Matthew Slattery

Matthew Slattery

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Matthew Slattery

Matthew Slattery

Publications by authors named "Matthew Slattery"

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Pesticide Encapsulation at the Nanoscale Drives Changes to the Hydrophobic Partitioning and Toxicity of an Active Ingredient.

Nanomaterials (Basel) 2019 Jan 9;9(1). Epub 2019 Jan 9.

School of Chemical, Biological and Environmental Engineering, Oregon State University, Corvallis, OR 97330, USA.

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http://dx.doi.org/10.3390/nano9010081DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6358805PMC
January 2019

A distinct class of antioxidant response elements is consistently activated in tumors with NRF2 mutations.

Redox Biol 2018 10 22;19:235-249. Epub 2018 Aug 22.

Department of Biomedical Sciences, University of Minnesota Medical School, Duluth, MN 55812, USA. Electronic address:

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http://dx.doi.org/10.1016/j.redox.2018.07.026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6128101PMC
October 2018

Identification of a functional antioxidant response element at the HIF1A locus.

Redox Biol 2018 10 30;19:401-411. Epub 2018 Aug 30.

Department of Biomedical Sciences, University of Minnesota Medical School, 1035 University Drive, SMed 255, Duluth, MN 55812, United States. Electronic address:

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http://dx.doi.org/10.1016/j.redox.2018.08.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6146589PMC
October 2018

cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg.

PLoS Genet 2018 08 24;14(8):e1007568. Epub 2018 Aug 24.

Department of Biochemistry and Molecular Biophysics and Department of Systems Biology, Columbia University, New York, NY, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1007568DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6147608PMC
August 2018

A hypermorphic antioxidant response element is associated with increased MS4A6A expression and Alzheimer's disease.

Redox Biol 2018 04 27;14:686-693. Epub 2017 Oct 27.

Department of Biomedical Sciences, University of Minnesota Medical School, Duluth, MN 55812, USA; Developmental Biology Center, University of Minnesota, Minneapolis, MN 55455, USA. Electronic address:

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http://dx.doi.org/10.1016/j.redox.2017.10.018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5705802PMC
April 2018

A Role for Monomethylation of Histone H3-K27 in Gene Activity in .

Genetics 2018 03 14;208(3):1023-1036. Epub 2017 Dec 14.

Department of Genetics, Cell Biology and Development, University of Minnesota, Minneapolis, Minnesota 55455

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http://dx.doi.org/10.1534/genetics.117.300585DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5844320PMC
March 2018

Gene regulatory effects of disease-associated variation in the NRF2 network.

Curr Opin Toxicol 2016 Dec 28;1:71-79. Epub 2016 Sep 28.

Department of Biomedical Sciences, University of Minnesota Medical School, Duluth, MN, USA; Developmental Biology Center, University of Minnesota, Minneapolis, MN, USA.

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http://dx.doi.org/10.1016/j.cotox.2016.09.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5305174PMC
December 2016

DNA-binding sequence specificity of DUX4.

Skelet Muscle 2016 28;6. Epub 2016 Jan 28.

Lillehei Heart Institute, University of Minnesota, Minneapolis, MN 55455 USA ; Department of Pediatrics, University of Minnesota, Minneapolis, MN 55455 USA.

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http://dx.doi.org/10.1186/s13395-016-0080-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4730607PMC
September 2016

Phylogenetic context determines the role of competition in adaptive radiation.

Proc Biol Sci 2016 Jun;283(1833)

School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA

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http://dx.doi.org/10.1098/rspb.2016.0241DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936025PMC
June 2016

A Polymorphic Antioxidant Response Element Links NRF2/sMAF Binding to Enhanced MAPT Expression and Reduced Risk of Parkinsonian Disorders.

Cell Rep 2016 Apr 14;15(4):830-842. Epub 2016 Apr 14.

Environmental Genomics Section, Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC 27709, USA. Electronic address:

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5063658PMC
http://dx.doi.org/10.1016/j.celrep.2016.03.068DOI Listing
April 2016

Ribbon regulates morphogenesis of the Drosophila embryonic salivary gland through transcriptional activation and repression.

Dev Biol 2016 Jan 19;409(1):234-250. Epub 2015 Oct 19.

Department of Cell Biology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ydbio.2015.10.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4750396PMC
January 2016

Beyond antioxidant genes in the ancient Nrf2 regulatory network.

Free Radic Biol Med 2015 Nov 8;88(Pt B):452-465. Epub 2015 Jul 8.

Department of Biomedical Sciences, University of Minnesota Medical School, Duluth, MN 55812, USA; Developmental Biology Center, University of Minnesota, Minneapolis, MN 55455, USA. Electronic address:

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http://dx.doi.org/10.1016/j.freeradbiomed.2015.06.044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4837897PMC
November 2015

Establishment of a Developmental Compartment Requires Interactions between Three Synergistic Cis-regulatory Modules.

