Publications by authors named "Matthias Harbers"

26Publications

Erratum to: NanoCAGE: A Method for the Analysis of Coding and Noncoding 5'-Capped Transcriptomes.

Methods Mol Biol 2017 ;1543:E1

Division of Genomic Technologies, RIKEN Center for Life Science Technologies, 1-7-22, Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.

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http://dx.doi.org/10.1007/978-1-4939-6716-2_17DOI Listing
January 2017

NanoCAGE: A Method for the Analysis of Coding and Noncoding 5'-Capped Transcriptomes.

Methods Mol Biol 2017 ;1543:57-109

Division of Genomic Technologies, RIKEN Center for Life Science Technologies, 1-7-22, Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.

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http://dx.doi.org/10.1007/978-1-4939-6716-2_4DOI Listing
February 2018

Edesign: Primer and Enhanced Internal Probe Design Tool for Quantitative PCR Experiments and Genotyping Assays.

PLoS One 2016 10;11(2):e0146950. Epub 2016 Feb 10.

RIKEN Center for Life Science Technologies, Division of Genomic Technologies, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0146950PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4749234PMC
July 2016

Insights into the Transcriptional Architecture of Behavioral Plasticity in the Honey Bee Apis mellifera.

Sci Rep 2015 Jun 15;5:11136. Epub 2015 Jun 15.

Computational Bioscience Research Center, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia.

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http://dx.doi.org/10.1038/srep11136DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4466890PMC
June 2015

Shift-Western Blotting: Separate Analysis of Protein and DNA from Protein-DNA Complexes.

Authors:
Matthias Harbers

Methods Mol Biol 2015 ;1312:355-73

Division of Genomic Technologies, RIKEN Center for Life Science Technologies, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan,

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http://dx.doi.org/10.1007/978-1-4939-2694-7_36DOI Listing
February 2016

Wheat germ systems for cell-free protein expression.

Authors:
Matthias Harbers

FEBS Lett 2014 Aug 12;588(17):2762-73. Epub 2014 Jun 12.

RIKEN Center for Life Science Technologies, Suehiro-cho, Tsurumi-ku, Yokohama City, Kanagawa 230-0045, Japan; CellFree Sciences Co., Ltd., 75-1, Ono-cho, Leading Venture Plaza 201, Tsurumi-ku, Yokohama, Kanagawa 230-0046, Japan. Electronic address:

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http://doi.wiley.com/10.1016/j.febslet.2014.05.061
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http://dx.doi.org/10.1016/j.febslet.2014.05.061DOI Listing
August 2014

A promoter-level mammalian expression atlas.

