Publications by authors named "Matthias Mann"

100Publications

Plasma proteome profiles treatment efficacy of incretin dual agonism in diet-induced obese female and male mice.

Diabetes Obes Metab 2020 Oct 1. Epub 2020 Oct 1.

Institute for Diabetes and Regeneration, Helmholtz Diabetes Center at Helmholtz Centre Munich, German Research Center for Environmental Health (GmbH), Neuherberg, Germany.

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http://dx.doi.org/10.1111/dom.14215DOI Listing
October 2020

Pharmacological and phosphoproteomic approaches to roles of protein kinase C in kappa opioid receptor-mediated effects in mice.

Neuropharmacology 2020 Dec 22;181:108324. Epub 2020 Sep 22.

Center for Substance Abuse Research & Department of Pharmacology, Temple University Lewis Katz School of Medicine, Philadelphia, PA, 19140, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuropharm.2020.108324DOI Listing
December 2020

Cell-Type- and Brain-Region-Resolved Mouse Brain Lipidome.

Cell Rep 2020 Sep;32(11):108132

Max Planck Institute of Experimental Medicine, 37075 Göttingen, Germany; Institute of Neuronal Cell Biology, Technical University Munich, 80802 Munich, Germany; German Center for Neurodegenerative Diseases (DZNE), 81377 Munich, Germany; Munich Cluster of Systems Neurology (SyNergy), 81377 Munich, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2020.108132DOI Listing
September 2020

A Cell-Autonomous Signature of Dysregulated Protein Phosphorylation Underlies Muscle Insulin Resistance in Type 2 Diabetes.

Cell Metab 2020 Nov 3;32(5):844-859.e5. Epub 2020 Sep 3.

Section of Integrative Physiology and Metabolism, Joslin Diabetes Center, Harvard Medical School, Boston, MA 02215, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cmet.2020.08.007DOI Listing
November 2020

FAM111 protease activity undermines cellular fitness and is amplified by gain-of-function mutations in human disease.

EMBO Rep 2020 Aug 9:e50662. Epub 2020 Aug 9.

Protein Signaling Program, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.15252/embr.202050662DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7534640PMC
August 2020

The Origins of Organellar Mapping by Protein Correlation Profiling.

Authors:
Matthias Mann

Proteomics 2020 Aug 3:e1900330. Epub 2020 Aug 3.

Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, 82152, Martinsried, Germany.

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http://dx.doi.org/10.1002/pmic.201900330DOI Listing
August 2020

Integrative Analysis Identifies Key Molecular Signatures Underlying Neurodevelopmental Deficits in Fragile X Syndrome.

Biol Psychiatry 2020 Sep 13;88(6):500-511. Epub 2020 May 13.

Translational Laboratory in Genetic Medicine, Agency for Science, Technology and Research, Singapore (A∗STAR), Singapore; Department of Physiology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Medicine, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. Electronic address:

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http://dx.doi.org/10.1016/j.biopsych.2020.05.005DOI Listing
September 2020

Accurate MS-based Rab10 Phosphorylation Stoichiometry Determination as Readout for LRRK2 Activity in Parkinson's Disease.

Mol Cell Proteomics 2020 09 29;19(9):1546-1560. Epub 2020 Jun 29.

Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany

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http://dx.doi.org/10.1074/mcp.RA120.002055DOI Listing
September 2020

The proteome landscape of the kingdoms of life.

Nature 2020 06 17;582(7813):592-596. Epub 2020 Jun 17.

Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.

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http://dx.doi.org/10.1038/s41586-020-2402-xDOI Listing
June 2020

Atomic-resolution mapping of transcription factor-DNA interactions by femtosecond laser crosslinking and mass spectrometry.

Nat Commun 2020 06 15;11(1):3019. Epub 2020 Jun 15.

Department of Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Am Klopferspitz 18, 82152, Martinsried, Germany.

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http://dx.doi.org/10.1038/s41467-020-16837-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7295792PMC
June 2020

Sequencing of the First Draft of the Human Acetylome.

Clin Chem 2020 Jun;66(6):852-853

Proteomics Program, the Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1093/clinchem/hvaa087DOI Listing
June 2020

A streamlined mass spectrometry-based proteomics workflow for large-scale FFPE tissue analysis.

J Pathol 2020 05;251(1):100-112

Clinical Proteomics Group, The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1002/path.5420DOI Listing
May 2020

Role for ribosome-associated quality control in sampling proteins for MHC class I-mediated antigen presentation.