PLoS Genet 2015 Oct 15;11(10):e1005376. Epub 2015 Oct 15.

Departamento de Biología Molecular and Centro de Biología Molecular Severo Ochoa, Universidad Autónoma de Madrid (UAM), Madrid, Spain.

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https://dx.plos.org/10.1371/journal.pgen.1005376
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http://dx.doi.org/10.1371/journal.pgen.1005376DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4607503PMC
October 2015

Deconvolving the recognition of DNA shape from sequence.

Cell 2015 Apr 2;161(2):307-18. Epub 2015 Apr 2.

Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA; Department of Systems Biology, Columbia University, New York, NY 10032, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cell.2015.02.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4422406PMC
April 2015

Absence of a simple code: how transcription factors read the genome.

Trends Biochem Sci 2014 Sep 14;39(9):381-99. Epub 2014 Aug 14.

Molecular and Computational Biology Program, Departments of Biological Sciences, Chemistry, Physics, and Computer Science, University of Southern California, Los Angeles, CA 90089, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tibs.2014.07.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149858PMC
September 2014

Transcription factor networks in Drosophila melanogaster.

Cell Rep 2014 Sep 18;8(6):2031-2043. Epub 2014 Sep 18.

Department of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Biogen Idec, Inc., Cambridge, MA 02142, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2014.08.038DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4403667PMC
September 2014

Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification.

Genome Res 2014 Jul;24(7):1115-24

Department of Ecology and Evolution, University of Chicago, Chicago, Illinois 60637, USA; Institute for Genomics and Systems Biology, University of Chicago and Argonne National Laboratory, Chicago, Illinois 60637, USA; Department of Human Genetics, University of Chicago, Chicago, Illinois 60637, USA;

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http://dx.doi.org/10.1101/gr.162008.113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079967PMC
July 2014

Yorkie promotes transcription by recruiting a histone methyltransferase complex.

Cell Rep 2014 Jul 10;8(2):449-59. Epub 2014 Jul 10.

Howard Hughes Medical Institute, Waksman Institute and Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, NJ 08854, USA. Electronic address:

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http://dx.doi.org/10.1016/j.celrep.2014.06.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4152371PMC
July 2014

Divergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning.

PLoS Genet 2013 5;9(9):e1003753. Epub 2013 Sep 5.

Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, United States of America ; Institute for Genomics and Systems Biology and Department of Human Genetics, University of Chicago, Chicago, Illinois, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1003753DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3764184PMC
March 2014

Enhanced dissection of the regulatory genome.

Nat Methods 2013 Aug;10(8):710-2

Department of Biomedical Sciences, University of Minnesota Medical School, Duluth, Minnesota, USA.

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http://dx.doi.org/10.1038/nmeth.2577DOI Listing
August 2013

Disentangling the many layers of eukaryotic transcriptional regulation.

Annu Rev Genet 2012 28;46:43-68. Epub 2012 Aug 28.

Department of Genetics and Development, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.1146/annurev-genet-110711-155437DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4295906PMC
April 2013

Genome-wide association of Yorkie with chromatin and chromatin-remodeling complexes.

Cell Rep 2013 Feb 8;3(2):309-18. Epub 2013 Feb 8.

Howard Hughes Medical Institute, Waksman Institute, and Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, NJ 08854, USA.

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http://dx.doi.org/10.1016/j.celrep.2013.01.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633442PMC
February 2013

A survey of 6,300 genomic fragments for cis-regulatory activity in the imaginal discs of Drosophila melanogaster.

Cell Rep 2012 Oct 12;2(4):1014-24. Epub 2012 Oct 12.

Department of Biochemistry and Molecular Biophysics, Columbia University Medical Center, 701 W. 168th Street, HHSC 1104, New York, NY 10032, USA.

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http://dx.doi.org/10.1016/j.celrep.2012.09.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483442PMC
October 2012

Control of mitochondrial structure and function by the Yorkie/YAP oncogenic pathway.

Genes Dev 2012 Sep 27;26(18):2027-37. Epub 2012 Aug 27.

Department of Molecular, Cell, and Developmental Biology, Broad Stem Cell Research Center, University of California at Los Angeles, Los Angeles, California 90095, USA.

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http://dx.doi.org/10.1101/gad.183061.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3444729PMC
September 2012

Interpreting the regulatory genome: the genomics of transcription factor function in Drosophila melanogaster.

Brief Funct Genomics 2012 Sep;11(5):336-46

Institute for Genomics & Systems Biology, Chicago, IL 60637, USA.

