Publications by authors named "Matthew Stephens"

131Publications

Ultra-purification of Lipopolysaccharides reveals species-specific signalling bias of TLR4: importance in macrophage function.

Sci Rep 2021 Jan 14;11(1):1335. Epub 2021 Jan 14.

Department of Physiology and Pharmacology, Inflammation Research Network, Snyder Institute for Chronic Diseases, Cumming School of Medicine, University of Calgary, Alberta, Canada.

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January 2021

Disinfection of from N95 respirators with ozone: a pilot study.

BMJ Open Respir Res 2021 Jan;8(1)

Section of Pulmonary and Critical Care Medicine, Department of Internal Medicine, Yale University School of Medicine, New Haven, Connecticut, USA

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January 2021

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis.

Genome Res 2020 04 20;30(4):611-621. Epub 2020 Apr 20.

Department of Human Genetics, University of Chicago, Chicago, Illinois 60637, USA.

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April 2020

Creating and sharing reproducible research code the workflowr way.

F1000Res 2019 14;8:1749. Epub 2019 Oct 14.

Department of Human Genetics, University of Chicago, Chicago, IL, 60637, USA.

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June 2020

Bayesian multivariate reanalysis of large genetic studies identifies many new associations.

PLoS Genet 2019 10 9;15(10):e1008431. Epub 2019 Oct 9.

Department of Human Genetics, The University of Chicago, Chicago, Illinois, United States of America.

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October 2019

Detailed modeling of positive selection improves detection of cancer driver genes.

Nat Commun 2019 07 30;10(1):3399. Epub 2019 Jul 30.

Department of Human Genetics, University of Chicago, Chicago, IL, 60637, USA.

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July 2019

Lipopolysaccharides modulate intestinal epithelial permeability and inflammation in a species-specific manner.

Gut Microbes 2020 05 16;11(3):421-432. Epub 2019 Jun 16.

Snyder Institute for Chronic Diseases, Department of Physiology & Pharmacology, Cumming School of Medicine, University of Calgary , Calgary, Canada.

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May 2020

Regional influences on community structure across the tropical-temperate divide.

Nat Commun 2019 06 14;10(1):2646. Epub 2019 Jun 14.

Department of Ecology and Evolution, University of Chicago, 1101 E 57th Street, Chicago, IL, 60637, USA.

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June 2019

Discovery and characterization of variance QTLs in human induced pluripotent stem cells.

PLoS Genet 2019 04 19;15(4):e1008045. Epub 2019 Apr 19.

Department of Human Genetics, University of Chicago, Chicago, Illinois, United States of America.

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April 2019

Mesenteric Lymphatic Alterations Observed During DSS Induced Intestinal Inflammation Are Driven in a TLR4-PAMP/DAMP Discriminative Manner.

Front Immunol 2019 26;10:557. Epub 2019 Mar 26.

Department of Physiology and Pharmacology, Inflammation Research Network, Snyder Institute for Chronic Diseases, University of Calgary, Calgary, AB, Canada.

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September 2020

Estimating recent migration and population-size surfaces.

PLoS Genet 2019 01 14;15(1):e1007908. Epub 2019 Jan 14.

Evolutionary Biology, University of Chicago, Chicago, Illinois, United States of America.

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January 2019

A new sequence logo plot to highlight enrichment and depletion.

BMC Bioinformatics 2018 Dec 10;19(1):473. Epub 2018 Dec 10.

Department of Statistics, University of Chicago, Chicago, 60637, USA.

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December 2018