Matthew N Bainbridge

Matthew N Bainbridge

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Matthew N Bainbridge

Matthew N Bainbridge

Publications by authors named "Matthew N Bainbridge"

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Elucidating the molecular pathogenesis of glioma: integrated germline and somatic profiling of a familial glioma case series.

Neuro Oncol 2018 11;20(12):1625-1633

Department of Medicine, Section of Epidemiology and Population Sciences, Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, Texas.

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http://dx.doi.org/10.1093/neuonc/noy119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6231201PMC
November 2018

Comprehensive Profiling of DNA Repair Defects in Breast Cancer Identifies a Novel Class of Endocrine Therapy Resistance Drivers.

Clin Cancer Res 2018 10 23;24(19):4887-4899. Epub 2018 May 23.

Department of Medicine, Baylor College of Medicine, Houston, Texas.

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http://dx.doi.org/10.1158/1078-0432.CCR-17-3702DOI Listing
October 2018

Analyses of SLC13A5-epilepsy patients reveal perturbations of TCA cycle.

Mol Genet Metab 2017 08 24;121(4):314-319. Epub 2017 Jun 24.

Dept. of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ymgme.2017.06.009DOI Listing
August 2017

SV-STAT accurately detects structural variation via alignment to reference-based assemblies.

Source Code Biol Med 2016 18;11. Epub 2016 Jun 18.

Structural and Computational Biology and Molecular Biophysics (SCBMB) Program, Baylor College of Medicine, Houston, TX 77030 USA ; Texas Children's Cancer Center, Baylor College of Medicine, Houston, TX 77030 USA ; W. M. Keck Center for Interdisciplinary Bioscience Training, Houston, TX 77005 USA.

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http://dx.doi.org/10.1186/s13029-016-0051-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4913042PMC
June 2016

Brain Tumor Epidemiology - A Hub within Multidisciplinary Neuro-oncology. Report on the 15th Brain Tumor Epidemiology Consortium (BTEC) Annual Meeting, Vienna, 2014.

Clin Neuropathol 2015 Jan-Feb;34(1):40-6

Institute of Neurology, Medical University of Vienna, Austria, Department of Pediatrics, Section of Hematology-Oncology, Baylor College of Medicine, Houston, TX, USA, Department of Biomedical Imaging and Image-guided Therapy, Medical University of Vienna, Austria, Department of Neurosurgery, CHU Montpellier, France, Service of Neurology, Hospital Clínic, University of Barcelona, Spain, German Cancer Research Center DKFZ, Heidelberg, Germany, Division of Child Neurology, Department of Neurology, Stanford University, CA, USA, SwissCore, Brussels, Belgium, Erasmus MC, Rotterdam, The Netherlands, Central Brain Tumor Registry of the US, Hinsdale, IL, USA, Department of Epidemiology and Biostatistics, Department of Neurological Surgery, University of California, San Francisco, Department of Epidemiology, University of California, Los Angeles, CA, Brown School Master of Public Health Program, Washington University in St. Louis, MO, Division of Hematology-Oncology, The Vontz Center for Molecular Studies, University of Cincinnati, OH, Department of Neurology, The Mayo Clinic, Rochester, MN, USA Division of Pediatric Hematology/Oncology, Dalhouse University, Canada, Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA, Preventive Medicine, University of Southern California, Los Angeles, CA, Brain Tumor Center, University of Cincinnati, and Case Comprehensive Cancer Center, Case Western Reserve University School of Medicine, Cleveland, OH, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4317580PMC
August 2015

Loss of Function Mutations in NNT Are Associated With Left Ventricular Noncompaction.

Circ Cardiovasc Genet 2015 Aug 29;8(4):544-52. Epub 2015 May 29.

From the Human Genome Sequencing Center (M.N.B., M.W., H.D., D.M., E.B., R.G.), Department Pediatrics-Cardiology, Baylor College of Medicine, Houston, TX (H.R.M., R.P., J.L.J.); Codified Genomics, LLC, Houston, TX (M.N.B.); Center for Human Disease Modeling, Duke University Medical Center, Durham, NC (E.E.D., N.K.); and Department of Cell Biology, Duke University, Durham, NC (W.-Y.C., A.D.).

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http://dx.doi.org/10.1161/CIRCGENETICS.115.001026DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4545476PMC
August 2015

Secondary findings and carrier test frequencies in a large multiethnic sample.

Genome Med 2015 13;7(1):54. Epub 2015 Jun 13.

The Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030 USA ; Human Genetics Center, University of Texas Health Science Center at Houston, Houston, TX 77030 USA.

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http://dx.doi.org/10.1186/s13073-015-0171-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4507324PMC
July 2015

Germline mutations in shelterin complex genes are associated with familial glioma.

J Natl Cancer Inst 2015 Jan 7;107(1):384. Epub 2014 Dec 7.