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http://dx.doi.org/10.1093/bfgp/els034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3459015PMC
September 2012

Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins.

Cell 2011 Dec;147(6):1270-82

Department of Biochemistry and Molecular Biophysics, Columbia University, 701 West 168(th) Street, HHSC 1104, New York, NY 10032, USA.

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http://dx.doi.org/10.1016/j.cell.2011.10.053DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3319069PMC
December 2011

Tetracycline photolysis in natural waters: loss of antibacterial activity.

Chemosphere 2011 Nov 28;85(9):1505-10. Epub 2011 Sep 28.

Department of Chemistry, University of St. Thomas, 2115 Summit Ave., St. Paul, MN 55105, USA.

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http://dx.doi.org/10.1016/j.chemosphere.2011.08.051DOI Listing
November 2011

Genome-wide tissue-specific occupancy of the Hox protein Ultrabithorax and Hox cofactor Homothorax in Drosophila.

PLoS One 2011 Apr 5;6(4):e14686. Epub 2011 Apr 5.

Department of Biochemistry and Molecular Biophysics, Columbia University, New York, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0014686PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3071676PMC
April 2011

Transcription factor choice in the Hippo signaling pathway: homothorax and yorkie regulation of the microRNA bantam in the progenitor domain of the Drosophila eye imaginal disc.

Genes Dev 2009 Oct 17;23(19):2307-19. Epub 2009 Sep 17.

Department of Biochemistry and Molecular Biophysics, Columbia University Medical Center, New York, New York 10032, USA.

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http://genesdev.cshlp.org/cgi/doi/10.1101/gad.1820009
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http://dx.doi.org/10.1101/gad.1820009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2758742PMC
October 2009

A lexicon for homeodomain-DNA recognition.

Cell 2008 Jun;133(7):1133-5

Growth and Development, Biozentrum der Universität Basel, Klingelbergstrasse 70, CH-4056 Basel, Switzerland.

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http://linkinghub.elsevier.com/retrieve/pii/S009286740800760
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http://dx.doi.org/10.1016/j.cell.2008.06.008DOI Listing
June 2008

Protein kinase A, TOR, and glucose transport control the response to nutrient repletion in Saccharomyces cerevisiae.

Eukaryot Cell 2008 Feb 21;7(2):358-67. Epub 2007 Dec 21.

School of Pharmacy, University of Wisconsin, Madison, WI 53705, USA.

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http://dx.doi.org/10.1128/EC.00334-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238170PMC
February 2008

Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae.

J Biol Chem 2007 Sep 6;282(36):26623-8. Epub 2007 Jul 6.

Department of Biomolecular Chemistry, School of Medicine, University of Wisconsin, Madison, Wisconsin 53705, USA.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M704762200
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http://dx.doi.org/10.1074/jbc.M704762200DOI Listing
September 2007

Coordinated regulation of growth genes in Saccharomyces cerevisiae.

Cell Cycle 2007 May 9;6(10):1210-9. Epub 2007 May 9.

Pharmaceutical Sciences, School of Pharmacy, University of Wisconsin, Madison, Wisconsin 53705, USA.

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http://dx.doi.org/10.4161/cc.6.10.4257DOI Listing
May 2007

Chemical inhibition of the TFIIH-associated kinase Cdk7/Kin28 does not impair global mRNA synthesis.

Proc Natl Acad Sci U S A 2007 Apr 28;104(14):5812-7. Epub 2007 Mar 28.

Department of Biochemistry and Genome Center of Wisconsin, University of Wisconsin, Madison, WI 53706, USA.

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http://dx.doi.org/10.1073/pnas.0611505104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1851574PMC
April 2007

Using the yeast gene deletion collection to customize gene expression.

Biotechniques 2006 Jun;40(6):728, 730, 732 passim

University of Wisconsin, Madison, WI 53706, USA.

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http://dx.doi.org/10.2144/000112192DOI Listing
June 2006

The function and properties of the Azf1 transcriptional regulator change with growth conditions in Saccharomyces cerevisiae.

Eukaryot Cell 2006 Feb;5(2):313-20

Pharmaceutical Sciences, School of Pharmacy, University of Wisconsin, 425 N. Charter Street, Madison, WI 53706, USA.

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http://ec.asm.org/lookup/doi/10.1128/EC.5.2.313-320.2006
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http://dx.doi.org/10.1128/EC.5.2.313-320.2006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1405897PMC
February 2006

Glucose regulation of Saccharomyces cerevisiae cell cycle genes.

Eukaryot Cell 2003 Feb;2(1):143-9

Department of Biomolecular Chemistry, University of Wisconsin, Madison, Wisconsin 53705, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC141163PMC
http://dx.doi.org/10.1128/ec.2.1.143-149.2003DOI Listing
February 2003