform 2014 ;205:584-8

Section for Medical Expert and Knowledge-Based Systems, Medical University of Vienna, Vienna, Austria.

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May 2015

Utilizing the Wikidata system to improve the quality of medical content in Wikipedia in diverse languages: a pilot study.

J Med Internet Res 2015 May 5;17(5):e110. Epub 2015 May 5.

Section for Medical Expert and Knowledge-Based Systems, Center for Medical Statistics, Informatics, and Intelligent Systems, Medical University of Vienna, Vienna, Austria.

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http://dx.doi.org/10.2196/jmir.4163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4468594PMC
May 2015

Physicians searching the web for medical question answering: a European survey and local user studies.

Stud Health Technol Inform 2013 ;192:1103

Institute of Software Technology and Interactive Systems, Vienna University of Technology, Vienna, Austria.

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April 2015

Towards a global IT system for personalized medicine: the Medicine Safety Code initiative.

Stud Health Technol Inform 2014 ;198:25-31

Section for Medical Expert and Knowledge-Based Systems, Medical University of Vienna, Vienna, Austria.

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April 2015

Drug-drug interaction data source survey and linking.

AMIA Jt Summits Transl Sci Proc 2014 7;2014:16. Epub 2014 Apr 7.

University of Pittsburgh, Pittsburgh, PA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4333686PMC
February 2015

Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies.

BMC Med Inform Decis Mak 2015 Feb 22;15:12. Epub 2015 Feb 22.

Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA, 94305-5479, USA.

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http://dx.doi.org/10.1186/s12911-015-0130-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4340468PMC
February 2015

An ontology-based, mobile-optimized system for pharmacogenomic decision support at the point-of-care.

PLoS One 2014 2;9(5):e93769. Epub 2014 May 2.

Section for Medical Expert and Knowledge-Based Systems, Center for Medical Statistics, Informatics, and Intelligent Systems, Medical University of Vienna, Vienna, Austria.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093769PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4008421PMC
December 2014

Making data on essential pharmacogenes available for every patient everywhere: the Medicine Safety Code initiative.

Pharmacogenomics 2013 Oct;14(13):1529-31

Section for Medical Expert & Knowledge-Based Systems, Center for Medical Statistics, Informatics & Intelligent Systems, Medical University of Vienna, Spitalgasse 23, A-1090 Vienna, Austria.

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http://dx.doi.org/10.2217/pgs.13.121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4028543PMC
October 2013

Pharmacogenomics in the pocket of every patient? A prototype based on quick response codes.

J Am Med Inform Assoc 2013 May 23;20(3):409-12. Epub 2013 Jan 23.

Section for Medical Expert and Knowledge-Based Systems, Center for Medical Statistics, Informatics, and Intelligent Systems, Medical University of Vienna, Vienna, Austria.

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http://dx.doi.org/10.1136/amiajnl-2012-001275DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3628061PMC
May 2013

A data-driven living review for pharmacogenomic decision support in cancer treatment.

Stud Health Technol Inform 2012 ;180:688-92

Medical University of Vienna, Austria.

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http://www.meduniwien.ac.at/kpa/publications/MIE_2012_--_A_D
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January 2013

The Arden Syntax standard for clinical decision support: experiences and directions.

J Biomed Inform 2012 Aug 10;45(4):711-8. Epub 2012 Feb 10.

Section for Medical Expert and Knowledge-Based Systems, Center for Medical Statistics, Informatics, and Intelligent Systems, Medical University of Vienna, Spitalgasse 23, A-1090 Vienna, Austria.

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http://dx.doi.org/10.1016/j.jbi.2012.02.001DOI Listing
August 2012

Semantically enabling pharmacogenomic data for the realization of personalized medicine.

Pharmacogenomics 2012 Jan;13(2):201-12

Department of Medical Statistics & Bioinformatics, Leiden University Medical Center/Informatics Institute, University of Amsterdam, Einthovenweg 20, 2333 ZC Leiden, The Netherlands.

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http://dx.doi.org/10.2217/pgs.11.179DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3957334PMC
January 2012

Towards an interoperable information infrastructure providing decision support for genomic medicine.

Stud Health Technol Inform 2011 ;169:165-9

Section for Medical Expert and Knowledge-Based Systems, Center for Medical Statistics, Informatics, and Intelligent Systems, Medical University of Vienna.

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December 2011

Linked open drug data for pharmaceutical research and development.

J Cheminform 2011 May 16;3(1):19. Epub 2011 May 16.

Section for Medical Expert and Knowledge-Based Systems, Center for Medical Statistics, Informatics, and Intelligent Systems, Medical University of Vienna, Vienna, Austria.

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http://dx.doi.org/10.1186/1758-2946-3-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3121711PMC
May 2011

Integrating findings of traditional medicine with modern pharmaceutical research: the potential role of linked open data.

Chin Med 2010 Dec 17;5:43. Epub 2010 Dec 17.

Digital Enterprise Research Institute, National University of Ireland Galway, IDA Business Park, Lower Dangan, Galway, Ireland.

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http://cmjournal.biomedcentral.com/articles/10.1186/1749-854
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http://dx.doi.org/10.1186/1749-8546-5-43DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3017053PMC
December 2010

The BioPAX community standard for pathway data sharing.

Nat Biotechnol 2010 Sep 9;28(9):935-42. Epub 2010 Sep 9.

Computational Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.

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http://dx.doi.org/10.1038/nbt.1666DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001121PMC
September 2010

Structured digital tables on the Semantic Web: toward a structured digital literature.

Mol Syst Biol 2010 Aug;6:403

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA.

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http://dx.doi.org/10.1038/msb.2010.45DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2950080PMC
August 2010

Establishing a distributed system for the simple representation and integration of diverse scientific assertions.

J Biomed Semantics 2010 Jun 22;1 Suppl 1:S5. Epub 2010 Jun 22.

Digital Enterprise Research Institute (DERI), Galway, Ireland.

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http://dx.doi.org/10.1186/2041-1480-1-S1-S5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2903724PMC
June 2010

Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience.

Artif Intell Med 2010 Jan 16;48(1):21-8. Epub 2009 Dec 16.

Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06520-8009, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S093336570900162
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http://dx.doi.org/10.1016/j.artmed.2009.11.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3131218PMC
January 2010

Entrez Neuron RDFa: a pragmatic semantic web application for data integration in neuroscience research.

Stud Health Technol Inform 2009 ;150:317-21

Digital Enterprise Research Institute, National University of Ireland Galway, IDA Business Park, Lower Dangan, Galway, Ireland.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3753668PMC
December 2009

A journey to Semantic Web query federation in the life sciences.

BMC Bioinformatics 2009 Oct 1;10 Suppl 10:S10. Epub 2009 Oct 1.

Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06511, USA.

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http://dx.doi.org/10.1186/1471-2105-10-S10-S10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2755818PMC
October 2009

Approaches to neuroscience data integration.

Brief Bioinform 2009 Jul;10(4):345-53

Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06511, USA.

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http://dx.doi.org/10.1093/bib/bbp029DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2691938PMC
July 2009

Life sciences on the Semantic Web: the Neurocommons and beyond.

Brief Bioinform 2009 Mar 12;10(2):193-204. Epub 2009 Mar 12.

Informatics Institute, University of Amsterdam, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1093/bib/bbp004DOI Listing
March 2009