Proc Natl Acad Sci U S A 2020 02 11;117(8):4099-4108. Epub 2020 Feb 11.

Department of Cellular Biochemistry, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany;

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http://dx.doi.org/10.1073/pnas.1914401117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7049129PMC
February 2020

Quantitative and Dynamic Catalogs of Proteins Released during Apoptotic and Necroptotic Cell Death.

Cell Rep 2020 01;30(4):1260-1270.e5

Experimental Systems Immunology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.12.079DOI Listing
January 2020

Quick and clean: Cracking sentences encoded in by LC-MS/MS, de novo sequencing, and dictionary search.

EuPA Open Proteom 2019 Mar 29;22-23:30-35. Epub 2019 Jul 29.

Novo Nordisk Foundation Center for Protein Research, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.1016/j.euprot.2019.07.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6924291PMC
March 2019

Proteomics of Cytochrome c Oxidase-Negative versus -Positive Muscle Fiber Sections in Mitochondrial Myopathy.

Cell Rep 2019 Dec;29(12):3825-3834.e4

Friedrich Baur Institute, Department of Neurology, University of Munich, 80336 Munich, Germany; German Center for Neurodegenerative Diseases (DZNE), Munich, Germany; Munich Cluster for Systems Neurology (SyNergy), Munich, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2019.11.055DOI Listing
December 2019

SHP1 regulates a STAT6-ITGB3 axis in FLT3ITD-positive AML cells.

Leukemia 2020 05 13;34(5):1444-1449. Epub 2019 Dec 13.

Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.

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http://dx.doi.org/10.1038/s41375-019-0676-5DOI Listing
May 2020

Proteomics-Based Comparative Mapping of the Secretomes of Human Brown and White Adipocytes Reveals EPDR1 as a Novel Batokine.

Cell Metab 2019 11 24;30(5):963-975.e7. Epub 2019 Oct 24.

Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen 2200, Denmark; The Centre of Inflammation and Metabolism and the Centre for Physical Activity Research, Rigshospitalet, University of Copenhagen, Copenhagen 2100, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.cmet.2019.10.001DOI Listing
November 2019

Response to Raaijmakers & Medema.

EMBO J 2019 11 22;38(22):e103547. Epub 2019 Oct 22.

Faculty of Health and Medical Sciences, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, Copenhagen, Denmark.

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http://dx.doi.org/10.15252/embj.2019103547DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6856610PMC
November 2019

SILAC-based quantitative proteomics using mass spectrometry quantifies endoplasmic reticulum stress in whole HeLa cells.

Dis Model Mech 2019 11 11;12(11). Epub 2019 Nov 11.

Department of Proteomics and Signal Transduction, Max-Planck-Institute of Biochemistry, 82152 Martinsried, Germany

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http://dx.doi.org/10.1242/dmm.040741DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6899043PMC
November 2019

Sleep-wake cycles drive daily dynamics of synaptic phosphorylation.

Science 2019 10;366(6462)

Institute of Medical Psychology, Faculty of Medicine, LMU Munich, Germany.

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http://dx.doi.org/10.1126/science.aav3617DOI Listing
October 2019

Plasma Proteome Profiling to detect and avoid sample-related biases in biomarker studies.

EMBO Mol Med 2019 11 30;11(11):e10427. Epub 2019 Sep 30.

Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.

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http://dx.doi.org/10.15252/emmm.201910427DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6835559PMC
November 2019

The ever expanding scope of electrospray mass spectrometry-a 30 year journey.

Authors:
Matthias Mann

Nat Commun 2019 09 9;10(1):3744. Epub 2019 Sep 9.

Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.

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http://dx.doi.org/10.1038/s41467-019-11747-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6733869PMC
September 2019

Catching Lipid Droplet Contacts by Proteomics.

Contact (Thousand Oaks) 2019 Jan 4;2:2515256419859186. Epub 2019 Jul 4.

Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.

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http://dx.doi.org/10.1177/2515256419859186DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6660307PMC
January 2019

Myosin binding protein H-like (MYBPHL): a promising biomarker to predict atrial damage.

Sci Rep 2019 07 10;9(1):9986. Epub 2019 Jul 10.

Department of Cardiovascular Surgery, Division of Experimental Surgery, Institute Insure (Institute for Translational Cardiac Surgery), German Heart Center Munich at the Technical University of Munich, Munich, Germany.

