Matthew P Campbell

Matthew P Campbell

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Matthew P Campbell

Matthew P Campbell

Publications by authors named "Matthew P Campbell"

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42Publications

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Expanding the capillary electrophoresis based glucose unit database of the GUcal app.

Glycobiology 2019 Dec 12. Epub 2019 Dec 12.

Translational Glycomics Group, Research Institute of Biomolecular and Chemical Engineering, University of Pannonia, Veszprem, Hungary.

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http://dx.doi.org/10.1093/glycob/cwz102DOI Listing
December 2019

Recent advances in glycoinformatic platforms for glycomics and glycoproteomics.

Curr Opin Struct Biol 2019 Dec 20;62:56-69. Epub 2019 Dec 20.

Institute for Glycomics, Griffith University, Gold Coast, QLD, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.sbi.2019.11.009DOI Listing
December 2019

Navigating the Glycome Space and Connecting the Glycoproteome.

Methods Mol Biol 2017 ;1558:139-158

Department of Chemistry and Biomolecular Sciences, Research Drive, Building E8C, Macquarie University, North Ryde, Sydney, 2109, NSW, Australia.

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http://dx.doi.org/10.1007/978-1-4939-6783-4_7DOI Listing
February 2018

Building a PGC-LC-MS N-glycan retention library and elution mapping resource.

Glycoconj J 2018 02 13;35(1):15-29. Epub 2017 Sep 13.

Department of Chemistry and Biomolecular Sciences, Faculty of Science & Engineering, Macquarie University, North Ryde, Sydney, NSW, 2109, Australia.

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http://dx.doi.org/10.1007/s10719-017-9793-4DOI Listing
February 2018

Databases and Associated Tools for Glycomics and Glycoproteomics.

Methods Mol Biol 2017 ;1503:235-264

Department of Medical Biochemistry and Cell Biology, Institute of Biomedicine, Sahlgrenska Academy, University of Gothenburg, Box 440, 405 30, Gothenburg, Sweden.

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http://dx.doi.org/10.1007/978-1-4939-6493-2_18DOI Listing
January 2018

UniCarbKB: New database features for integrating glycan structure abundance, compositional glycoproteomics data, and disease associations.

Biochim Biophys Acta 2016 Aug 3;1860(8):1669-75. Epub 2016 Mar 3.

Department of Chemistry and Biomolecular Sciences, Biomolecular Frontiers Research Centre, Macquarie University, Sydney 2109, Australia.

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http://dx.doi.org/10.1016/j.bbagen.2016.02.016DOI Listing
August 2016

Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database.

Carbohydr Res 2016 Aug 30;431:56-63. Epub 2016 May 30.

Department of Chemistry and Biomolecular Sciences, Faculty of Science & Engineering, Macquarie University, Balaclava Road, North Ryde, NSW, 2109, Australia. Electronic address:

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http://dx.doi.org/10.1016/j.carres.2016.05.012DOI Listing
August 2016

GlycoMob: an ion mobility-mass spectrometry collision cross section database for glycomics.

Glycoconj J 2016 06 28;33(3):399-404. Epub 2015 Aug 28.

Biomolecular Frontiers Research Centre, Macquarie University, Sydney, NSW 2109, Australia.

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http://dx.doi.org/10.1007/s10719-015-9613-7DOI Listing
June 2016

Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search.

PLoS One 2015 14;10(12):e0144578. Epub 2015 Dec 14.

Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, 1211, Switzerland.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0144578PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4684231PMC
June 2016

SugarBindDB, a resource of glycan-mediated host-pathogen interactions.

Nucleic Acids Res 2016 Jan 17;44(D1):D1243-50. Epub 2015 Nov 17.

Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland Department of Computer Science, University of Geneva, Geneva, Switzerland

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http://dx.doi.org/10.1093/nar/gkv1247DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702881PMC
January 2016

GlycoBase and autoGU: resources for interpreting HPLC-glycan data.

Methods Mol Biol 2015 ;1273:17-28

Biomolecular Frontiers Research Centre, Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, 2109, Australia,

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http://dx.doi.org/10.1007/978-1-4939-2343-4_2DOI Listing
November 2015

GlycoRDF: an ontology to standardize glycomics data in RDF.

Bioinformatics 2015 Mar 11;31(6):919-25. Epub 2014 Nov 11.

Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, Faculty of Engineering, Soka University, Tokyo, Japan, Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan.

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http://dx.doi.org/10.1093/bioinformatics/btu732DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4380026PMC
March 2015

GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination.

Bioinformatics 2014 Nov 10;30(21):3131-3. Epub 2014 Jul 10.

Proteome Informatics Group, Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland, Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW 2109, Australia, National Institute for Bioprocessing Research and Training, GlycoScience Group, Dublin, Ireland, Department of Medical Biochemistry and Cell Biology, University of Gothenburg, 40530 Gothenburg, Sweden and Section of Biology, University of Geneva, 1211 Geneva, Switzerland Proteome Informatics Group, Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland, Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW 2109, Australia, National Institute for Bioprocessing Research and Training, GlycoScience Group, Dublin, Ireland, Department of Medical Biochemistry and Cell Biology, University of Gothenburg, 40530 Gothenburg, Sweden and Section of Biology, University of Geneva, 1211 Geneva, Switzerland.

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http://dx.doi.org/10.1093/bioinformatics/btu425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4609004PMC
November 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repository.

Biochim Biophys Acta 2014 Jan 25;1844(1 Pt A):108-16. Epub 2013 Apr 25.

Biomolecular Frontiers Research Centre, Macquarie University, Sydney, New South Wales, Australia.