Authors:
Alistair R R Forrest Hideya Kawaji Michael Rehli J Kenneth Baillie Michiel J L de Hoon Vanja Haberle Timo Lassmann Ivan V Kulakovskiy Marina Lizio Masayoshi Itoh Robin Andersson Christopher J Mungall Terrence F Meehan Sebastian Schmeier Nicolas Bertin Mette Jørgensen Emmanuel Dimont Erik Arner Christian Schmidl Ulf Schaefer Yulia A Medvedeva Charles Plessy Morana Vitezic Jessica Severin Colin A Semple Yuri Ishizu Robert S Young Margherita Francescatto Intikhab Alam Davide Albanese Gabriel M Altschuler Takahiro Arakawa John A C Archer Peter Arner Magda Babina Sarah Rennie Piotr J Balwierz Anthony G Beckhouse Swati Pradhan-Bhatt Judith A Blake Antje Blumenthal Beatrice Bodega Alessandro Bonetti James Briggs Frank Brombacher A Maxwell Burroughs Andrea Califano Carlo V Cannistraci Daniel Carbajo Yun Chen Marco Chierici Yari Ciani Hans C Clevers Emiliano Dalla Carrie A Davis Michael Detmar Alexander D Diehl Taeko Dohi Finn Drabløs Albert S B Edge Matthias Edinger Karl Ekwall Mitsuhiro Endoh Hideki Enomoto Michela Fagiolini Lynsey Fairbairn Hai Fang Mary C Farach-Carson Geoffrey J Faulkner Alexander V Favorov Malcolm E Fisher Martin C Frith Rie Fujita Shiro Fukuda Cesare Furlanello Masaaki Furino Jun-ichi Furusawa Teunis B Geijtenbeek Andrew P Gibson Thomas Gingeras Daniel Goldowitz Julian Gough Sven Guhl Reto Guler Stefano Gustincich Thomas J Ha Masahide Hamaguchi Mitsuko Hara Matthias Harbers Jayson Harshbarger Akira Hasegawa Yuki Hasegawa Takehiro Hashimoto Meenhard Herlyn Kelly J Hitchens Shannan J Ho Sui Oliver M Hofmann Ilka Hoof Furni Hori Lukasz Huminiecki Kei Iida Tomokatsu Ikawa Boris R Jankovic Hui Jia Anagha Joshi Giuseppe Jurman Bogumil Kaczkowski Chieko Kai Kaoru Kaida Ai Kaiho Kazuhiro Kajiyama Mutsumi Kanamori-Katayama Artem S Kasianov Takeya Kasukawa Shintaro Katayama Sachi Kato Shuji Kawaguchi Hiroshi Kawamoto Yuki I Kawamura Tsugumi Kawashima Judith S Kempfle Tony J Kenna Juha Kere Levon M Khachigian Toshio Kitamura S Peter Klinken Alan J Knox Miki Kojima Soichi Kojima Naoto Kondo Haruhiko Koseki Shigeo Koyasu Sarah Krampitz Atsutaka Kubosaki Andrew T Kwon Jeroen F J Laros Weonju Lee Andreas Lennartsson Kang Li Berit Lilje Leonard Lipovich Alan Mackay-Sim Ri-ichiroh Manabe Jessica C Mar Benoit Marchand Anthony Mathelier Niklas Mejhert Alison Meynert Yosuke Mizuno David A de Lima Morais Hiromasa Morikawa Mitsuru Morimoto Kazuyo Moro Efthymios Motakis Hozumi Motohashi Christine L Mummery Mitsuyoshi Murata Sayaka Nagao-Sato Yutaka Nakachi Fumio Nakahara Toshiyuki Nakamura Yukio Nakamura Kenichi Nakazato Erik van Nimwegen Noriko Ninomiya Hiromi Nishiyori Shohei Noma Shohei Noma Tadasuke Noazaki Soichi Ogishima Naganari Ohkura Hiroko Ohimiya Hiroshi Ohno Mitsuhiro Ohshima Mariko Okada-Hatakeyama Yasushi Okazaki Valerio Orlando Dmitry A Ovchinnikov Arnab Pain Robert Passier Margaret Patrikakis Helena Persson Silvano Piazza James G D Prendergast Owen J L Rackham Jordan A Ramilowski Mamoon Rashid Timothy Ravasi Patrizia Rizzu Marco Roncador Sugata Roy Morten B Rye Eri Saijyo Antti Sajantila Akiko Saka Shimon Sakaguchi Mizuho Sakai Hiroki Sato Suzana Savvi Alka Saxena Claudio Schneider Erik A Schultes Gundula G Schulze-Tanzil Anita Schwegmann Thierry Sengstag Guojun Sheng Hisashi Shimoji Yishai Shimoni Jay W Shin Christophe Simon Daisuke Sugiyama Takaai Sugiyama Masanori Suzuki Naoko Suzuki Rolf K Swoboda Peter A C 't Hoen Michihira Tagami Naoko Takahashi Jun Takai Hiroshi Tanaka Hideki Tatsukawa Zuotian Tatum Mark Thompson Hiroo Toyodo Tetsuro Toyoda Elvind Valen Marc van de Wetering Linda M van den Berg Roberto Verado Dipti Vijayan Ilya E Vorontsov Wyeth W Wasserman Shoko Watanabe Christine A Wells Louise N Winteringham Ernst Wolvetang Emily J Wood Yoko Yamaguchi Masayuki Yamamoto Misako Yoneda Yohei Yonekura Shigehiro Yoshida Susan E Zabierowski Peter G Zhang Xiaobei Zhao Silvia Zucchelli Kim M Summers Harukazu Suzuki Carsten O Daub Jun Kawai Peter Heutink Winston Hide Tom C Freeman Boris Lenhard Vladimir B Bajic Martin S Taylor Vsevolod J Makeev Albin Sandelin David A Hume Piero Carninci Yoshihide Hayashizaki

Nature 2014 Mar;507(7493):462-70

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http://dx.doi.org/10.1038/nature13182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4529748PMC
March 2014

Effects of cytosine methylation on transcription factor binding sites.