Affiliations of authors: Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX (MNB, SNJ, HD, LL, JT, DMM, RAG); Codified Genomics, LLC, Houston, TX (MNB); Department of Pediatrics, Division of Hematology-Oncology, Dan L. Duncan Cancer Center (GNA, MMG, AAB, ST, YL, SEP, CCL, DWP, MLB) and Department of Neurosurgery (AJ), Baylor College of Medicine, Houston, TX; Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, CT (EBC); Department of Neurosurgery, Brigham and Women's Hospital, Boston, MA (EBC); Case Comprehensive Cancer Center, Case Western Reserve University School of Medicine, Cleveland, OH (JBS); Department of Epidemiology and Biostatistics, Georgia State University School of Public Health, Atlanta, GA (DI); Cancer Control and Prevention Program, Department of Community and Family Medicine, Duke University Medical Center, Durham, NC (DI, JS); Department of Surgery, Duke University Medical Center, Durham, North Carolina (FAO); Cancer and Radiation Epidemiology Unit, Gertner Institute, Chaim Sheba Medical Center, Tel Hashomer (SS); Sackler School of Medicine, Tel-Aviv University, Tel-Aviv, Israel (SiS); Institute of Cancer Epidemiology, Danish Cancer Society, Copenhagen, Denmark (CJ); Section of Cancer Genetics, Institute of Cancer Research, Sutton, Surrey, UK (RSH); Mayo Clinic Comprehensive Cancer Center, Mayo Clinic, Rochester, MN (RBJ, DL); Department of Epidemiology and Biostatistics, Memorial Sloan-Kettering Cancer Center, New York, NY (SHO, JLB); Department of Neurology, NorthShore University HealthSystem, Evanston, IL (RTM); Department of Neurological Surgery, University of California, San Francisco, San Francisco, CA (MRW, KMW); Department of Public Health Services, University of Alberta, Edmonton, Alberta, Canada (FGD); Departments of Neurology, Neurosurgery, and Preventive Medicine, University of Southern California Keck School of Medicine, Los Angeles, CA (RL); Department of Biostatistics (Sa

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http://dx.doi.org/10.1093/jnci/dju384DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4296199PMC
January 2015

Germline rearrangements in families with strong family history of glioma and malignant melanoma, colon, and breast cancer.

Neuro Oncol 2014 Oct 9;16(10):1333-40. Epub 2014 Apr 9.

Department of Radiation Sciences, Oncology, Umeå University, Umeå, Sweden (U.A., C.W., B.S.M.); Computational Life Science Cluster (CLiC), Umeå University, Umeå, Sweden (C.W.); Department of Medical Biosciences, Pathology, Umeå University, Umeå Sweden (K.C.); Department of Oncology, Clinical Science, Lund University, Lund, Sweden (S.A., Å.B.); Department of Pediatrics, Section of Hematology/Oncology, Baylor College of Medicine, Houston, Texas (G.N.A., M.L.B.); Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas (S.S.); Texas Children's Cancer and Hematology Centers, Baylor College of Medicine, Houston, Texas (C.C.L.); Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas (M.N.B.); School of Public Health, Yale University, New Haven, Connecticut (E.B.C.); Department of Neurosurgery, Brigham and Women's Hospital, Boston, Massachusetts (E.B.C.); Case Comprehensive Cancer Center, Case Western Reserve University School of Medicine, Cleveland, Ohio (J.B.-S.); University of Southern California, Los Angeles, California (R.L.); Cancer Control and Prevention Program/Department of Community and Family Medicine, Duke University Medical Center, Durham, North Carolina (D.I., J.S.); Section of Cancer Genetics, Institute of Cancer Research, Sutton, Surrey, UK (R.S.H.); Department of Epidemiology and Biostatistics, Memorial Sloan-Kettering Cancer Center , New York, New York (J.L.B., S.H.O.); Mayo Comprehensive Clinic Cancer, Mayo Clinic, Rochester, Minnesota (R.B.J., D.H.L.); Department of Neurological Surgery, University of California, San Francisco, California (M.W.); School of Public Health, University of Alberta, Edmonton, Canada (F.G.D.); Department of Neurology, NorthShore University Health System, Evanston, Illinois (R.M.); Cancer Late Effects Research, Oncology, Finsencenteret, Rigshospitalet, University of Copenhagen and Head, Survivorship, Danish Cancer Society Research Center, Copenhagen, Denmark (C.J.)

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https://academic.oup.com/neuro-oncology/article-lookup/doi/1
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http://dx.doi.org/10.1093/neuonc/nou052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165415PMC
October 2014

Somatic mutation load of estrogen receptor-positive breast tumors predicts overall survival: an analysis of genome sequence data.

Breast Cancer Res Treat 2014 Jul 18;146(1):211-20. Epub 2014 May 18.

Department of Clinical Cancer Prevention, Unit 1360, The University of Texas M.D. Anderson Cancer Center, P.O. Box 301439, Houston, TX, 77030-1439, USA,

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http://dx.doi.org/10.1007/s10549-014-2991-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4061465PMC
July 2014

Exome sequencing resolves apparent incidental findings and reveals further complexity of SH3TC2 variant alleles causing Charcot-Marie-Tooth neuropathy.

Genome Med 2013 27;5(6):57. Epub 2013 Jun 27.

Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA ; Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.

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http://dx.doi.org/10.1186/gm461DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3706849PMC
May 2014

Identification of genetic risk variants for deep vein thrombosis by multiplexed next-generation sequencing of 186 hemostatic/pro-inflammatory genes.

BMC Med Genomics 2012 Feb 21;5. Epub 2012 Feb 21.

Angelo Bianchi Bonomi Hemophilia and Thrombosis Center, U.O.S. Dipartimentale per la Diagnosi e la Terapia delle Coagulopatie, Fondazione IRCCS Cà Granda - Ospedale Maggiore Policlinico, Università degli Studi di Milano, Milan, Italy.

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http://dx.doi.org/10.1186/1755-8794-5-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3305575PMC
February 2012

THOR: targeted high-throughput ortholog reconstructor.

Bioinformatics 2007 Oct 11;23(19):2622-4. Epub 2006 Oct 11.

British Columbia Cancer Agency (BCCA) Genome Sciences Centre, 675 West 10th Avenue, Vancouver, BC, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btl513DOI Listing
October 2007