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http://dx.doi.org/10.1038/s41598-019-46123-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6620353PMC
July 2019

Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency.

Cell Syst 2019 05 8;8(5):427-445.e10. Epub 2019 May 8.

Epigenetics & Stem Cell Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC 27709, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S24054712193011
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http://dx.doi.org/10.1016/j.cels.2019.03.012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6544180PMC
May 2019

Phosphoproteomics Reveals the GSK3-PDX1 Axis as a Key Pathogenic Signaling Node in Diabetic Islets.

Cell Metab 2019 06 14;29(6):1422-1432.e3. Epub 2019 Mar 14.

Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, 82152 Martinsried, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.cmet.2019.02.012DOI Listing
June 2019

The Case for Proteomics and Phospho-Proteomics in Personalized Cancer Medicine.

Proteomics Clin Appl 2019 03;13(2):e1800113

Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, 82152, Martinsried, Germany.

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http://dx.doi.org/10.1002/prca.201800113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6519247PMC
March 2019

Efficient mitotic checkpoint signaling depends on integrated activities of Bub1 and the RZZ complex.

EMBO J 2019 04 19;38(7). Epub 2019 Feb 19.

Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark

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https://onlinelibrary.wiley.com/doi/abs/10.15252/embj.201810
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http://dx.doi.org/10.15252/embj.2018100977DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6443202PMC
April 2019

MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides.

Mol Cell Proteomics 2019 05 12;18(5):982-994. Epub 2019 Feb 12.

§Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany;

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http://dx.doi.org/10.1074/mcp.TIR118.001131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6495250PMC
May 2019

The CMG Helicase Bypasses DNA-Protein Cross-Links to Facilitate Their Repair.

Cell 2019 01 27;176(1-2):167-181.e21. Epub 2018 Dec 27.

Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA; Howard Hughes Medical Institute, Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2018.10.053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6475077PMC
January 2019

Replication-Coupled DNA-Protein Crosslink Repair by SPRTN and the Proteasome in Xenopus Egg Extracts.

Mol Cell 2019 02 27;73(3):574-588.e7. Epub 2018 Dec 27.

Faculty of Health and Medical Sciences, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, DK-2200 Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.molcel.2018.11.024DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6375733PMC
February 2019

Plasma Proteome Profiling Reveals Dynamics of Inflammatory and Lipid Homeostasis Markers after Roux-En-Y Gastric Bypass Surgery.

Cell Syst 2018 12 5;7(6):601-612.e3. Epub 2018 Dec 5.

Faculty of Health and Medical Sciences, NNF Center for Protein Research, University of Copenhagen, Copenhagen, Denmark; Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.cels.2018.10.012DOI Listing
December 2018

Online Parallel Accumulation-Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer.

Mol Cell Proteomics 2018 12 1;17(12):2534-2545. Epub 2018 Nov 1.

From the ‡Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany;

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http://dx.doi.org/10.1074/mcp.TIR118.000900DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6283298PMC
December 2018

Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis.

Dev Cell 2018 10;47(2):205-221.e7

Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Martinsried 82152, Germany; Faculty of Health Sciences, NNF Center for Protein Research, University of Copenhagen, Copenhagen 2200, Denmark. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15345807183077
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http://dx.doi.org/10.1016/j.devcel.2018.09.017DOI Listing
October 2018

High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform.

Nat Protoc 2018 09;13(9):1897-1916

Max Planck Institute of Biochemistry, Martinsried, Germany.

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http://www.nature.com/articles/s41596-018-0014-9
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http://dx.doi.org/10.1038/s41596-018-0014-9DOI Listing
September 2018

The hemicellulose-degrading enzyme system of the thermophilic bacterium : comparative characterisation and addition of new hemicellulolytic glycoside hydrolases.

Biotechnol Biofuels 2018 23;11:229. Epub 2018 Aug 23.

1Department of Microbiology, TUM School of Life Sciences Weihenstephan, Technical University of Munich, Emil-Ramann-Str. 4, 85354 Freising, Germany.

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http://dx.doi.org/10.1186/s13068-018-1228-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6106730PMC
August 2018

Proteomics for blood biomarker exploration of severe mental illness: pitfalls of the past and potential for the future.

Transl Psychiatry 2018 08 16;8(1):160. Epub 2018 Aug 16.

Institute of Psychiatric Phenomics and Genomics (IPPG), University Hospital Munich, LMU, 80336, Munich, Germany.