BMC Genomics 2014 Mar 26;15:119. Epub 2014 Mar 26.

Computational Bioscience Research Center, Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia.

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http://dx.doi.org/10.1186/1471-2164-15-119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3986887PMC
March 2014

Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation.

BMC Genomics 2013 Sep 30;14:665. Epub 2013 Sep 30.

RIKEN Center for Life Science Technologies, Division of Genomics Technologies, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1186/1471-2164-14-665DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3853366PMC
September 2013

Effect of thiazole orange doubly labeled thymidine on DNA duplex formation.

Biochemistry 2012 Aug 25;51(31):6056-67. Epub 2012 Jul 25.

RIKEN Omics Science Center (OSC), RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1021/bi300293dDOI Listing
August 2012

DNA amplification techniques in pharmacogenomics.

Pharmacogenomics 2011 Jun;12(6):845-60

Omics Science Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan.

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https://www.futuremedicine.com/doi/10.2217/pgs.11.10
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http://dx.doi.org/10.2217/pgs.11.10DOI Listing
June 2011

The current status of cDNA cloning.

Authors:
Matthias Harbers

Genomics 2008 Mar 28;91(3):232-42. Epub 2008 Jan 28.

DNAFORM, Inc., Leading Venture Plaza 2, 75-1 Ono-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0046, Japan.

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http://dx.doi.org/10.1016/j.ygeno.2007.11.004DOI Listing
March 2008

CAGE: cap analysis of gene expression.

Nat Methods 2006 Mar;3(3):211-22

Laboratory for Genome Exploration Research Group, RIKEN Genomic Sciences Center (GSC), Yokohama Institute 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.

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http://www.nature.com/doifinder/10.1038/nmeth0306-211
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http://dx.doi.org/10.1038/nmeth0306-211DOI Listing
March 2006

Tag-based approaches for transcriptome research and genome annotation.

Nat Methods 2005 Jul;2(7):495-502

K.K. Dnaform, Tsukuba Branch, 3-1 Chuo 8-chome, Ami Machi, Inashiki Gun, Ibaraki, 300-0332, Japan.

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http://dx.doi.org/10.1038/nmeth768DOI Listing
July 2005

Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas.

Nat Methods 2004 Dec 18;1(3):233-9. Epub 2004 Nov 18.

Genome Science Laboratory, RIKEN, Wako main campus, 2-1 Hirosawa, Wako, Saitama, 351-0198 Japan.

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http://dx.doi.org/10.1038/nmeth719DOI Listing
December 2004

Aptamer-dependent full-length cDNA synthesis by overlap extension PCR.

Biotechniques 2004 Jul;37(1):124, 126, 128-9

RIKEN Yokohama Institute, Yokohama, Japan.

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http://dx.doi.org/10.2144/04371DD02DOI Listing
July 2004

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.

Proc Natl Acad Sci U S A 2003 Dec 8;100(26):15776-81. Epub 2003 Dec 8.

Laboratory for Genome Exploration Research Group, RIKEN Genomic Sciences Center, Yokohama Institute 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan.

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http://dx.doi.org/10.1073/pnas.2136655100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC307644PMC
December 2003

The bromodomain mediates transcriptional intermediary factor 1alpha -nucleosome interactions.

J Biol Chem 2002 Dec 15;277(52):50318-25. Epub 2002 Oct 15.

Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM/Université Louis Pasteur, BP 163, F-67404 Illkirch cedex, France.

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http://dx.doi.org/10.1074/jbc.M203759200DOI Listing
December 2002