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http://dx.doi.org/10.1016/j.bbapap.2013.04.018DOI Listing
January 2014

UniCarbKB: building a knowledge platform for glycoproteomics.

Nucleic Acids Res 2014 Jan 13;42(Database issue):D215-21. Epub 2013 Nov 13.

Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW 2109, Australia, Proteome Informatics Group, Swiss Institute of Bioinformatics, Geneva, Switzerland, Swiss-Prot Group, Swiss Institute of Bioinformatics, Geneva, Switzerland, Department of Bioinformatics, Faculty of Engineering, Soka University, 1-236 Tangi-machi, Hachioji, Tokyo, Japan and Section of Biology, Faculty of Sciences, University of Geneva, Switzerland.

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http://dx.doi.org/10.1093/nar/gkt1128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3964942PMC
January 2014

Introducing glycomics data into the Semantic Web.

J Biomed Semantics 2013 Nov 26;4(1):39. Epub 2013 Nov 26.

Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba Central-2, Umezono 1-1-1, Tsukuba 305-8568, Japan.

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http://dx.doi.org/10.1186/2041-1480-4-39DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177142PMC
November 2013

Glycosylation status of serum in inflammatory arthritis in response to anti-TNF treatment.

Rheumatology (Oxford) 2013 Sep 16;52(9):1572-82. Epub 2013 May 16.

Department of Rheumatology, Dublin Academic Medical Centre, Dublin 4, Ireland.

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http://dx.doi.org/10.1093/rheumatology/ket189DOI Listing
September 2013

Structural feature ions for distinguishing N- and O-linked glycan isomers by LC-ESI-IT MS/MS.

J Am Soc Mass Spectrom 2013 Jun 20;24(6):895-906. Epub 2013 Apr 20.

Biomolecular Frontiers Research Centre, Macquarie University, North Ryde, NSW, Australia.

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http://dx.doi.org/10.1007/s13361-013-0610-4DOI Listing
June 2013

Tandem mass spectra of glycan substructures enable the multistage mass spectrometric identification of determinants on oligosaccharides.

Rapid Commun Mass Spectrom 2013 May;27(9):931-9

Biomolecular Frontiers Research Centre, Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, Australia.

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http://dx.doi.org/10.1002/rcm.6527DOI Listing
May 2013

Greedy feature selection for glycan chromatography data with the generalized Dirichlet distribution.

BMC Bioinformatics 2013 May 7;14:155. Epub 2013 May 7.

School of Mathematical Sciences, University College Dublin, Belfield, Dublin 4, Ireland.

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http://dx.doi.org/10.1186/1471-2105-14-155DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3703279PMC
May 2013

UniCarbKB: putting the pieces together for glycomics research.

Proteomics 2011 Nov 19;11(21):4117-21. Epub 2011 Sep 19.

Biomolecular Frontiers Research Centre, Macquarie University, Sydney, NSW, Australia.

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http://dx.doi.org/10.1002/pmic.201100302DOI Listing
November 2011

Symbol nomenclature for representing glycan structures: Extension to cover different carbohydrate types.

Proteomics 2011 Nov 27;11(22):4291-5. Epub 2011 Sep 27.

Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX, UK.

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http://dx.doi.org/10.1002/pmic.201100300DOI Listing
November 2011

N-glycans modulate the function of human corticosteroid-binding globulin.

Mol Cell Proteomics 2011 Aug 10;10(8):M111.009100. Epub 2011 May 10.

Department of Biological Sciences and Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW 2109, Australia.

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http://dx.doi.org/10.1074/mcp.M111.009100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3149095PMC
August 2011

UniCarb-DB: a database resource for glycomic discovery.

Bioinformatics 2011 May 12;27(9):1343-4. Epub 2011 Mar 12.

Department of Medical Biochemistry and Cell Biology, University of Gothenburg, Sweden.

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http://dx.doi.org/10.1093/bioinformatics/btr137DOI Listing
May 2011

Connectivity and binding-site recognition: applications relevant to drug design.

J Comput Chem 2010 Nov;31(15):2677-88

Department of Biological Sciences, University of Essex, Wivenhoe Park, Colchester CO4 3SQ, United Kingdom.

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http://dx.doi.org/10.1002/jcc.21561DOI Listing
November 2010

GlycoExtractor: a web-based interface for high throughput processing of HPLC-glycan data.

J Proteome Res 2010 Apr;9(4):2037-41

Dublin-Oxford Glycobiology Laboratory, National Institute for Bioprocessing Research and Training (NIBRT), Conway Institute, University College Dublin, Dublin 4, Ireland.

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http://dx.doi.org/10.1021/pr901213uDOI Listing
April 2010

Proposal for a standard system for drawing structural diagrams of N- and O-linked carbohydrates and related compounds.

Proteomics 2009 Aug;9(15):3796-801

Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, UK.

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http://dx.doi.org/10.1002/pmic.200900096DOI Listing
August 2009

GlycoBase and autoGU: tools for HPLC-based glycan analysis.

Bioinformatics 2008 May 14;24(9):1214-6. Epub 2008 Mar 14.

Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK.

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http://bioinformatics.oxfordjournals.org/content/24/9/1214.f
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http://dx.doi.org/10.1093/bioinformatics/btn090DOI Listing
May 2008

Entropy and oligomerization in GPCRs.

J Mol Neurosci 2005 ;26(2-3):113-22

Department of Biological Sciences, University of Essex, Wivenhoe Park, Colchester, CO4 3SQ, UK.

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http://dx.doi.org/10.1385/JMN:26:2-3:113DOI Listing
October 2005