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http://dx.doi.org/10.1038/s41398-018-0219-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6095863PMC
August 2018

Phosphoproteomic approach for agonist-specific signaling in mouse brains: mTOR pathway is involved in κ opioid aversion.

Neuropsychopharmacology 2019 04 20;44(5):939-949. Epub 2018 Jul 20.

Center for Substance Abuse Research & Department of Pharmacology, Temple University Lewis Katz School of Medicine, Philadelphia, PA, 19140, USA.

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http://dx.doi.org/10.1038/s41386-018-0155-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6462019PMC
April 2019

In-depth proteomic analyses of (greenlip abalone) nacre and prismatic organic shell matrix.

Proteome Sci 2018 15;16:11. Epub 2018 Jun 15.

2Department of Geobiology, Georg-August University of Göttingen, Goldschmidstr. 3, 37077 Göttingen, Germany.

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http://dx.doi.org/10.1186/s12953-018-0139-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6003135PMC
June 2018

The Transcription Factor ETV1 Induces Atrial Remodeling and Arrhythmia.

Circ Res 2018 08;123(5):550-563

From the Institute of Experimental and Clinical Pharmacology and Toxicology, Faculty of Medicine (C.R., S.R., A.L., M.B., M.S., R.G., T.B., T.S., S.M., L.H.).

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http://dx.doi.org/10.1161/CIRCRESAHA.118.313036DOI Listing
August 2018

EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification.

Nat Methods 2018 07 18;15(7):527-530. Epub 2018 Jun 18.

Experimental Systems Immunology, Max Planck Institute of Biochemistry, Martinsried, Germany.

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http://dx.doi.org/10.1038/s41592-018-0037-8DOI Listing
July 2018

BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes.

Nat Methods 2018 06 7;15(6):440-448. Epub 2018 May 7.

Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany.

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http://www.nature.com/articles/s41592-018-0003-5
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http://dx.doi.org/10.1038/s41592-018-0003-5DOI Listing
June 2018

Spatiotemporal Proteomic Profiling of Huntington's Disease Inclusions Reveals Widespread Loss of Protein Function.

Cell Rep 2017 Nov;21(8):2291-2303

Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.10.097DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5714591PMC
November 2017

Region and cell-type resolved quantitative proteomic map of the human heart.

Nat Commun 2017 11 13;8(1):1469. Epub 2017 Nov 13.

Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, 82152, Germany.

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http://dx.doi.org/10.1038/s41467-017-01747-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5684139PMC
November 2017

A Primer on Concepts and Applications of Proteomics in Neuroscience.

Neuron 2017 Nov;96(3):558-571

Max-Planck-Institute of Biochemistry, Department of Proteomics and Signal Transduction, 82152 Martinsried, Germany; The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark. Electronic address:

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http://dx.doi.org/10.1016/j.neuron.2017.09.025DOI Listing
November 2017

Revisiting biomarker discovery by plasma proteomics.

Mol Syst Biol 2017 09 26;13(9):942. Epub 2017 Sep 26.

Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5615924PMC
http://dx.doi.org/10.15252/msb.20156297DOI Listing
September 2017

Dimethyl-Labeling-Based Quantification of the Lysine Acetylome and Proteome of Plants.

Methods Mol Biol 2017 ;1653:65-81

Plant Proteomics, Max-Planck Institute for Plant Breeding Research, Carl-von-Linné Weg 10, 50829, Köln, Germany.

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http://dx.doi.org/10.1007/978-1-4939-7225-8_5DOI Listing
April 2018

Why is it so difficult to measure glucagon-like peptide-1 in a mouse?

Diabetologia 2017 10 1;60(10):2066-2075. Epub 2017 Jul 1.

Department of Biomedical Sciences, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200, Copenhagen, Denmark.

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http://dx.doi.org/10.1007/s00125-017-4347-7DOI Listing
October 2017

Single Muscle Fiber Proteomics Reveals Fiber-Type-Specific Features of Human Muscle Aging.

Cell Rep 2017 06;19(11):2396-2409

Max-Planck-Institute of Biochemistry, Martinsried 82152, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2017.05.054DOI Listing
June 2017

Social network architecture of human immune cells unveiled by quantitative proteomics.

Nat Immunol 2017 05 6;18(5):583-593. Epub 2017 Mar 6.

Experimental Systems Immunology, Max Planck Institute of Biochemistry, Bayern, Germany.

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http://dx.doi.org/10.1038/ni.3693DOI Listing
May 2017